Wall clock time and date at job start Tue Mar 31 2020 06:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47275 * 2 1 4 4 C 1.53003 * 109.47177 * 301.85527 * 3 2 1 5 5 C 1.52993 * 109.47153 * 295.12993 * 4 3 2 6 6 C 1.53001 * 109.47007 * 61.85486 * 3 2 1 7 7 N 1.46498 * 109.46996 * 64.99730 * 6 3 2 8 8 C 1.34779 * 120.00041 * 179.97438 * 7 6 3 9 9 O 1.21283 * 120.00077 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.00101 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.46992 * 180.02562 * 10 8 7 12 12 C 1.37646 * 120.12571 * 265.30151 * 11 10 8 13 13 C 1.38610 * 120.24911 * 180.32050 * 12 11 10 14 14 C 1.38659 * 120.50009 * 359.67176 * 13 12 11 15 15 C 1.37598 * 120.24965 * 0.02562 * 14 13 12 16 16 C 1.40688 * 120.13314 * 84.99621 * 11 10 8 17 17 C 1.41396 * 120.24324 * 359.97438 * 16 11 10 18 18 H 1.08000 * 119.99889 * 26.13864 * 17 16 11 19 19 C 1.39949 * 120.00434 * 206.13859 * 17 16 11 20 20 N 1.30827 * 119.99469 * 16.31040 * 19 17 16 21 21 Si 1.86794 * 120.00401 * 196.30961 * 19 17 16 22 22 H 1.48506 * 109.46885 * 265.02542 * 21 19 17 23 23 H 1.48500 * 109.47240 * 25.02055 * 21 19 17 24 24 H 1.48498 * 109.47286 * 145.02542 * 21 19 17 25 25 H 1.08996 * 109.47029 * 181.80895 * 1 2 3 26 26 H 1.09001 * 109.47150 * 301.81212 * 1 2 3 27 27 H 1.09008 * 109.47119 * 61.81589 * 1 2 3 28 28 H 1.09000 * 109.47021 * 240.00439 * 2 1 3 29 29 H 1.08992 * 109.46787 * 120.00503 * 2 1 3 30 30 H 1.09000 * 109.46932 * 181.85390 * 3 2 1 31 31 H 1.09003 * 109.46856 * 55.13558 * 4 3 2 32 32 H 1.09006 * 109.46946 * 175.13009 * 4 3 2 33 33 H 1.09000 * 109.47647 * 305.67909 * 5 4 3 34 34 H 1.09008 * 109.46917 * 65.68039 * 5 4 3 35 35 H 1.09004 * 109.47163 * 185.67337 * 5 4 3 36 36 H 1.09011 * 109.47058 * 305.00065 * 6 3 2 37 37 H 1.08999 * 109.47563 * 185.00200 * 6 3 2 38 38 H 0.96996 * 120.00176 * 0.02562 * 7 6 3 39 39 H 1.08995 * 109.46754 * 59.99985 * 10 8 7 40 40 H 1.08994 * 109.46700 * 299.99885 * 10 8 7 41 41 H 1.08000 * 119.87644 * 0.02562 * 12 11 10 42 42 H 1.08001 * 119.75501 * 179.69618 * 13 12 11 43 43 H 1.08002 * 119.87619 * 180.02562 * 14 13 12 44 44 H 1.07994 * 120.12812 * 180.02562 * 15 14 13 45 45 H 0.96995 * 119.99541 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4923 2.1771 -1.2253 5 6 2.0613 1.5436 -2.4963 6 6 1.5685 2.1501 1.2719 7 7 2.1886 1.5197 2.4399 8 6 1.9181 1.9802 3.6774 9 8 1.1609 2.9162 3.8240 10 6 2.5565 1.3320 4.8789 11 6 2.0920 2.0289 6.1317 12 6 2.8474 3.0404 6.6801 13 6 2.4259 3.6787 7.8361 14 6 1.2376 3.3118 8.4492 15 6 0.4632 2.3076 7.9151 16 6 0.8813 1.6526 6.7417 17 6 0.0935 0.6197 6.1834 18 1 0.5576 -0.1497 5.5843 19 6 -1.2878 0.5943 6.4072 20 7 -1.8989 1.6642 6.8468 21 14 -2.2587 -0.9672 6.0783 22 1 -2.8384 -0.9111 4.7122 23 1 -1.3574 -2.1425 6.1856 24 1 -3.3523 -1.0894 7.0755 25 1 -0.3633 -1.0271 0.0324 26 1 -0.3633 0.5417 0.8733 27 1 -0.3634 0.4854 -0.9059 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.1295 1.4426 -0.0332 31 1 0.4049 2.1026 -1.2375 32 1 1.7840 3.2264 -1.1802 33 1 3.1497 1.5272 -2.4383 34 1 1.6872 0.5244 -2.5931 35 1 1.7524 2.1279 -3.3632 36 1 0.4840 2.0725 1.3501 37 1 1.8555 3.2008 1.2309 38 1 2.7945 0.7713 2.3227 39 1 3.6408 1.4096 4.8002 40 1 2.2694 0.2814 4.9203 41 1 3.7745 3.3347 6.2106 42 1 3.0273 4.4680 8.2623 43 1 0.9185 3.8162 9.3493 44 1 -0.4622 2.0237 8.3940 45 1 -2.8563 1.6467 7.0016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776896628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:50 Heat of formation + Delta-G solvation = -65.603390 kcal Electronic energy + Delta-G solvation = -23243.371363 eV Core-core repulsion = 20030.515199 eV Total energy + Delta-G solvation = -3212.856164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80917 -39.33633 -38.40864 -35.46508 -34.85112 -33.39853 -31.99239 -31.33993 -29.77267 -28.09420 -26.82229 -25.24589 -24.02524 -22.81835 -21.98485 -20.97770 -19.96907 -19.05510 -17.75224 -17.37366 -16.95051 -16.79514 -16.18500 -16.12229 -15.74829 -15.33383 -15.01273 -14.58155 -14.42283 -14.37232 -13.85941 -13.57139 -13.54376 -13.29529 -13.28199 -12.94086 -12.75922 -12.75673 -12.57221 -12.47391 -12.36525 -12.10853 -12.03845 -11.48253 -11.33107 -11.31107 -11.24147 -11.16157 -11.00824 -10.67171 -9.91026 -9.20933 -9.16044 -8.56499 -6.25454 1.01012 1.14047 1.34764 1.47617 1.53524 1.94180 2.20432 2.46410 2.82385 3.76432 3.79180 3.89245 3.96532 4.18455 4.36586 4.40991 4.41860 4.49274 4.56599 4.59669 4.64533 4.70592 4.72810 4.79523 4.84262 4.87453 4.99676 5.03181 5.07962 5.13835 5.25938 5.29456 5.32712 5.37380 5.37545 5.43807 5.56223 5.60891 5.66461 5.80353 6.05400 6.15468 6.22733 6.45020 6.73278 6.80225 7.00669 7.13569 7.56211 8.41453 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.004967 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.731554 B = 5635.375879 C = 7089.525265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 C -0.086 4.086 4 C -0.121 4.121 5 C -0.146 4.146 6 C 0.122 3.878 7 N -0.722 5.722 8 C 0.514 3.486 9 O -0.577 6.577 10 C -0.068 4.068 11 C -0.186 4.186 12 C -0.092 4.092 13 C -0.244 4.244 14 C -0.117 4.117 15 C -0.196 4.196 16 C 0.097 3.903 17 C -0.484 4.484 18 H 0.082 0.918 19 C 0.031 3.969 20 N -0.833 5.833 21 Si 0.973 3.027 22 H -0.270 1.270 23 H -0.248 1.248 24 H -0.269 1.269 25 H 0.055 0.945 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.412 0.588 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.152 -5.752 -15.603 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.154 4.154 3 C -0.105 4.105 4 C -0.159 4.159 5 C -0.203 4.203 6 C -0.002 4.002 7 N -0.376 5.376 8 C 0.302 3.698 9 O -0.456 6.456 10 C -0.108 4.108 11 C -0.187 4.187 12 C -0.111 4.111 13 C -0.263 4.263 14 C -0.136 4.136 15 C -0.216 4.216 16 C 0.095 3.905 17 C -0.514 4.514 18 H 0.100 0.900 19 C -0.183 4.183 20 N -0.459 5.459 21 Si 0.794 3.206 22 H -0.196 1.196 23 H -0.171 1.171 24 H -0.194 1.194 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.249 0.751 39 H 0.132 0.868 40 H 0.117 0.883 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.379 -4.989 -15.450 17.833 hybrid contribution -0.870 -0.353 0.321 0.992 sum 6.509 -5.342 -15.129 17.314 Atomic orbital electron populations 1.21903 0.96941 1.01509 1.01335 1.21562 0.95426 0.95555 1.02838 1.21387 1.01394 0.95398 0.92299 1.21557 1.00900 0.99388 0.94082 1.21752 1.01266 1.01058 0.96263 1.21413 0.97140 0.96464 0.85146 1.45876 1.49647 1.37136 1.04960 1.21168 0.80631 0.82926 0.85119 1.90687 1.37392 1.30864 1.86616 1.20303 1.00947 1.00267 0.89256 1.19499 0.99042 1.01953 0.98250 1.20743 0.98911 0.95537 0.95860 1.20711 0.99309 1.05662 1.00659 1.20947 0.95546 0.97675 0.99395 1.21294 1.00714 1.01380 0.98203 1.17738 0.91258 0.91429 0.90071 1.19715 0.92489 1.09654 1.29566 0.89976 1.26755 0.99355 0.99667 0.92497 1.69944 1.11280 1.29522 1.35200 0.85337 0.78108 0.78595 0.78571 1.19572 1.17089 1.19386 0.92572 0.94997 0.91577 0.89549 0.91972 0.88926 0.91967 0.92142 0.92042 0.92017 0.92372 0.93909 0.93433 0.75073 0.86760 0.88291 0.86533 0.86747 0.87800 0.88692 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.21 71.98 0.66 -2.66 16 2 C -0.12 -1.98 5.31 30.59 0.16 -1.82 16 3 C -0.09 -1.55 2.20 -10.79 -0.02 -1.57 16 4 C -0.12 -1.99 5.14 30.59 0.16 -1.83 16 5 C -0.15 -1.80 9.52 71.98 0.69 -1.11 16 6 C 0.12 3.37 4.88 86.38 0.42 3.79 16 7 N -0.72 -21.06 5.27 -463.04 -2.44 -23.49 16 8 C 0.51 20.86 7.82 87.66 0.69 21.55 16 9 O -0.58 -30.66 16.03 -3.04 -0.05 -30.71 16 10 C -0.07 -2.61 5.35 29.10 0.16 -2.46 16 11 C -0.19 -9.06 4.43 -19.41 -0.09 -9.14 16 12 C -0.09 -4.24 9.66 22.22 0.21 -4.02 16 13 C -0.24 -11.38 10.05 22.46 0.23 -11.15 16 14 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16 15 C -0.20 -11.11 8.68 22.73 0.20 -10.91 16 16 C 0.10 5.42 5.56 -21.29 -0.12 5.30 16 17 C -0.48 -26.44 8.46 23.46 0.20 -26.24 16 18 H 0.08 4.16 6.37 -2.91 -0.02 4.14 16 19 C 0.03 1.64 5.16 85.26 0.44 2.08 16 20 N -0.83 -47.27 11.00 21.83 0.24 -47.03 16 21 Si 0.97 39.95 29.59 68.60 2.03 41.98 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 24 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.03 0.86 6.28 -2.39 -0.01 0.84 16 27 H 0.07 1.21 6.39 -2.38 -0.02 1.20 16 28 H 0.09 1.12 6.78 -2.39 -0.02 1.11 16 29 H 0.06 1.08 7.14 -2.39 -0.02 1.07 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.11 6.17 -2.39 -0.01 1.10 16 32 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.70 6.89 -2.38 -0.02 0.69 16 35 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 36 H 0.04 1.42 6.19 -2.38 -0.01 1.40 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.41 8.73 7.65 -92.71 -0.71 8.02 16 39 H 0.11 3.37 8.06 -2.39 -0.02 3.35 16 40 H 0.10 3.61 6.49 -2.39 -0.02 3.59 16 41 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 42 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 43 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 44 H 0.10 5.62 6.25 -2.91 -0.02 5.61 16 45 H 0.28 14.62 8.30 -92.71 -0.77 13.85 16 Total: -1.00 -72.63 356.64 4.26 -68.37 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: 0.27 Total: 36.79 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 4.20 Total: -45.91 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -2.20 Total: -70.53 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.05 Total: -30.71 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -72.63 4.26 -68.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776896628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.769 kcal (2) G-P(sol) polarization free energy of solvation -72.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds