Wall clock time and date at job start Tue Mar 31 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46855 * 2 1 4 4 C 1.52989 * 109.47318 * 59.99869 * 3 2 1 5 5 C 1.52997 * 109.46975 * 299.99534 * 3 2 1 6 6 N 1.46503 * 109.46820 * 179.97438 * 3 2 1 7 7 C 1.46497 * 120.00047 * 0.02562 * 6 3 2 8 8 C 1.34777 * 120.00051 * 179.97438 * 6 3 2 9 9 O 1.21283 * 119.99353 * 0.02562 * 8 6 3 10 10 C 1.50692 * 119.99931 * 180.02562 * 8 6 3 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 6 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.08994 * 109.47317 * 300.00158 * 1 2 3 26 26 H 1.09005 * 109.46768 * 60.00334 * 1 2 3 27 27 H 1.08996 * 109.46717 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47317 * 239.99842 * 2 1 3 29 29 H 1.08997 * 109.47023 * 119.99696 * 2 1 3 30 30 H 1.09006 * 109.47417 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47514 * 299.99990 * 4 3 2 32 32 H 1.09005 * 109.47367 * 59.99683 * 4 3 2 33 33 H 1.09000 * 109.47731 * 300.00032 * 5 3 2 34 34 H 1.08998 * 109.47252 * 60.00667 * 5 3 2 35 35 H 1.09001 * 109.47447 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.47406 * 269.99981 * 7 6 3 37 37 H 1.09001 * 109.47207 * 29.99569 * 7 6 3 38 38 H 1.09001 * 109.47275 * 149.99291 * 7 6 3 39 39 H 1.09000 * 109.47297 * 60.00731 * 10 8 6 40 40 H 1.08997 * 109.47185 * 300.00030 * 10 8 6 41 41 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 42 42 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 43 43 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 44 44 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 45 45 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2491 5 6 1.5301 2.1637 -1.2493 6 7 3.5050 1.4425 0.0006 7 6 4.2375 0.1738 0.0005 8 6 4.1789 2.6097 0.0002 9 8 3.5724 3.6600 -0.0002 10 6 5.6859 2.6097 0.0003 11 6 6.1882 4.0305 0.0004 12 6 6.5104 4.6496 -1.1860 13 6 6.9790 5.9540 -1.1882 14 6 7.1221 6.6524 0.0010 15 6 6.8000 6.0557 1.1984 16 6 6.3235 4.7316 1.2127 17 6 5.9889 4.1084 2.4370 18 1 6.0346 3.0330 2.5257 19 6 5.5984 4.8850 3.5337 20 7 5.2346 6.1292 3.3578 21 14 5.5969 4.1451 5.2490 22 1 4.2378 3.6395 5.5688 23 1 6.5683 3.0232 5.3049 24 1 5.9836 5.1844 6.2367 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8937 3.1914 1.2494 31 1 0.4400 2.1638 1.2492 32 1 1.8933 1.6500 2.1392 33 1 1.8934 1.6499 -2.1393 34 1 0.4401 2.1637 -1.2493 35 1 1.8937 3.1913 -1.2496 36 1 4.4188 -0.1412 1.0282 37 1 3.6486 -0.5857 -0.5137 38 1 5.1901 0.3043 -0.5130 39 1 6.0492 2.0956 -0.8896 40 1 6.0491 2.0962 0.8904 41 1 6.4022 4.1152 -2.1183 42 1 7.2340 6.4303 -2.1234 43 1 7.4878 7.6685 -0.0124 44 1 6.9119 6.6017 2.1234 45 1 4.9643 6.6677 4.1180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776914359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:16 Heat of formation + Delta-G solvation = -38.356097 kcal Electronic energy + Delta-G solvation = -24212.032895 eV Core-core repulsion = 21000.358262 eV Total energy + Delta-G solvation = -3211.674633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30061 -39.44404 -37.84659 -35.47197 -34.86434 -33.18237 -31.34574 -30.96599 -28.59680 -28.26104 -27.19477 -26.71333 -25.16721 -22.82859 -22.21074 -20.67690 -19.19318 -18.93386 -17.53960 -17.46401 -17.14369 -16.52733 -16.21870 -15.72177 -15.43390 -15.17772 -14.99087 -14.40648 -14.34314 -14.04770 -13.75364 -13.63139 -13.52046 -13.27578 -13.06714 -12.93108 -12.86606 -12.73317 -12.68604 -12.53317 -12.44461 -12.33276 -12.15527 -12.10067 -11.58312 -11.51754 -11.30482 -11.16013 -11.01182 -10.27916 -9.41908 -9.21131 -9.15105 -8.56888 -6.25430 1.00626 1.13863 1.33313 1.46058 1.52302 1.98010 2.19417 2.25064 2.81120 3.65160 3.81025 3.97323 4.13636 4.17599 4.30921 4.38342 4.41352 4.48441 4.51528 4.59044 4.67118 4.72589 4.76140 4.77549 4.79817 4.86064 4.96030 4.98740 5.03172 5.06015 5.14443 5.14782 5.24978 5.25312 5.37263 5.49454 5.54354 5.56066 5.79450 5.93276 6.05418 6.15170 6.22586 6.44919 6.65488 6.76561 7.00613 7.13239 7.58235 8.40747 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.006311 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.790651 B = 4435.305148 C = 5624.434436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C 0.171 3.829 4 C -0.159 4.159 5 C -0.156 4.156 6 N -0.619 5.619 7 C 0.065 3.935 8 C 0.515 3.485 9 O -0.561 6.561 10 C -0.065 4.065 11 C -0.184 4.184 12 C -0.092 4.092 13 C -0.243 4.243 14 C -0.117 4.117 15 C -0.195 4.195 16 C 0.098 3.902 17 C -0.481 4.481 18 H 0.078 0.922 19 C 0.032 3.968 20 N -0.832 5.832 21 Si 0.970 3.030 22 H -0.270 1.270 23 H -0.249 1.249 24 H -0.268 1.268 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 -15.466 -4.844 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C 0.087 3.913 4 C -0.217 4.217 5 C -0.214 4.214 6 N -0.354 5.354 7 C -0.076 4.076 8 C 0.304 3.696 9 O -0.438 6.438 10 C -0.105 4.105 11 C -0.186 4.186 12 C -0.110 4.110 13 C -0.262 4.262 14 C -0.136 4.136 15 C -0.214 4.214 16 C 0.096 3.904 17 C -0.511 4.511 18 H 0.096 0.904 19 C -0.181 4.181 20 N -0.458 5.458 21 Si 0.791 3.209 22 H -0.196 1.196 23 H -0.172 1.172 24 H -0.193 1.193 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.109 -14.721 -4.720 16.622 hybrid contribution 0.016 0.675 1.003 1.209 sum -6.093 -14.046 -3.717 15.756 Atomic orbital electron populations 1.21881 0.93980 1.02824 1.02263 1.21810 0.97370 0.92617 1.03326 1.20446 0.79039 0.97180 0.94666 1.22193 1.01585 1.00551 0.97401 1.22172 1.01707 1.00555 0.96969 1.48187 1.06242 1.06528 1.74454 1.22111 0.97778 0.85084 1.02654 1.21014 0.90645 0.83053 0.74851 1.90627 1.70614 1.33186 1.49377 1.20308 0.90914 0.95466 1.03781 1.19509 1.09258 0.96945 0.92880 1.20698 0.98829 0.95080 0.96381 1.20690 1.12390 0.96273 0.96893 1.20937 1.00627 0.98534 0.93472 1.21283 1.05727 0.97777 0.96655 1.17716 0.87932 0.91927 0.92833 1.19655 1.41254 0.94598 0.95587 0.90372 1.26718 0.91801 0.94814 1.04811 1.69939 1.32161 1.09826 1.33922 0.85377 0.79402 0.79443 0.76649 1.19568 1.17200 1.19275 0.92825 0.92060 0.90677 0.89578 0.90765 0.94799 0.90178 0.93459 0.91983 0.90228 0.94440 0.92435 0.88092 0.90114 0.87458 0.88946 0.86809 0.86820 0.87828 0.88676 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.21 71.98 0.66 -1.68 16 2 C -0.11 -2.06 3.75 30.60 0.11 -1.94 16 3 C 0.17 4.74 0.81 3.60 0.00 4.74 16 4 C -0.16 -5.25 8.05 71.98 0.58 -4.67 16 5 C -0.16 -4.47 8.05 71.98 0.58 -3.89 16 6 N -0.62 -18.98 2.82 -799.40 -2.26 -21.23 16 7 C 0.07 1.34 9.40 127.77 1.20 2.54 16 8 C 0.52 21.16 7.09 87.65 0.62 21.78 16 9 O -0.56 -28.95 12.24 -3.04 -0.04 -28.99 16 10 C -0.07 -2.57 3.90 29.10 0.11 -2.46 16 11 C -0.18 -9.06 4.43 -19.40 -0.09 -9.14 16 12 C -0.09 -4.24 9.66 22.22 0.21 -4.03 16 13 C -0.24 -11.38 10.05 22.46 0.23 -11.15 16 14 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16 15 C -0.19 -11.04 8.68 22.73 0.20 -10.84 16 16 C 0.10 5.49 5.56 -21.29 -0.12 5.37 16 17 C -0.48 -26.44 8.46 23.46 0.20 -26.24 16 18 H 0.08 4.04 6.36 -2.91 -0.02 4.02 16 19 C 0.03 1.72 5.16 85.26 0.44 2.16 16 20 N -0.83 -47.29 10.98 21.83 0.24 -47.05 16 21 Si 0.97 40.25 29.59 68.60 2.03 42.28 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 25 H 0.05 0.90 6.43 -2.39 -0.02 0.89 16 26 H 0.06 0.93 6.43 -2.38 -0.02 0.92 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 1.26 6.88 -2.39 -0.02 1.24 16 29 H 0.07 1.27 7.78 -2.39 -0.02 1.25 16 30 H 0.03 1.46 6.17 -2.38 -0.01 1.45 16 31 H 0.08 2.18 6.43 -2.39 -0.02 2.17 16 32 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.90 6.43 -2.39 -0.02 1.88 16 35 H 0.04 1.41 6.17 -2.39 -0.01 1.40 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.42 5.76 -2.39 -0.01 1.41 16 38 H 0.08 1.50 6.44 -2.39 -0.02 1.48 16 39 H 0.11 3.35 7.31 -2.39 -0.02 3.34 16 40 H 0.09 3.55 6.45 -2.39 -0.02 3.53 16 41 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 42 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 43 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 44 H 0.10 5.65 6.23 -2.91 -0.02 5.63 16 45 H 0.28 14.64 8.30 -92.71 -0.77 13.88 16 Total: -1.00 -72.46 345.54 6.12 -66.33 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.98 Total: 33.84 kcal Atomic # 6 Polarization: -50.35 SS G_CDS: 5.17 Total: -45.18 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -2.02 Total: -68.28 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.04 Total: -28.99 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -72.46 6.12 -66.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776914359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.976 kcal (2) G-P(sol) polarization free energy of solvation -72.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds