Wall clock time and date at job start Tue Mar 31 2020 05:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38296 * 119.97122 * 2 1 4 4 C 1.38242 * 120.10731 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.97138 * 180.02562 * 4 3 2 6 6 C 1.38163 * 120.06170 * 359.97438 * 4 3 2 7 7 C 1.50700 * 120.03432 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46386 * 20.02676 * 7 6 4 9 9 C 1.52993 * 109.47293 * 260.02764 * 7 6 4 10 10 N 1.46904 * 109.47208 * 140.02375 * 7 6 4 11 11 C 1.46901 * 110.99852 * 209.47329 * 10 7 6 12 12 C 1.52990 * 109.47138 * 183.96146 * 11 10 7 13 13 C 1.50701 * 115.55193 * 280.65786 * 12 11 10 14 14 H 1.07995 * 120.00242 * 144.11291 * 13 12 11 15 15 C 1.37880 * 119.99807 * 324.10687 * 13 12 11 16 16 N 1.31520 * 120.00045 * 340.11287 * 15 13 12 17 17 Si 1.86795 * 119.99955 * 160.10218 * 15 13 12 18 18 H 1.48502 * 109.46998 * 90.00554 * 17 15 13 19 19 H 1.48503 * 109.47153 * 210.00228 * 17 15 13 20 20 H 1.48500 * 109.47598 * 330.00624 * 17 15 13 21 21 C 1.53004 * 117.50327 * 134.94504 * 12 11 10 22 22 C 1.53001 * 60.00333 * 252.51252 * 21 12 11 23 23 C 1.38712 * 119.93911 * 0.27372 * 6 4 3 24 24 O 1.35902 * 120.05375 * 179.72696 * 23 6 4 25 25 C 1.38121 * 119.97213 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47680 * 89.99162 * 1 2 3 27 27 H 1.08997 * 109.47024 * 209.99965 * 1 2 3 28 28 H 1.09007 * 109.47090 * 329.99642 * 1 2 3 29 29 H 1.07999 * 119.94552 * 0.02993 * 3 2 1 30 30 H 1.08998 * 109.47096 * 263.55261 * 5 4 3 31 31 H 1.09003 * 109.46517 * 23.55024 * 5 4 3 32 32 H 1.08991 * 109.47040 * 143.54703 * 5 4 3 33 33 H 1.09000 * 109.47300 * 299.99885 * 9 7 6 34 34 H 1.09008 * 109.47408 * 59.99581 * 9 7 6 35 35 H 1.08999 * 109.47507 * 179.97438 * 9 7 6 36 36 H 1.00898 * 110.99806 * 85.52000 * 10 7 6 37 37 H 1.09001 * 109.47243 * 303.96496 * 11 10 7 38 38 H 1.09001 * 109.47409 * 63.95898 * 11 10 7 39 39 H 0.96990 * 119.99696 * 185.02012 * 16 15 13 40 40 H 1.09005 * 117.49456 * 0.02562 * 21 12 11 41 41 H 1.08991 * 117.50105 * 145.01665 * 21 12 11 42 42 H 1.09003 * 117.49608 * 252.51081 * 22 21 12 43 43 H 1.08989 * 117.51873 * 107.47549 * 22 21 12 44 44 H 0.96707 * 114.00493 * 87.34086 * 24 23 6 45 45 H 1.07994 * 120.02644 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.3300 2.5086 0.0001 6 6 4.2752 0.0072 -0.0005 7 6 5.7822 0.0115 -0.0017 8 1 6.1429 0.9782 0.3495 9 6 6.2918 -0.2375 -1.4226 10 7 6.2756 -1.0481 0.8882 11 6 7.5762 -0.6859 1.4673 12 6 8.1027 -1.8511 2.3073 13 6 7.5035 -1.9830 3.6838 14 1 7.3283 -2.9619 4.1050 15 6 7.1791 -0.8538 4.4055 16 7 7.7257 0.3023 4.0986 17 14 5.9629 -0.9662 5.8189 18 1 6.6934 -1.2589 7.0783 19 1 5.2406 0.3243 5.9541 20 1 4.9880 -2.0531 5.5480 21 6 9.5732 -2.2375 2.1366 22 6 8.4746 -3.1406 1.5723 23 6 3.5845 -1.1958 -0.0057 24 8 4.2657 -2.3717 -0.0114 25 6 2.1970 -1.1965 0.0005 26 1 -0.3634 0.0002 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6565 2.1325 0.0005 30 1 4.6105 2.7671 -1.0210 31 1 3.6937 3.2922 0.4115 32 1 5.2280 2.4122 0.6102 33 1 5.9310 -1.2042 -1.7739 34 1 5.9257 0.5487 -2.0830 35 1 7.3818 -0.2339 -1.4236 36 1 6.3289 -1.9315 0.4037 37 1 8.2823 -0.4672 0.6663 38 1 7.4600 0.1944 2.0995 39 1 7.5544 1.0814 4.6504 40 1 10.1657 -1.6611 1.4260 41 1 10.1077 -2.5868 3.0199 42 1 8.2863 -4.0841 2.0846 43 1 8.3438 -3.1587 0.4904 44 1 4.4988 -2.6956 0.8696 45 1 1.6570 -2.1317 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788799351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:44 Heat of formation + Delta-G solvation = 0.503922 kcal Electronic energy + Delta-G solvation = -24001.722824 eV Core-core repulsion = 20791.733288 eV Total energy + Delta-G solvation = -3209.989536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.98819 -37.24957 -36.53741 -35.34592 -32.92051 -32.11904 -30.44995 -29.24113 -27.02894 -26.43125 -25.63315 -24.08303 -22.22047 -21.36681 -20.90401 -19.82852 -18.91933 -17.23610 -16.58820 -15.92138 -15.45229 -14.79364 -14.63696 -14.29208 -13.80420 -13.75963 -13.48865 -13.32435 -13.14410 -13.10467 -12.78176 -12.52656 -12.40913 -12.04009 -11.87716 -11.60183 -11.32905 -11.20639 -11.01077 -10.97625 -10.87420 -10.80423 -10.52194 -10.42529 -10.16556 -9.74229 -9.19577 -9.15037 -8.67325 -8.29240 -8.07837 -7.95048 -7.40359 -6.02374 -3.96988 1.57273 1.57739 3.31158 3.40092 3.45587 3.81106 4.43106 4.65283 4.82688 4.92678 5.01958 5.14142 5.24719 5.42620 5.45747 5.53859 5.58069 5.61205 5.63959 5.70483 5.72432 5.81553 5.86129 5.99770 6.01652 6.15189 6.21454 6.31449 6.38297 6.43141 6.48188 6.62310 6.70231 6.71035 6.73253 6.77707 6.91494 7.00567 7.12155 7.15771 7.36703 7.68889 8.06877 8.10339 8.14834 8.35204 8.57860 8.94762 9.59162 11.01150 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.005883 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.725374 B = 4758.186443 C = 5409.631526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.081 4.081 3 C -0.135 4.135 4 C -0.067 4.067 5 C -0.117 4.117 6 C -0.087 4.087 7 C 0.124 3.876 8 H 0.084 0.916 9 C -0.171 4.171 10 N -0.668 5.668 11 C 0.088 3.912 12 C 0.065 3.935 13 C -0.480 4.480 14 H 0.057 0.943 15 C 0.081 3.919 16 N -0.874 5.874 17 Si 0.886 3.114 18 H -0.284 1.284 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.205 4.205 22 C -0.213 4.213 23 C 0.141 3.859 24 O -0.500 6.500 25 C -0.158 4.158 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.333 0.667 37 H -0.010 1.010 38 H 0.122 0.878 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.401 0.599 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 2.400 -9.498 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.068 4.068 5 C -0.173 4.173 6 C -0.088 4.088 7 C 0.014 3.986 8 H 0.102 0.898 9 C -0.230 4.230 10 N -0.301 5.301 11 C -0.040 4.040 12 C 0.064 3.936 13 C -0.517 4.517 14 H 0.076 0.924 15 C -0.122 4.122 16 N -0.511 5.511 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.244 4.244 22 C -0.251 4.251 23 C 0.096 3.904 24 O -0.313 6.313 25 C -0.176 4.176 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.154 0.846 37 H 0.008 0.992 38 H 0.140 0.860 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.261 0.739 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.223 2.864 -9.518 14.259 hybrid contribution 0.156 -0.325 0.498 0.615 sum -10.067 2.539 -9.019 13.753 Atomic orbital electron populations 1.20735 0.91464 1.02513 1.01899 1.19618 0.95632 0.92712 1.00155 1.20771 0.93297 0.97243 1.04036 1.19584 0.93400 0.94627 0.99148 1.20851 1.00591 0.93760 1.02130 1.20171 0.96115 0.91967 1.00592 1.20369 0.89635 0.97424 0.91188 0.89769 1.22418 1.00831 1.02002 0.97731 1.60531 1.30353 1.03851 1.35341 1.21872 0.85734 1.01941 0.94414 1.18925 0.90973 0.89252 0.94438 1.20361 1.40261 0.92344 0.98696 0.92438 1.24830 0.95151 0.95171 0.97032 1.69817 1.41849 1.00991 1.38490 0.86695 0.82249 0.77649 0.81989 1.21091 1.21191 1.19733 1.22985 0.94744 1.05355 1.01323 1.22825 1.08097 0.96786 0.97380 1.18133 0.89129 0.85241 0.97863 1.84607 1.75558 1.35961 1.35132 1.21191 0.93544 0.97936 1.04947 0.91533 0.91752 0.91758 0.86467 0.91422 0.91837 0.90589 0.92075 0.93000 0.92696 0.84627 0.99231 0.86005 0.92944 0.92109 0.90515 0.90760 0.91902 0.73933 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 2 C -0.08 -1.10 5.88 -104.65 -0.62 -1.71 16 3 C -0.14 -1.87 9.33 -39.56 -0.37 -2.24 16 4 C -0.07 -1.02 5.88 -104.64 -0.62 -1.63 16 5 C -0.12 -1.53 9.42 36.01 0.34 -1.19 16 6 C -0.09 -1.47 4.96 -104.47 -0.52 -1.99 16 7 C 0.12 2.16 2.41 -68.87 -0.17 2.00 16 8 H 0.08 1.53 5.37 -51.93 -0.28 1.25 16 9 C -0.17 -2.65 9.15 37.15 0.34 -2.31 16 10 N -0.67 -13.17 5.05 -107.96 -0.55 -13.72 16 11 C 0.09 2.00 5.14 -3.83 -0.02 1.98 16 12 C 0.06 1.56 1.92 -155.66 -0.30 1.26 16 13 C -0.48 -12.79 8.99 -34.44 -0.31 -13.10 16 14 H 0.06 1.55 7.89 -52.49 -0.41 1.13 16 15 C 0.08 2.17 5.08 -17.82 -0.09 2.08 16 16 N -0.87 -23.88 11.02 55.43 0.61 -23.27 16 17 Si 0.89 21.07 29.59 -169.99 -5.03 16.04 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 C -0.21 -4.69 9.88 -26.73 -0.26 -4.95 16 22 C -0.21 -4.55 9.46 -26.73 -0.25 -4.80 16 23 C 0.14 2.34 6.54 -39.22 -0.26 2.09 16 24 O -0.50 -8.13 11.03 -19.43 -0.21 -8.35 16 25 C -0.16 -2.34 9.64 -39.43 -0.38 -2.72 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 32 H 0.08 1.10 6.21 -51.93 -0.32 0.77 16 33 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 34 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.05 0.85 7.72 -51.93 -0.40 0.45 16 36 H 0.33 6.32 5.89 -39.29 -0.23 6.09 16 37 H -0.01 -0.23 7.52 -51.93 -0.39 -0.62 16 38 H 0.12 3.14 5.34 -51.93 -0.28 2.86 16 39 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 40 H 0.06 1.32 8.09 -51.93 -0.42 0.90 16 41 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.06 1.23 8.05 -51.93 -0.42 0.82 16 44 H 0.40 6.23 8.15 45.56 0.37 6.60 16 45 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -27.89 359.28 -9.43 -37.32 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -6.55 Total: 14.54 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -3.12 Total: -27.98 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.07 Total: -36.99 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.21 Total: -8.35 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.89 -9.43 -37.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788799351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.820 kcal (2) G-P(sol) polarization free energy of solvation -27.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds