Wall clock time and date at job start Tue Mar 31 2020 06:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47044 * 258.37915 * 3 2 1 5 5 C 1.50699 * 109.46952 * 294.26191 * 4 3 2 6 6 O 1.21284 * 119.99735 * 247.73988 * 5 4 3 7 7 N 1.34781 * 120.00587 * 67.74580 * 5 4 3 8 8 C 1.46498 * 120.00344 * 175.58137 * 7 5 4 9 9 C 1.53004 * 109.47081 * 84.55779 * 8 7 5 10 10 C 1.50700 * 115.54770 * 209.49177 * 9 8 7 11 11 H 1.07995 * 119.99845 * 119.70233 * 10 9 8 12 12 C 1.37877 * 120.00005 * 299.69525 * 10 9 8 13 13 N 1.31509 * 119.99843 * 173.95104 * 12 10 9 14 14 Si 1.86797 * 120.00048 * 353.95361 * 12 10 9 15 15 H 1.48499 * 109.47419 * 86.73481 * 14 12 10 16 16 H 1.48507 * 109.47093 * 206.73526 * 14 12 10 17 17 H 1.48498 * 109.47258 * 326.73167 * 14 12 10 18 18 C 1.52999 * 117.49711 * 63.82628 * 9 8 7 19 19 C 1.53003 * 60.03171 * 252.49939 * 18 9 8 20 20 C 1.53001 * 109.47016 * 54.25556 * 4 3 2 21 21 C 1.53004 * 109.47016 * 180.02562 * 20 4 3 22 22 C 1.52992 * 109.47184 * 300.00275 * 21 20 4 23 23 C 1.53001 * 109.47369 * 59.99941 * 22 21 20 24 24 C 1.52996 * 109.47248 * 300.00174 * 23 22 21 25 25 H 4.44649 * 5.63241 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46761 * 138.38286 * 3 2 1 27 27 H 1.08993 * 109.47277 * 18.37734 * 3 2 1 28 28 H 0.96997 * 119.99244 * 355.57911 * 7 5 4 29 29 H 1.09002 * 109.47100 * 324.56181 * 8 7 5 30 30 H 1.08996 * 109.47162 * 204.55781 * 8 7 5 31 31 H 0.97001 * 120.00109 * 185.02080 * 13 12 10 32 32 H 1.09001 * 117.49748 * 359.97438 * 18 9 8 33 33 H 1.08994 * 117.49981 * 144.99817 * 18 9 8 34 34 H 1.08996 * 117.50577 * 107.50386 * 19 18 9 35 35 H 1.09002 * 117.49415 * 252.52992 * 19 18 9 36 36 H 1.08995 * 109.47546 * 300.00066 * 20 4 3 37 37 H 1.09002 * 109.46664 * 60.00261 * 20 4 3 38 38 H 1.09002 * 109.46893 * 180.02562 * 21 20 4 39 39 H 1.09002 * 109.47192 * 60.00584 * 21 20 4 40 40 H 1.09002 * 109.47309 * 300.00237 * 22 21 20 41 41 H 1.09000 * 109.47512 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47629 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.46664 * 59.99901 * 23 22 21 44 44 H 1.09002 * 109.47065 * 299.99481 * 24 23 22 45 45 H 1.08999 * 109.47623 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.2915 1.4130 5 6 2.7722 1.6947 1.8065 6 8 3.6297 2.5406 1.9481 7 7 1.4763 2.0096 2.0013 8 6 1.1107 3.3460 2.4774 9 6 1.0229 4.3047 1.2882 10 6 1.3443 5.7457 1.5901 11 1 2.1650 6.2332 1.0849 12 6 0.5906 6.4419 2.5111 13 7 0.9420 7.6593 2.8628 14 14 -0.9298 5.6557 3.2593 15 1 -0.5397 4.8574 4.4491 16 1 -1.8860 6.7164 3.6667 17 1 -1.5724 4.7683 2.2569 18 6 -0.0503 4.0261 0.2340 19 6 1.4226 3.7640 -0.0869 20 6 2.5318 -0.7022 2.3949 21 6 3.0412 -0.4110 3.8080 22 6 4.5644 -0.5507 3.8399 23 6 5.1884 0.4429 2.8580 24 6 4.6791 0.1518 1.4450 25 1 -1.0500 -0.0002 -0.0001 26 1 3.0090 0.7691 -0.6825 27 1 3.0098 -0.9744 -0.3240 28 1 0.7857 1.3513 1.8262 29 1 1.8675 3.7023 3.1763 30 1 0.1446 3.3009 2.9799 31 1 0.4553 8.1214 3.5632 32 1 -0.6935 3.1596 0.3874 33 1 -0.5238 4.8850 -0.2413 34 1 1.7481 2.7254 -0.1445 35 1 1.9181 4.4509 -0.7730 36 1 1.4467 -0.6023 2.3725 37 1 2.8093 -1.7171 2.1102 38 1 2.5969 -1.1192 4.5074 39 1 2.7634 0.6040 4.0924 40 1 4.8422 -1.5656 3.5555 41 1 4.9273 -0.3437 4.8467 42 1 6.2737 0.3437 2.8810 43 1 4.9106 1.4579 3.1424 44 1 4.9570 -0.8631 1.1605 45 1 5.1233 0.8599 0.7455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797562752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:23 Heat of formation + Delta-G solvation = 27.421770 kcal Electronic energy + Delta-G solvation = -24810.753645 eV Core-core repulsion = 21601.931355 eV Total energy + Delta-G solvation = -3208.822290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.77428 -37.75746 -36.25788 -34.81876 -33.14922 -32.01998 -31.48071 -30.60094 -27.17632 -26.90028 -25.09275 -22.78978 -22.40066 -21.43255 -20.82050 -19.19859 -18.71735 -18.09400 -16.76614 -16.20957 -15.70754 -15.37293 -14.89998 -14.55985 -14.23238 -14.09369 -13.87327 -13.74388 -13.24070 -12.90772 -12.78545 -12.43195 -12.32379 -12.16072 -11.96277 -11.88800 -11.71191 -11.09379 -10.89730 -10.71117 -10.57317 -10.53934 -10.34431 -10.26607 -10.25267 -10.01065 -9.94368 -9.66278 -9.15580 -8.90601 -8.71658 -8.28484 -8.26335 -6.04561 -4.04131 2.69121 2.81888 3.19129 3.25833 3.35902 3.41251 3.70183 4.22457 4.43090 4.62816 4.67282 4.73132 4.94092 5.03881 5.17076 5.21914 5.34405 5.39062 5.43313 5.48698 5.51645 5.60597 5.68341 5.80633 5.88878 5.94972 5.95551 5.99197 5.99636 6.15933 6.19816 6.25136 6.27673 6.34169 6.46336 6.53029 6.61177 6.64446 6.88164 7.05922 7.25102 7.28146 7.55594 7.81687 8.06370 8.60018 8.81134 9.00046 9.56656 11.07028 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.006021 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.926728 B = 4649.606969 C = 5142.932356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.004 4.004 4 C -0.073 4.073 5 C 0.522 3.478 6 O -0.519 6.519 7 N -0.725 5.725 8 C 0.140 3.860 9 C -0.004 4.004 10 C -0.475 4.475 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.898 5.898 14 Si 0.869 3.131 15 H -0.278 1.278 16 H -0.292 1.292 17 H -0.254 1.254 18 C -0.200 4.200 19 C -0.170 4.170 20 C -0.105 4.105 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.091 4.091 25 H 0.217 0.783 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.390 0.610 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.264 0.736 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 -21.010 -1.609 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.180 4.180 3 C -0.040 4.040 4 C -0.077 4.077 5 C 0.307 3.693 6 O -0.394 6.394 7 N -0.376 5.376 8 C 0.017 3.983 9 C -0.006 4.006 10 C -0.513 4.513 11 H 0.094 0.906 12 C -0.126 4.126 13 N -0.536 5.536 14 Si 0.697 3.303 15 H -0.204 1.204 16 H -0.219 1.219 17 H -0.178 1.178 18 C -0.237 4.237 19 C -0.207 4.207 20 C -0.143 4.143 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.168 4.168 24 C -0.129 4.129 25 H 0.234 0.766 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.225 0.775 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.390 -20.184 -1.398 20.373 hybrid contribution -1.543 -0.566 0.308 1.672 sum 0.847 -20.750 -1.090 20.796 Atomic orbital electron populations 1.24881 0.95913 1.01021 1.00322 1.22864 0.94321 1.00391 1.00469 1.18813 0.85190 1.03664 0.96375 1.20929 0.97871 0.93979 0.94894 1.20101 0.82886 0.89037 0.77295 1.90705 1.48949 1.49856 1.49899 1.46276 1.07429 1.15736 1.68204 1.21465 0.99413 0.80227 0.97178 1.19760 0.98542 0.95472 0.86853 1.20335 1.15371 0.91385 1.24173 0.90589 1.24951 0.97101 0.94398 0.96153 1.69873 1.41312 1.12511 1.29908 0.87020 0.84047 0.79334 0.79889 1.20396 1.21867 1.17837 1.23045 0.91189 1.00943 1.08548 1.22680 0.97326 0.99502 1.01199 1.21621 0.99963 0.98311 0.94394 1.21588 0.96200 1.02225 0.96209 1.21531 0.95123 0.99293 0.99513 1.21715 0.99452 1.01574 0.94100 1.21337 0.91564 1.01378 0.98586 0.76644 0.88811 0.88632 0.77506 0.89539 0.92352 0.92576 0.91953 0.90031 0.90926 0.90603 0.91593 0.91038 0.91914 0.91605 0.92403 0.92221 0.92196 0.89254 0.91651 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 18.11 29.55 0.54 -1.74 16 2 C -0.18 -2.15 9.32 -37.12 -0.35 -2.50 16 3 C 0.00 -0.04 4.66 -29.52 -0.14 -0.18 16 4 C -0.07 -0.92 0.50 -155.66 -0.08 -0.99 16 5 C 0.52 8.93 3.15 -10.98 -0.03 8.90 16 6 O -0.52 -11.06 13.70 5.55 0.08 -10.99 16 7 N -0.72 -12.63 3.66 -60.29 -0.22 -12.86 16 8 C 0.14 3.03 4.95 -4.04 -0.02 3.01 16 9 C 0.00 -0.10 1.39 -155.62 -0.22 -0.32 16 10 C -0.47 -13.73 9.36 -34.44 -0.32 -14.06 16 11 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 12 C 0.08 2.20 5.46 -17.82 -0.10 2.11 16 13 N -0.90 -27.75 13.95 55.43 0.77 -26.98 16 14 Si 0.87 21.28 24.79 -169.99 -4.21 17.07 16 15 H -0.28 -6.56 7.08 56.52 0.40 -6.16 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.25 -5.85 6.21 56.52 0.35 -5.50 16 18 C -0.20 -4.31 8.63 -26.73 -0.23 -4.54 16 19 C -0.17 -3.70 9.28 -26.69 -0.25 -3.95 16 20 C -0.11 -1.13 4.23 -26.73 -0.11 -1.24 16 21 C -0.12 -1.42 5.70 -26.73 -0.15 -1.57 16 22 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 23 C -0.13 -1.65 5.63 -26.73 -0.15 -1.80 16 24 C -0.09 -1.07 4.35 -26.73 -0.12 -1.18 16 25 H 0.22 1.80 7.80 -54.09 -0.42 1.38 16 26 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.39 5.89 5.08 -40.82 -0.21 5.68 16 29 H 0.09 2.08 7.56 -51.93 -0.39 1.69 16 30 H 0.06 1.21 5.74 -51.93 -0.30 0.91 16 31 H 0.26 7.65 8.32 -40.82 -0.34 7.31 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.07 1.44 5.32 -51.93 -0.28 1.16 16 35 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 36 H 0.07 0.72 6.24 -51.93 -0.32 0.39 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.92 7.22 -51.93 -0.37 0.54 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.44 5.80 -51.93 -0.30 1.14 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.95 8.01 -51.93 -0.42 0.53 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -32.48 341.81 -7.59 -40.07 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -7.27 Total: 10.00 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -1.89 Total: -21.47 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.55 Total: -39.83 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.21 Total: 17.07 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.48 -7.59 -40.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.492 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds