Wall clock time and date at job start Tue Mar 31 2020 06:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46855 * 2 1 4 4 C 1.52989 * 109.47318 * 59.99869 * 3 2 1 5 5 C 1.52997 * 109.46975 * 299.99534 * 3 2 1 6 6 N 1.46503 * 109.46820 * 179.97438 * 3 2 1 7 7 C 1.46497 * 120.00047 * 0.02562 * 6 3 2 8 8 C 1.34777 * 120.00051 * 179.97438 * 6 3 2 9 9 O 1.21283 * 119.99353 * 0.02562 * 8 6 3 10 10 C 1.50692 * 119.99931 * 180.02562 * 8 6 3 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 6 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.08994 * 109.47317 * 300.00158 * 1 2 3 26 26 H 1.09005 * 109.46768 * 60.00334 * 1 2 3 27 27 H 1.08996 * 109.46717 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47317 * 239.99842 * 2 1 3 29 29 H 1.08997 * 109.47023 * 119.99696 * 2 1 3 30 30 H 1.09006 * 109.47417 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47514 * 299.99990 * 4 3 2 32 32 H 1.09005 * 109.47367 * 59.99683 * 4 3 2 33 33 H 1.09000 * 109.47731 * 300.00032 * 5 3 2 34 34 H 1.08998 * 109.47252 * 60.00667 * 5 3 2 35 35 H 1.09001 * 109.47447 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.47406 * 269.99981 * 7 6 3 37 37 H 1.09001 * 109.47207 * 29.99569 * 7 6 3 38 38 H 1.09001 * 109.47275 * 149.99291 * 7 6 3 39 39 H 1.09000 * 109.47297 * 60.00731 * 10 8 6 40 40 H 1.08997 * 109.47185 * 300.00030 * 10 8 6 41 41 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 42 42 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 43 43 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 44 44 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 45 45 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2491 5 6 1.5301 2.1637 -1.2493 6 7 3.5050 1.4425 0.0006 7 6 4.2375 0.1738 0.0005 8 6 4.1789 2.6097 0.0002 9 8 3.5724 3.6600 -0.0002 10 6 5.6859 2.6097 0.0003 11 6 6.1882 4.0305 0.0004 12 6 6.5104 4.6496 -1.1860 13 6 6.9790 5.9540 -1.1882 14 6 7.1221 6.6524 0.0010 15 6 6.8000 6.0557 1.1984 16 6 6.3235 4.7316 1.2127 17 6 5.9889 4.1084 2.4370 18 1 6.0346 3.0330 2.5257 19 6 5.5984 4.8850 3.5337 20 7 5.2346 6.1292 3.3578 21 14 5.5969 4.1451 5.2490 22 1 4.2378 3.6395 5.5688 23 1 6.5683 3.0232 5.3049 24 1 5.9836 5.1844 6.2367 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8937 3.1914 1.2494 31 1 0.4400 2.1638 1.2492 32 1 1.8933 1.6500 2.1392 33 1 1.8934 1.6499 -2.1393 34 1 0.4401 2.1637 -1.2493 35 1 1.8937 3.1913 -1.2496 36 1 4.4188 -0.1412 1.0282 37 1 3.6486 -0.5857 -0.5137 38 1 5.1901 0.3043 -0.5130 39 1 6.0492 2.0956 -0.8896 40 1 6.0491 2.0962 0.8904 41 1 6.4022 4.1152 -2.1183 42 1 7.2340 6.4303 -2.1234 43 1 7.4878 7.6685 -0.0124 44 1 6.9119 6.6017 2.1234 45 1 4.9643 6.6677 4.1180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776914359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:17 Heat of formation + Delta-G solvation = -21.719709 kcal Electronic energy + Delta-G solvation = -24211.311487 eV Core-core repulsion = 21000.358262 eV Total energy + Delta-G solvation = -3210.953225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.90653 -37.69751 -36.37306 -33.57877 -33.53269 -31.51688 -29.93676 -29.37398 -27.00505 -26.93534 -25.88230 -24.95198 -24.11658 -20.90483 -20.62932 -19.13004 -17.78824 -17.07804 -16.24243 -16.04923 -15.41368 -15.14130 -14.56583 -14.44469 -13.77279 -13.60625 -13.56196 -12.95397 -12.75322 -12.70602 -12.53529 -12.49038 -12.09292 -11.72365 -11.62339 -11.49313 -11.43565 -11.37643 -11.09279 -11.06074 -11.00088 -10.87157 -10.63950 -10.55608 -10.45635 -10.35082 -9.41606 -9.27675 -9.07829 -8.70541 -8.10997 -7.24654 -7.23315 -6.64319 -4.24768 2.84623 3.02149 3.10006 3.13377 3.31690 3.51028 3.55148 3.98802 4.73159 4.77129 4.93630 5.16169 5.27113 5.40043 5.44079 5.48589 5.63009 5.66381 5.83273 5.86451 5.89261 5.93021 5.96997 6.01740 6.03140 6.12046 6.17712 6.23632 6.28462 6.35048 6.44753 6.57835 6.65631 6.77280 6.84691 7.16436 7.18069 7.35328 7.48868 7.70772 7.96119 8.03066 8.12206 8.19393 8.39502 8.71768 8.98471 9.07444 9.08543 10.30621 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.006311 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.790651 B = 4435.305148 C = 5624.434436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C 0.177 3.823 4 C -0.164 4.164 5 C -0.162 4.162 6 N -0.626 5.626 7 C 0.077 3.923 8 C 0.520 3.480 9 O -0.505 6.505 10 C -0.067 4.067 11 C -0.180 4.180 12 C -0.081 4.081 13 C -0.242 4.242 14 C -0.106 4.106 15 C -0.162 4.162 16 C 0.131 3.869 17 C -0.458 4.458 18 H 0.073 0.927 19 C 0.079 3.921 20 N -0.790 5.790 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.261 1.261 24 H -0.276 1.276 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.218 -12.133 -3.967 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C 0.093 3.907 4 C -0.222 4.222 5 C -0.220 4.220 6 N -0.363 5.363 7 C -0.067 4.067 8 C 0.309 3.691 9 O -0.378 6.378 10 C -0.107 4.107 11 C -0.182 4.182 12 C -0.099 4.099 13 C -0.261 4.261 14 C -0.125 4.125 15 C -0.181 4.181 16 C 0.129 3.871 17 C -0.488 4.488 18 H 0.091 0.909 19 C -0.138 4.138 20 N -0.415 5.415 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.185 1.185 24 H -0.201 1.201 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.635 -11.332 -3.828 13.222 hybrid contribution -0.116 -0.358 0.860 0.939 sum -5.751 -11.689 -2.968 13.362 Atomic orbital electron populations 1.21876 0.95175 1.01459 1.02505 1.21847 0.96445 0.95784 1.02011 1.20241 0.79871 0.94689 0.95917 1.22259 1.00173 1.03468 0.96299 1.22253 1.00458 1.03050 0.96265 1.48153 1.05321 1.06346 1.76484 1.21767 0.97036 0.86477 1.01422 1.20978 0.90529 0.82475 0.75095 1.90629 1.69714 1.30903 1.46594 1.20289 0.90800 0.97661 1.01945 1.19022 1.10770 0.94972 0.93422 1.20274 0.99496 0.94790 0.95355 1.20280 1.13585 0.96002 0.96234 1.20664 1.00722 0.97474 0.93592 1.21268 1.03437 0.96967 0.96478 1.17313 0.87118 0.91410 0.91308 1.19422 1.40314 0.94246 0.94782 0.90867 1.25814 0.92669 0.94535 1.00795 1.69842 1.30828 1.08225 1.32642 0.86458 0.79306 0.79949 0.81958 1.19747 1.18510 1.20070 0.92128 0.92227 0.92826 0.91567 0.91517 0.89733 0.92403 0.93091 0.93317 0.92223 0.90094 0.93191 0.91375 0.91181 0.91077 0.89283 0.89910 0.89786 0.89693 0.86646 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.21 37.16 0.34 -1.11 16 2 C -0.12 -1.35 3.75 -26.73 -0.10 -1.45 16 3 C 0.18 2.60 0.81 -131.82 -0.11 2.49 16 4 C -0.16 -2.69 8.05 37.15 0.30 -2.39 16 5 C -0.16 -2.41 8.05 37.16 0.30 -2.11 16 6 N -0.63 -10.10 2.82 -166.60 -0.47 -10.57 16 7 C 0.08 0.92 9.40 59.85 0.56 1.48 16 8 C 0.52 10.69 7.09 -10.99 -0.08 10.62 16 9 O -0.51 -12.53 12.24 5.56 0.07 -12.46 16 10 C -0.07 -1.35 3.90 -29.04 -0.11 -1.47 16 11 C -0.18 -4.40 4.43 -103.91 -0.46 -4.86 16 12 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 13 C -0.24 -5.73 10.05 -39.29 -0.39 -6.12 16 14 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 15 C -0.16 -4.39 8.68 -38.87 -0.34 -4.72 16 16 C 0.13 3.53 5.56 -106.82 -0.59 2.94 16 17 C -0.46 -12.16 8.46 -37.74 -0.32 -12.48 16 18 H 0.07 1.85 6.36 -52.48 -0.33 1.51 16 19 C 0.08 2.05 5.16 -17.34 -0.09 1.96 16 20 N -0.79 -21.34 10.98 55.55 0.61 -20.73 16 21 Si 0.90 19.17 29.59 -169.99 -5.03 14.14 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 26 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.66 6.88 -51.93 -0.36 0.30 16 29 H 0.07 0.71 7.78 -51.93 -0.40 0.31 16 30 H 0.08 1.75 6.17 -51.93 -0.32 1.43 16 31 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 35 H 0.08 1.50 6.17 -51.93 -0.32 1.18 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.65 5.76 -51.93 -0.30 0.35 16 38 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 39 H 0.07 1.21 7.31 -51.93 -0.38 0.83 16 40 H 0.09 1.74 6.45 -51.93 -0.33 1.41 16 41 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.08 1.89 8.06 -52.49 -0.42 1.47 16 44 H 0.12 3.20 6.23 -52.49 -0.33 2.88 16 45 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -30.92 345.54 -8.33 -39.25 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.84 Total: 7.69 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -1.87 Total: -22.53 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.14 Total: -31.30 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.07 Total: -12.46 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.92 -8.33 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776914359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.528 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds