Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38298 * 119.96362 * 2 1 4 4 C 1.38245 * 120.10362 * 179.72642 * 3 2 1 5 5 C 1.50705 * 119.97034 * 180.27858 * 4 3 2 6 6 C 1.38166 * 120.05913 * 0.55159 * 4 3 2 7 7 C 1.50701 * 120.02825 * 179.75067 * 6 4 3 8 8 H 1.09003 * 109.46707 * 345.65549 * 7 6 4 9 9 C 1.52993 * 109.47230 * 105.65783 * 7 6 4 10 10 N 1.46903 * 109.46874 * 225.66395 * 7 6 4 11 11 C 1.46903 * 110.99897 * 151.15703 * 10 7 6 12 12 C 1.53002 * 109.46718 * 185.30130 * 11 10 7 13 13 C 1.50693 * 115.54941 * 80.42587 * 12 11 10 14 14 H 1.08007 * 119.99933 * 219.72176 * 13 12 11 15 15 C 1.37876 * 120.00252 * 39.72063 * 13 12 11 16 16 N 1.31514 * 120.00044 * 17.19655 * 15 13 12 17 17 Si 1.86806 * 119.99925 * 197.19179 * 15 13 12 18 18 H 1.48495 * 109.46890 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46807 * 120.00417 * 17 15 13 20 20 H 1.48499 * 109.46927 * 240.00102 * 17 15 13 21 21 C 1.52995 * 117.49781 * 294.74982 * 12 11 10 22 22 C 1.52992 * 60.03428 * 252.50226 * 21 12 11 23 23 C 1.38710 * 119.94137 * 359.46966 * 6 4 3 24 24 O 1.35902 * 120.05257 * 180.22687 * 23 6 4 25 25 C 1.38116 * 119.97922 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.46931 * 269.97159 * 1 2 3 27 27 H 1.08994 * 109.47554 * 29.97850 * 1 2 3 28 28 H 1.09002 * 109.46695 * 149.98139 * 1 2 3 29 29 H 1.07993 * 119.94432 * 359.97438 * 3 2 1 30 30 H 1.08999 * 109.46722 * 270.27973 * 5 4 3 31 31 H 1.09005 * 109.46562 * 30.27163 * 5 4 3 32 32 H 1.08996 * 109.47498 * 150.27126 * 5 4 3 33 33 H 1.08993 * 109.47435 * 300.00050 * 9 7 6 34 34 H 1.08997 * 109.47033 * 60.00203 * 9 7 6 35 35 H 1.09000 * 109.46957 * 179.97438 * 9 7 6 36 36 H 1.00901 * 110.99838 * 275.10706 * 10 7 6 37 37 H 1.08999 * 109.47127 * 65.30109 * 11 10 7 38 38 H 1.08999 * 109.46953 * 305.29676 * 11 10 7 39 39 H 0.96999 * 120.00004 * 184.98562 * 16 15 13 40 40 H 1.08998 * 117.50113 * 0.02562 * 21 12 11 41 41 H 1.09005 * 117.49947 * 144.99833 * 21 12 11 42 42 H 1.09010 * 117.49874 * 107.50417 * 22 21 12 43 43 H 1.08999 * 117.50130 * 252.52119 * 22 21 12 44 44 H 0.96705 * 113.99759 * 90.00617 * 24 23 6 45 45 H 1.07999 * 120.02368 * 359.97069 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5802 1.2015 0.0057 5 6 4.3298 2.5089 0.0120 6 6 4.2752 0.0074 -0.0001 7 6 5.7822 0.0119 0.0005 8 1 6.1426 1.0100 -0.2490 9 6 6.2929 -0.3828 1.3876 10 7 6.2751 -0.9495 -0.9949 11 6 7.5821 -0.5367 -1.5233 12 6 8.0007 -1.4865 -2.6475 13 6 7.3759 -1.2174 -3.9921 14 1 7.0588 -2.0409 -4.6148 15 6 7.2089 0.0802 -4.4275 16 7 7.8788 1.0569 -3.8557 17 14 6.0314 0.4507 -5.8295 18 1 5.4052 -0.8121 -6.2967 19 1 4.9751 1.3810 -5.3560 20 1 6.7775 1.0780 -6.9498 21 6 8.2745 -2.9449 -2.2748 22 6 9.4370 -2.0153 -2.6283 23 6 3.5847 -1.1956 -0.0005 24 8 4.2660 -2.3715 -0.0015 25 6 2.1972 -1.1964 -0.0005 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3633 -0.8899 -0.5141 29 1 1.6563 2.1325 -0.0004 30 1 4.5104 2.8291 -1.0141 31 1 3.7384 3.2642 0.5296 32 1 5.2826 2.3790 0.5252 33 1 5.9272 0.3305 2.1260 34 1 5.9325 -1.3808 1.6369 35 1 7.3829 -0.3800 1.3878 36 1 6.3192 -1.8802 -0.6077 37 1 8.3236 -0.5695 -0.7250 38 1 7.5122 0.4789 -1.9129 39 1 7.7084 1.9768 -4.1121 40 1 8.1560 -3.2279 -1.2289 41 1 8.0026 -3.7098 -3.0022 42 1 10.0839 -1.6866 -1.8147 43 1 9.9299 -2.1683 -3.5884 44 1 4.4635 -2.7123 0.8816 45 1 1.6572 -2.1317 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788799338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = 0.814894 kcal Electronic energy + Delta-G solvation = -23975.367785 eV Core-core repulsion = 20765.391734 eV Total energy + Delta-G solvation = -3209.976051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03523 -37.16403 -36.68713 -35.35275 -32.92180 -32.01750 -30.45468 -29.30536 -27.05553 -26.46080 -25.56054 -24.02005 -22.28649 -21.32826 -20.87379 -19.82077 -18.83661 -17.41724 -16.55364 -15.92639 -15.47508 -14.71970 -14.57900 -14.32002 -14.02683 -13.55970 -13.49287 -13.31544 -13.16502 -12.98988 -12.77140 -12.53941 -12.43257 -12.09880 -11.91054 -11.61549 -11.33695 -11.28257 -11.07144 -10.89063 -10.84381 -10.77981 -10.40724 -10.35755 -10.09196 -9.81338 -9.15884 -9.03449 -8.55633 -8.30469 -8.09774 -7.85760 -7.24478 -5.96564 -3.89838 1.54082 1.55579 3.38358 3.46829 3.53488 3.81140 4.42189 4.54124 4.84760 4.91291 5.04983 5.15536 5.24546 5.41942 5.44481 5.46527 5.56412 5.57006 5.61551 5.67692 5.73193 5.83076 5.85394 5.97214 6.00897 6.15449 6.20688 6.24111 6.37029 6.40261 6.49367 6.63954 6.69746 6.72942 6.78170 6.81680 6.92954 7.05096 7.10598 7.19370 7.43550 7.76636 7.98711 8.08943 8.21708 8.46254 8.67013 9.03593 9.67706 11.09949 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.005960 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.934488 B = 4697.006570 C = 5413.235283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.081 4.081 3 C -0.133 4.133 4 C -0.065 4.065 5 C -0.117 4.117 6 C -0.083 4.083 7 C 0.122 3.878 8 H 0.086 0.914 9 C -0.174 4.174 10 N -0.654 5.654 11 C 0.090 3.910 12 C 0.067 3.933 13 C -0.465 4.465 14 H 0.056 0.944 15 C 0.075 3.925 16 N -0.878 5.878 17 Si 0.882 3.118 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.289 1.289 21 C -0.208 4.208 22 C -0.205 4.205 23 C 0.135 3.865 24 O -0.479 6.479 25 C -0.157 4.157 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.334 0.666 37 H -0.013 1.013 38 H 0.116 0.884 39 H 0.257 0.743 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.375 0.625 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.090 0.331 12.953 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.081 4.081 3 C -0.152 4.152 4 C -0.065 4.065 5 C -0.173 4.173 6 C -0.084 4.084 7 C 0.011 3.989 8 H 0.104 0.896 9 C -0.233 4.233 10 N -0.286 5.286 11 C -0.038 4.038 12 C 0.067 3.933 13 C -0.502 4.502 14 H 0.075 0.925 15 C -0.126 4.126 16 N -0.517 5.517 17 Si 0.710 3.290 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.215 1.215 21 C -0.245 4.245 22 C -0.244 4.244 23 C 0.090 3.910 24 O -0.287 6.287 25 C -0.175 4.175 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.005 0.995 38 H 0.134 0.866 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.229 0.771 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.393 0.850 11.744 15.705 hybrid contribution 0.021 -0.179 0.501 0.532 sum -10.371 0.671 12.245 16.061 Atomic orbital electron populations 1.20738 0.91429 1.02608 1.01851 1.19619 0.95660 0.92708 1.00154 1.20786 0.93339 0.97300 1.03727 1.19617 0.93399 0.94707 0.98806 1.20846 0.99895 0.93653 1.02952 1.20156 0.96199 0.91866 1.00186 1.20415 0.89650 0.98728 0.90133 0.89586 1.22473 1.01386 1.01071 0.98416 1.60343 1.29443 1.03691 1.35080 1.21793 0.85600 1.03770 0.92608 1.18874 0.91575 0.88013 0.94883 1.20448 1.38147 0.91937 0.99653 0.92535 1.24787 0.94877 0.96327 0.96587 1.69972 1.38013 0.99530 1.44164 0.86711 0.81693 0.78443 0.82185 1.19777 1.20885 1.21523 1.22754 1.06649 0.96551 0.98578 1.22995 0.93590 1.07639 1.00134 1.18139 0.89117 0.85021 0.98687 1.84988 1.76106 1.35849 1.31762 1.21186 0.93524 0.97954 1.04885 0.91545 0.91712 0.91729 0.86402 0.90628 0.91896 0.91194 0.92767 0.93076 0.92320 0.84605 0.99484 0.86650 0.93296 0.92005 0.90844 0.92148 0.90546 0.77050 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 36.01 0.36 -0.74 16 2 C -0.08 -1.09 5.88 -104.64 -0.62 -1.70 16 3 C -0.13 -1.85 9.35 -39.56 -0.37 -2.22 16 4 C -0.06 -0.99 5.88 -104.64 -0.62 -1.61 16 5 C -0.12 -1.58 9.24 36.01 0.33 -1.25 16 6 C -0.08 -1.38 4.96 -104.47 -0.52 -1.90 16 7 C 0.12 2.11 2.23 -68.87 -0.15 1.96 16 8 H 0.09 1.59 5.41 -51.93 -0.28 1.31 16 9 C -0.17 -2.44 9.08 37.15 0.34 -2.10 16 10 N -0.65 -13.62 5.55 -107.95 -0.60 -14.22 16 11 C 0.09 2.13 5.25 -3.82 -0.02 2.11 16 12 C 0.07 1.71 1.89 -155.63 -0.29 1.42 16 13 C -0.46 -13.17 8.98 -34.44 -0.31 -13.48 16 14 H 0.06 1.63 7.87 -52.48 -0.41 1.22 16 15 C 0.08 2.12 5.11 -17.82 -0.09 2.03 16 16 N -0.88 -24.85 11.12 55.43 0.62 -24.23 16 17 Si 0.88 22.09 29.58 -169.99 -5.03 17.06 16 18 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 C -0.21 -4.67 9.59 -26.74 -0.26 -4.93 16 22 C -0.21 -4.85 9.89 -26.70 -0.26 -5.11 16 23 C 0.14 2.17 6.45 -39.22 -0.25 1.92 16 24 O -0.48 -7.29 10.45 -19.43 -0.20 -7.49 16 25 C -0.16 -2.27 9.64 -39.44 -0.38 -2.65 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 28 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.07 0.92 6.37 -51.93 -0.33 0.59 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.63 6.74 -51.93 -0.35 0.28 16 35 H 0.06 0.85 7.84 -51.93 -0.41 0.44 16 36 H 0.33 6.59 6.33 -39.29 -0.25 6.34 16 37 H -0.01 -0.29 7.65 -51.93 -0.40 -0.69 16 38 H 0.12 3.05 5.27 -51.93 -0.27 2.78 16 39 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 40 H 0.06 1.26 8.02 -51.93 -0.42 0.84 16 41 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.06 1.34 8.08 -51.92 -0.42 0.92 16 43 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 44 H 0.37 3.85 8.19 45.56 0.37 4.23 16 45 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -30.91 358.62 -9.44 -40.34 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.52 Total: 11.39 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -3.11 Total: -28.26 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.02 Total: -38.45 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.20 Total: -7.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.91 -9.44 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788799338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.159 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds