Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38298 * 119.96362 * 2 1 4 4 C 1.38245 * 120.10362 * 179.72642 * 3 2 1 5 5 C 1.50705 * 119.97034 * 180.27858 * 4 3 2 6 6 C 1.38166 * 120.05913 * 0.55159 * 4 3 2 7 7 C 1.50701 * 120.02825 * 179.75067 * 6 4 3 8 8 H 1.09003 * 109.46707 * 345.65549 * 7 6 4 9 9 C 1.52993 * 109.47230 * 105.65783 * 7 6 4 10 10 N 1.46903 * 109.46874 * 225.66395 * 7 6 4 11 11 C 1.46903 * 110.99897 * 151.15703 * 10 7 6 12 12 C 1.53002 * 109.46718 * 185.30130 * 11 10 7 13 13 C 1.50693 * 115.54941 * 80.42587 * 12 11 10 14 14 H 1.08007 * 119.99933 * 219.72176 * 13 12 11 15 15 C 1.37876 * 120.00252 * 39.72063 * 13 12 11 16 16 N 1.31514 * 120.00044 * 17.19655 * 15 13 12 17 17 Si 1.86806 * 119.99925 * 197.19179 * 15 13 12 18 18 H 1.48495 * 109.46890 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46807 * 120.00417 * 17 15 13 20 20 H 1.48499 * 109.46927 * 240.00102 * 17 15 13 21 21 C 1.52995 * 117.49781 * 294.74982 * 12 11 10 22 22 C 1.52992 * 60.03428 * 252.50226 * 21 12 11 23 23 C 1.38710 * 119.94137 * 359.46966 * 6 4 3 24 24 O 1.35902 * 120.05257 * 180.22687 * 23 6 4 25 25 C 1.38116 * 119.97922 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.46931 * 269.97159 * 1 2 3 27 27 H 1.08994 * 109.47554 * 29.97850 * 1 2 3 28 28 H 1.09002 * 109.46695 * 149.98139 * 1 2 3 29 29 H 1.07993 * 119.94432 * 359.97438 * 3 2 1 30 30 H 1.08999 * 109.46722 * 270.27973 * 5 4 3 31 31 H 1.09005 * 109.46562 * 30.27163 * 5 4 3 32 32 H 1.08996 * 109.47498 * 150.27126 * 5 4 3 33 33 H 1.08993 * 109.47435 * 300.00050 * 9 7 6 34 34 H 1.08997 * 109.47033 * 60.00203 * 9 7 6 35 35 H 1.09000 * 109.46957 * 179.97438 * 9 7 6 36 36 H 1.00901 * 110.99838 * 275.10706 * 10 7 6 37 37 H 1.08999 * 109.47127 * 65.30109 * 11 10 7 38 38 H 1.08999 * 109.46953 * 305.29676 * 11 10 7 39 39 H 0.96999 * 120.00004 * 184.98562 * 16 15 13 40 40 H 1.08998 * 117.50113 * 0.02562 * 21 12 11 41 41 H 1.09005 * 117.49947 * 144.99833 * 21 12 11 42 42 H 1.09010 * 117.49874 * 107.50417 * 22 21 12 43 43 H 1.08999 * 117.50130 * 252.52119 * 22 21 12 44 44 H 0.96705 * 113.99759 * 90.00617 * 24 23 6 45 45 H 1.07999 * 120.02368 * 359.97069 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5802 1.2015 0.0057 5 6 4.3298 2.5089 0.0120 6 6 4.2752 0.0074 -0.0001 7 6 5.7822 0.0119 0.0005 8 1 6.1426 1.0100 -0.2490 9 6 6.2929 -0.3828 1.3876 10 7 6.2751 -0.9495 -0.9949 11 6 7.5821 -0.5367 -1.5233 12 6 8.0007 -1.4865 -2.6475 13 6 7.3759 -1.2174 -3.9921 14 1 7.0588 -2.0409 -4.6148 15 6 7.2089 0.0802 -4.4275 16 7 7.8788 1.0569 -3.8557 17 14 6.0314 0.4507 -5.8295 18 1 5.4052 -0.8121 -6.2967 19 1 4.9751 1.3810 -5.3560 20 1 6.7775 1.0780 -6.9498 21 6 8.2745 -2.9449 -2.2748 22 6 9.4370 -2.0153 -2.6283 23 6 3.5847 -1.1956 -0.0005 24 8 4.2660 -2.3715 -0.0015 25 6 2.1972 -1.1964 -0.0005 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3633 -0.8899 -0.5141 29 1 1.6563 2.1325 -0.0004 30 1 4.5104 2.8291 -1.0141 31 1 3.7384 3.2642 0.5296 32 1 5.2826 2.3790 0.5252 33 1 5.9272 0.3305 2.1260 34 1 5.9325 -1.3808 1.6369 35 1 7.3829 -0.3800 1.3878 36 1 6.3192 -1.8802 -0.6077 37 1 8.3236 -0.5695 -0.7250 38 1 7.5122 0.4789 -1.9129 39 1 7.7084 1.9768 -4.1121 40 1 8.1560 -3.2279 -1.2289 41 1 8.0026 -3.7098 -3.0022 42 1 10.0839 -1.6866 -1.8147 43 1 9.9299 -2.1683 -3.5884 44 1 4.4635 -2.7123 0.8816 45 1 1.6572 -2.1317 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788799338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -17.341299 kcal Electronic energy + Delta-G solvation = -23976.155097 eV Core-core repulsion = 20765.391734 eV Total energy + Delta-G solvation = -3210.763363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17438 -38.87854 -37.83036 -36.78794 -34.14597 -34.09712 -31.61543 -30.59779 -28.07471 -27.65290 -27.50450 -25.71663 -23.49089 -22.91867 -22.30196 -21.04745 -20.74662 -18.53646 -18.29039 -17.26298 -16.82031 -16.60819 -16.00553 -15.81161 -15.31813 -15.05054 -14.98254 -14.52956 -14.36236 -14.22013 -13.98772 -13.69512 -13.56080 -13.33554 -13.28479 -13.17735 -12.89219 -12.81616 -12.50733 -12.31363 -12.30507 -12.25232 -12.05557 -12.03917 -11.88841 -11.18306 -11.04016 -10.90698 -10.50587 -9.89027 -9.41277 -9.21322 -8.83248 -8.09029 -6.07486 0.44036 0.44508 1.36656 1.41393 1.51297 2.45990 2.71842 3.04658 3.34797 3.49095 3.79652 3.90320 3.97917 4.08306 4.24455 4.32318 4.42276 4.43875 4.53101 4.58779 4.59423 4.66195 4.73141 4.77864 4.79848 4.87555 4.92098 4.96291 4.97277 5.01408 5.06995 5.13770 5.18072 5.30716 5.32108 5.37498 5.54860 5.58481 5.65814 5.67056 5.77541 6.06911 6.09008 6.46078 6.58284 6.89846 6.99892 7.02203 7.50970 8.95979 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.005960 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.934488 B = 4697.006570 C = 5413.235283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.080 4.080 5 C -0.114 4.114 6 C -0.110 4.110 7 C 0.124 3.876 8 H 0.065 0.935 9 C -0.164 4.164 10 N -0.666 5.666 11 C 0.106 3.894 12 C 0.035 3.965 13 C -0.487 4.487 14 H 0.039 0.961 15 C 0.039 3.961 16 N -0.895 5.895 17 Si 0.932 3.068 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.281 1.281 21 C -0.184 4.184 22 C -0.205 4.205 23 C 0.124 3.876 24 O -0.494 6.494 25 C -0.169 4.169 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.141 0.859 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.339 0.661 37 H -0.008 1.008 38 H 0.084 0.916 39 H 0.259 0.741 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.394 0.606 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 0.153 14.188 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.080 4.080 3 C -0.158 4.158 4 C -0.080 4.080 5 C -0.170 4.170 6 C -0.112 4.112 7 C 0.013 3.987 8 H 0.084 0.916 9 C -0.223 4.223 10 N -0.298 5.298 11 C -0.023 4.023 12 C 0.034 3.966 13 C -0.524 4.524 14 H 0.058 0.942 15 C -0.161 4.161 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.207 1.207 21 C -0.221 4.221 22 C -0.244 4.244 23 C 0.079 3.921 24 O -0.305 6.305 25 C -0.187 4.187 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.159 0.841 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.160 0.840 37 H 0.010 0.990 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.252 0.748 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.075 0.664 12.995 17.752 hybrid contribution 0.515 -0.148 0.131 0.551 sum -11.560 0.516 13.126 17.499 Atomic orbital electron populations 1.20802 0.88849 1.03436 1.03331 1.20058 0.97571 0.92115 0.98261 1.21104 0.92868 0.98644 1.03221 1.19899 0.94403 0.94823 0.98912 1.20834 1.00265 0.93874 1.02060 1.20204 0.95638 0.92901 1.02421 1.20372 0.90464 0.96795 0.91025 0.91636 1.22348 1.00783 1.02472 0.96706 1.60244 1.27865 1.04673 1.37046 1.21419 0.87120 1.01558 0.92188 1.19001 0.92669 0.90416 0.94490 1.20644 1.38999 0.91730 1.01024 0.94232 1.25326 0.95958 0.96301 0.98536 1.70050 1.38561 0.99651 1.45141 0.85928 0.80047 0.77924 0.80223 1.20097 1.20873 1.20659 1.22736 1.04599 0.94878 0.99918 1.22963 0.93307 1.07912 1.00175 1.18317 0.89881 0.84919 0.98967 1.84917 1.76210 1.35683 1.33711 1.21431 0.93082 0.99163 1.05017 0.89614 0.90684 0.91135 0.84103 0.92527 0.89131 0.91446 0.91130 0.91366 0.93006 0.84032 0.98957 0.89791 0.93183 0.89423 0.91122 0.90706 0.91704 0.74831 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 10.01 71.24 0.71 -1.10 16 2 C -0.08 -1.96 5.88 -19.88 -0.12 -2.08 16 3 C -0.14 -3.63 9.35 22.29 0.21 -3.42 16 4 C -0.08 -2.39 5.88 -19.88 -0.12 -2.51 16 5 C -0.11 -3.04 9.24 71.24 0.66 -2.38 16 6 C -0.11 -3.64 4.96 -19.77 -0.10 -3.74 16 7 C 0.12 4.29 2.23 44.17 0.10 4.39 16 8 H 0.07 2.51 5.41 -2.39 -0.01 2.49 16 9 C -0.16 -4.40 9.08 71.98 0.65 -3.75 16 10 N -0.67 -27.76 5.55 -495.44 -2.75 -30.51 16 11 C 0.11 5.05 5.25 86.30 0.45 5.50 16 12 C 0.04 1.79 1.89 -52.91 -0.10 1.69 16 13 C -0.49 -28.04 8.98 25.60 0.23 -27.81 16 14 H 0.04 2.34 7.87 -2.91 -0.02 2.32 16 15 C 0.04 2.19 5.11 84.65 0.43 2.63 16 16 N -0.90 -51.58 11.12 21.45 0.24 -51.34 16 17 Si 0.93 45.93 29.58 68.60 2.03 47.96 16 18 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 21 C -0.18 -8.08 9.59 30.59 0.29 -7.79 16 22 C -0.21 -9.62 9.89 30.62 0.30 -9.32 16 23 C 0.12 3.86 6.45 22.50 0.15 4.00 16 24 O -0.49 -14.50 10.45 -92.44 -0.97 -15.47 16 25 C -0.17 -4.59 9.64 22.36 0.22 -4.38 16 26 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.12 8.08 -2.39 -0.02 1.11 16 28 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 29 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.09 1.84 8.09 -2.38 -0.02 1.82 16 32 H 0.07 1.79 6.37 -2.39 -0.02 1.77 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 1.57 6.74 -2.39 -0.02 1.55 16 35 H 0.05 1.44 7.84 -2.39 -0.02 1.42 16 36 H 0.34 13.15 6.33 -89.69 -0.57 12.58 16 37 H -0.01 -0.34 7.65 -2.39 -0.02 -0.36 16 38 H 0.08 4.57 5.27 -2.39 -0.01 4.56 16 39 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 40 H 0.09 3.37 8.02 -2.39 -0.02 3.35 16 41 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 42 H 0.07 3.25 8.08 -2.38 -0.02 3.23 16 43 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.39 7.50 8.19 -74.05 -0.61 6.90 16 45 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -66.51 358.62 2.34 -64.17 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -0.18 Total: 35.25 kcal Atomic # 6 Polarization: -54.04 SS G_CDS: 3.97 Total: -50.07 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.51 Total: -81.85 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.97 Total: -15.47 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -66.51 2.34 -64.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788799338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.830 kcal (2) G-P(sol) polarization free energy of solvation -66.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds