Wall clock time and date at job start Tue Mar 31 2020 06:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 C 1.53003 * 109.47177 * 301.85527 * 3 2 1 5 5 C 1.52993 * 109.47153 * 295.12993 * 4 3 2 6 6 C 1.53001 * 109.47007 * 61.85486 * 3 2 1 7 7 N 1.46498 * 109.46996 * 64.99730 * 6 3 2 8 8 C 1.34779 * 120.00041 * 179.97438 * 7 6 3 9 9 O 1.21283 * 120.00077 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.00101 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.46992 * 180.02562 * 10 8 7 12 12 C 1.37646 * 120.12571 * 265.30151 * 11 10 8 13 13 C 1.38610 * 120.24911 * 180.32050 * 12 11 10 14 14 C 1.38659 * 120.50009 * 359.67176 * 13 12 11 15 15 C 1.37598 * 120.24965 * 0.02562 * 14 13 12 16 16 C 1.40688 * 120.13314 * 84.99621 * 11 10 8 17 17 C 1.41396 * 120.24324 * 359.97438 * 16 11 10 18 18 H 1.08000 * 119.99889 * 26.13864 * 17 16 11 19 19 C 1.39949 * 120.00434 * 206.13859 * 17 16 11 20 20 N 1.30827 * 119.99469 * 16.31040 * 19 17 16 21 21 Si 1.86794 * 120.00401 * 196.30961 * 19 17 16 22 22 H 1.48506 * 109.46885 * 265.02542 * 21 19 17 23 23 H 1.48500 * 109.47240 * 25.02055 * 21 19 17 24 24 H 1.48498 * 109.47286 * 145.02542 * 21 19 17 25 25 H 1.08996 * 109.47029 * 181.80895 * 1 2 3 26 26 H 1.09001 * 109.47150 * 301.81212 * 1 2 3 27 27 H 1.09008 * 109.47119 * 61.81589 * 1 2 3 28 28 H 1.09000 * 109.47021 * 240.00439 * 2 1 3 29 29 H 1.08992 * 109.46787 * 120.00503 * 2 1 3 30 30 H 1.09000 * 109.46932 * 181.85390 * 3 2 1 31 31 H 1.09003 * 109.46856 * 55.13558 * 4 3 2 32 32 H 1.09006 * 109.46946 * 175.13009 * 4 3 2 33 33 H 1.09000 * 109.47647 * 305.67909 * 5 4 3 34 34 H 1.09008 * 109.46917 * 65.68039 * 5 4 3 35 35 H 1.09004 * 109.47163 * 185.67337 * 5 4 3 36 36 H 1.09011 * 109.47058 * 305.00065 * 6 3 2 37 37 H 1.08999 * 109.47563 * 185.00200 * 6 3 2 38 38 H 0.96996 * 120.00176 * 0.02562 * 7 6 3 39 39 H 1.08995 * 109.46754 * 59.99985 * 10 8 7 40 40 H 1.08994 * 109.46700 * 299.99885 * 10 8 7 41 41 H 1.08000 * 119.87644 * 0.02562 * 12 11 10 42 42 H 1.08001 * 119.75501 * 179.69618 * 13 12 11 43 43 H 1.08002 * 119.87619 * 180.02562 * 14 13 12 44 44 H 1.07994 * 120.12812 * 180.02562 * 15 14 13 45 45 H 0.96995 * 119.99541 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4923 2.1771 -1.2253 5 6 2.0613 1.5436 -2.4963 6 6 1.5685 2.1501 1.2719 7 7 2.1886 1.5197 2.4399 8 6 1.9181 1.9802 3.6774 9 8 1.1609 2.9162 3.8240 10 6 2.5565 1.3320 4.8789 11 6 2.0920 2.0289 6.1317 12 6 2.8474 3.0404 6.6801 13 6 2.4259 3.6787 7.8361 14 6 1.2376 3.3118 8.4492 15 6 0.4632 2.3076 7.9151 16 6 0.8813 1.6526 6.7417 17 6 0.0935 0.6197 6.1834 18 1 0.5576 -0.1497 5.5843 19 6 -1.2878 0.5943 6.4072 20 7 -1.8989 1.6642 6.8468 21 14 -2.2587 -0.9672 6.0783 22 1 -2.8384 -0.9111 4.7122 23 1 -1.3574 -2.1425 6.1856 24 1 -3.3523 -1.0894 7.0755 25 1 -0.3633 -1.0271 0.0324 26 1 -0.3633 0.5417 0.8733 27 1 -0.3634 0.4854 -0.9059 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.1295 1.4426 -0.0332 31 1 0.4049 2.1026 -1.2375 32 1 1.7840 3.2264 -1.1802 33 1 3.1497 1.5272 -2.4383 34 1 1.6872 0.5244 -2.5931 35 1 1.7524 2.1279 -3.3632 36 1 0.4840 2.0725 1.3501 37 1 1.8555 3.2008 1.2309 38 1 2.7945 0.7713 2.3227 39 1 3.6408 1.4096 4.8002 40 1 2.2694 0.2814 4.9203 41 1 3.7745 3.3347 6.2106 42 1 3.0273 4.4680 8.2623 43 1 0.9185 3.8162 9.3493 44 1 -0.4622 2.0237 8.3940 45 1 -2.8563 1.6467 7.0016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776896628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:51 Heat of formation + Delta-G solvation = -47.609977 kcal Electronic energy + Delta-G solvation = -23242.591110 eV Core-core repulsion = 20030.515199 eV Total energy + Delta-G solvation = -3212.075911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.29448 -37.86174 -36.95848 -33.53789 -33.48294 -31.64230 -31.20786 -29.40164 -28.52367 -26.54449 -24.97954 -24.22652 -23.12047 -20.87818 -20.32676 -19.46232 -18.92101 -17.13688 -16.29114 -16.01530 -15.56656 -15.24071 -15.04879 -14.38811 -14.37737 -13.76228 -13.52358 -13.19145 -13.09088 -13.01590 -12.58685 -12.53152 -12.13457 -12.01048 -11.75324 -11.56385 -11.45477 -11.26864 -11.09345 -11.04456 -10.82306 -10.64146 -10.60572 -10.52380 -10.42494 -10.35546 -9.42170 -9.28546 -9.08183 -8.97510 -8.49463 -7.25060 -7.23498 -6.64355 -4.25063 2.84934 3.03412 3.10075 3.13518 3.31605 3.55305 3.82782 3.98794 4.67779 4.71539 4.74670 4.77960 5.12747 5.21434 5.30012 5.43617 5.57898 5.60755 5.63037 5.72420 5.78303 5.84783 5.86623 5.99039 6.01249 6.07696 6.09604 6.19464 6.23945 6.25417 6.35080 6.43607 6.47829 6.58769 6.83798 6.98244 7.18064 7.34985 7.48665 7.71015 7.97478 8.07030 8.15387 8.19454 8.39288 8.71500 8.98156 9.07884 9.08300 10.30859 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.004967 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.731554 B = 5635.375879 C = 7089.525265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.121 4.121 5 C -0.150 4.150 6 C 0.123 3.877 7 N -0.746 5.746 8 C 0.514 3.486 9 O -0.513 6.513 10 C -0.069 4.069 11 C -0.180 4.180 12 C -0.081 4.081 13 C -0.242 4.242 14 C -0.106 4.106 15 C -0.163 4.163 16 C 0.131 3.869 17 C -0.460 4.460 18 H 0.074 0.926 19 C 0.079 3.921 20 N -0.790 5.790 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.261 1.261 24 H -0.276 1.276 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.392 0.608 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.159 -4.285 -13.594 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.156 4.156 3 C -0.117 4.117 4 C -0.159 4.159 5 C -0.208 4.208 6 C -0.001 4.001 7 N -0.401 5.401 8 C 0.301 3.699 9 O -0.386 6.386 10 C -0.109 4.109 11 C -0.182 4.182 12 C -0.099 4.099 13 C -0.261 4.261 14 C -0.124 4.124 15 C -0.182 4.182 16 C 0.128 3.872 17 C -0.490 4.490 18 H 0.092 0.908 19 C -0.139 4.139 20 N -0.415 5.415 21 Si 0.725 3.275 22 H -0.198 1.198 23 H -0.185 1.185 24 H -0.201 1.201 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.226 0.774 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.133 0.867 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.334 -3.481 -13.411 14.847 hybrid contribution -0.340 -0.905 -0.284 1.008 sum 4.994 -4.386 -13.695 15.223 Atomic orbital electron populations 1.21907 0.95768 1.01665 1.02308 1.21545 0.96532 0.95802 1.01746 1.21438 1.00422 0.95572 0.94313 1.21555 1.01246 0.99410 0.93672 1.21784 1.00863 1.00896 0.97236 1.21323 0.98471 0.96411 0.83896 1.46120 1.50487 1.37391 1.06071 1.21069 0.81491 0.83744 0.83588 1.90705 1.34442 1.27880 1.85571 1.20248 0.98614 1.00596 0.91424 1.18997 1.00129 1.01994 0.97078 1.20291 0.97752 0.96027 0.95877 1.20290 0.99712 1.05387 1.00732 1.20669 0.95129 0.98068 0.98564 1.21266 1.00466 0.99409 0.97041 1.17320 0.89676 0.90571 0.89597 1.19436 0.91707 1.09096 1.28714 0.90773 1.25830 0.98449 0.96558 0.93050 1.69846 1.10808 1.27307 1.33580 0.86435 0.79560 0.82710 0.78816 1.19761 1.18489 1.20077 0.93009 0.91830 0.92592 0.91949 0.91832 0.90815 0.91209 0.91863 0.92843 0.92556 0.92940 0.91473 0.92326 0.77440 0.90920 0.89154 0.89820 0.89735 0.89653 0.86658 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.21 37.16 0.34 -1.41 16 2 C -0.12 -1.16 5.31 -26.73 -0.14 -1.31 16 3 C -0.10 -1.00 2.20 -90.62 -0.20 -1.20 16 4 C -0.12 -1.10 5.14 -26.73 -0.14 -1.24 16 5 C -0.15 -1.15 9.52 37.15 0.35 -0.80 16 6 C 0.12 1.73 4.88 -4.04 -0.02 1.71 16 7 N -0.75 -11.39 5.27 -60.29 -0.32 -11.71 16 8 C 0.51 10.57 7.82 -10.98 -0.09 10.48 16 9 O -0.51 -13.29 16.03 5.55 0.09 -13.20 16 10 C -0.07 -1.37 5.35 -29.03 -0.16 -1.53 16 11 C -0.18 -4.42 4.43 -103.91 -0.46 -4.88 16 12 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 13 C -0.24 -5.76 10.05 -39.29 -0.39 -6.16 16 14 C -0.11 -2.64 10.02 -39.66 -0.40 -3.03 16 15 C -0.16 -4.42 8.68 -38.87 -0.34 -4.75 16 16 C 0.13 3.55 5.56 -106.83 -0.59 2.96 16 17 C -0.46 -12.24 8.46 -37.74 -0.32 -12.56 16 18 H 0.07 1.86 6.37 -52.49 -0.33 1.52 16 19 C 0.08 2.04 5.16 -17.34 -0.09 1.95 16 20 N -0.79 -21.44 11.00 55.55 0.61 -20.83 16 21 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.85 6.28 -51.93 -0.33 0.52 16 27 H 0.06 0.55 6.39 -51.92 -0.33 0.22 16 28 H 0.06 0.53 6.78 -51.93 -0.35 0.18 16 29 H 0.06 0.64 7.14 -51.93 -0.37 0.27 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.66 6.17 -51.93 -0.32 0.34 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.42 6.89 -51.92 -0.36 0.06 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 1.07 6.19 -51.92 -0.32 0.75 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.39 4.71 7.65 -40.82 -0.31 4.39 16 39 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 40 H 0.09 1.72 6.49 -51.93 -0.34 1.38 16 41 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.12 3.21 6.25 -52.49 -0.33 2.88 16 45 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -31.76 356.64 -9.34 -41.10 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.05 Total: 9.24 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -3.02 Total: -24.07 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.29 Total: -32.54 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.76 -9.34 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776896628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.509 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds