Wall clock time and date at job start Tue Mar 31 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47044 * 258.37915 * 3 2 1 5 5 C 1.50699 * 109.46952 * 294.26191 * 4 3 2 6 6 O 1.21284 * 119.99735 * 247.73988 * 5 4 3 7 7 N 1.34781 * 120.00587 * 67.74580 * 5 4 3 8 8 C 1.46498 * 120.00344 * 175.58137 * 7 5 4 9 9 C 1.53004 * 109.47081 * 84.55779 * 8 7 5 10 10 C 1.50700 * 115.54770 * 209.49177 * 9 8 7 11 11 H 1.07995 * 119.99845 * 119.70233 * 10 9 8 12 12 C 1.37877 * 120.00005 * 299.69525 * 10 9 8 13 13 N 1.31509 * 119.99843 * 173.95104 * 12 10 9 14 14 Si 1.86797 * 120.00048 * 353.95361 * 12 10 9 15 15 H 1.48499 * 109.47419 * 86.73481 * 14 12 10 16 16 H 1.48507 * 109.47093 * 206.73526 * 14 12 10 17 17 H 1.48498 * 109.47258 * 326.73167 * 14 12 10 18 18 C 1.52999 * 117.49711 * 63.82628 * 9 8 7 19 19 C 1.53003 * 60.03171 * 252.49939 * 18 9 8 20 20 C 1.53001 * 109.47016 * 54.25556 * 4 3 2 21 21 C 1.53004 * 109.47016 * 180.02562 * 20 4 3 22 22 C 1.52992 * 109.47184 * 300.00275 * 21 20 4 23 23 C 1.53001 * 109.47369 * 59.99941 * 22 21 20 24 24 C 1.52996 * 109.47248 * 300.00174 * 23 22 21 25 25 H 4.44649 * 5.63241 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46761 * 138.38286 * 3 2 1 27 27 H 1.08993 * 109.47277 * 18.37734 * 3 2 1 28 28 H 0.96997 * 119.99244 * 355.57911 * 7 5 4 29 29 H 1.09002 * 109.47100 * 324.56181 * 8 7 5 30 30 H 1.08996 * 109.47162 * 204.55781 * 8 7 5 31 31 H 0.97001 * 120.00109 * 185.02080 * 13 12 10 32 32 H 1.09001 * 117.49748 * 359.97438 * 18 9 8 33 33 H 1.08994 * 117.49981 * 144.99817 * 18 9 8 34 34 H 1.08996 * 117.50577 * 107.50386 * 19 18 9 35 35 H 1.09002 * 117.49415 * 252.52992 * 19 18 9 36 36 H 1.08995 * 109.47546 * 300.00066 * 20 4 3 37 37 H 1.09002 * 109.46664 * 60.00261 * 20 4 3 38 38 H 1.09002 * 109.46893 * 180.02562 * 21 20 4 39 39 H 1.09002 * 109.47192 * 60.00584 * 21 20 4 40 40 H 1.09002 * 109.47309 * 300.00237 * 22 21 20 41 41 H 1.09000 * 109.47512 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47629 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.46664 * 59.99901 * 23 22 21 44 44 H 1.09002 * 109.47065 * 299.99481 * 24 23 22 45 45 H 1.08999 * 109.47623 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.2915 1.4130 5 6 2.7722 1.6947 1.8065 6 8 3.6297 2.5406 1.9481 7 7 1.4763 2.0096 2.0013 8 6 1.1107 3.3460 2.4774 9 6 1.0229 4.3047 1.2882 10 6 1.3443 5.7457 1.5901 11 1 2.1650 6.2332 1.0849 12 6 0.5906 6.4419 2.5111 13 7 0.9420 7.6593 2.8628 14 14 -0.9298 5.6557 3.2593 15 1 -0.5397 4.8574 4.4491 16 1 -1.8860 6.7164 3.6667 17 1 -1.5724 4.7683 2.2569 18 6 -0.0503 4.0261 0.2340 19 6 1.4226 3.7640 -0.0869 20 6 2.5318 -0.7022 2.3949 21 6 3.0412 -0.4110 3.8080 22 6 4.5644 -0.5507 3.8399 23 6 5.1884 0.4429 2.8580 24 6 4.6791 0.1518 1.4450 25 1 -1.0500 -0.0002 -0.0001 26 1 3.0090 0.7691 -0.6825 27 1 3.0098 -0.9744 -0.3240 28 1 0.7857 1.3513 1.8262 29 1 1.8675 3.7023 3.1763 30 1 0.1446 3.3009 2.9799 31 1 0.4553 8.1214 3.5632 32 1 -0.6935 3.1596 0.3874 33 1 -0.5238 4.8850 -0.2413 34 1 1.7481 2.7254 -0.1445 35 1 1.9181 4.4509 -0.7730 36 1 1.4467 -0.6023 2.3725 37 1 2.8093 -1.7171 2.1102 38 1 2.5969 -1.1192 4.5074 39 1 2.7634 0.6040 4.0924 40 1 4.8422 -1.5656 3.5555 41 1 4.9273 -0.3437 4.8467 42 1 6.2737 0.3437 2.8810 43 1 4.9106 1.4579 3.1424 44 1 4.9570 -0.8631 1.1605 45 1 5.1233 0.8599 0.7455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797562752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:22 Heat of formation + Delta-G solvation = 7.107819 kcal Electronic energy + Delta-G solvation = -24811.634524 eV Core-core repulsion = 21601.931355 eV Total energy + Delta-G solvation = -3209.703169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.97741 -39.24637 -37.77123 -35.83343 -34.65601 -34.14788 -32.36604 -31.54086 -28.98468 -27.76770 -27.04155 -23.82402 -23.51026 -23.21655 -21.87159 -20.79805 -20.36082 -18.91865 -18.58016 -17.57838 -17.18404 -16.79746 -16.15803 -16.06982 -15.40462 -15.26442 -15.09047 -14.85061 -14.68316 -14.56358 -14.15030 -13.97959 -13.65009 -13.27025 -13.09669 -12.92110 -12.84548 -12.79607 -12.65676 -12.21402 -12.13701 -11.94950 -11.66869 -11.55907 -11.40510 -11.11253 -10.97474 -10.89010 -10.81543 -10.78213 -10.45159 -10.20298 -9.89517 -8.30158 -6.36806 1.30245 1.37260 1.49411 1.72327 1.98781 2.02113 2.31912 2.37311 2.92923 3.32802 3.40721 3.68372 3.75559 3.85213 4.05368 4.14562 4.20766 4.25708 4.33750 4.37345 4.45662 4.53486 4.63819 4.64261 4.70833 4.74433 4.78114 4.81955 4.88801 4.95015 5.05746 5.09766 5.12784 5.20520 5.29115 5.30782 5.36995 5.38303 5.44778 5.48778 5.52479 5.65803 5.76027 6.28319 6.65840 6.72350 6.75816 7.28313 7.47604 8.85824 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.006021 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.926728 B = 4649.606969 C = 5142.932356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.210 4.210 3 C -0.003 4.003 4 C -0.064 4.064 5 C 0.517 3.483 6 O -0.570 6.570 7 N -0.715 5.715 8 C 0.152 3.848 9 C -0.030 4.030 10 C -0.491 4.491 11 H 0.014 0.986 12 C 0.016 3.984 13 N -0.952 5.952 14 Si 0.939 3.061 15 H -0.261 1.261 16 H -0.293 1.293 17 H -0.220 1.220 18 C -0.174 4.174 19 C -0.165 4.165 20 C -0.100 4.100 21 C -0.127 4.127 22 C -0.112 4.112 23 C -0.134 4.134 24 C -0.091 4.091 25 H 0.241 0.759 26 H 0.078 0.922 27 H 0.132 0.868 28 H 0.406 0.594 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.267 0.733 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.029 0.971 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.042 0.958 44 H 0.106 0.894 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 -25.938 -1.863 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.210 4.210 3 C -0.039 4.039 4 C -0.067 4.067 5 C 0.305 3.695 6 O -0.449 6.449 7 N -0.367 5.367 8 C 0.027 3.973 9 C -0.032 4.032 10 C -0.528 4.528 11 H 0.033 0.967 12 C -0.181 4.181 13 N -0.592 5.592 14 Si 0.762 3.238 15 H -0.186 1.186 16 H -0.220 1.220 17 H -0.143 1.143 18 C -0.211 4.211 19 C -0.202 4.202 20 C -0.138 4.138 21 C -0.164 4.164 22 C -0.150 4.150 23 C -0.171 4.171 24 C -0.128 4.128 25 H 0.258 0.742 26 H 0.096 0.904 27 H 0.150 0.850 28 H 0.244 0.756 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.124 0.876 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.067 -25.159 -1.682 25.216 hybrid contribution -0.667 1.065 0.339 1.302 sum -0.601 -24.095 -1.343 24.139 Atomic orbital electron populations 1.25588 0.96700 1.00022 0.99007 1.23132 0.94845 1.01383 1.01616 1.18849 0.85287 1.05142 0.94664 1.20943 0.98480 0.90757 0.96551 1.21105 0.81970 0.90769 0.75676 1.90703 1.50276 1.52068 1.51836 1.46114 1.08302 1.14294 1.68033 1.20985 0.99058 0.81812 0.95442 1.19638 1.01586 0.93244 0.88718 1.20486 1.13874 0.94342 1.24136 0.96744 1.25943 1.00811 0.94780 0.96565 1.70051 1.43409 1.14676 1.31068 0.85917 0.78919 0.78933 0.80063 1.18638 1.21951 1.14263 1.23053 0.90949 1.01830 1.05302 1.22664 0.98085 1.00098 0.99355 1.21658 0.99912 0.99206 0.92993 1.21613 0.96738 1.00661 0.97413 1.21516 0.94600 1.00065 0.98793 1.21682 1.00298 0.99658 0.95511 1.21388 0.90977 1.03069 0.97377 0.74242 0.90365 0.84980 0.75588 0.93341 0.90560 0.92404 0.87953 0.90948 0.88624 0.92762 0.91310 0.87609 0.89779 0.95243 0.89384 0.92533 0.91337 0.93949 0.87588 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.44 18.11 74.32 1.35 -2.09 16 2 C -0.21 -4.16 9.32 31.12 0.29 -3.87 16 3 C 0.00 -0.05 4.66 28.79 0.13 0.08 16 4 C -0.06 -1.45 0.50 -52.93 -0.03 -1.48 16 5 C 0.52 17.64 3.15 87.66 0.28 17.92 16 6 O -0.57 -25.73 13.70 -3.04 -0.04 -25.77 16 7 N -0.71 -23.95 3.66 -463.05 -1.70 -25.65 16 8 C 0.15 6.51 4.95 86.38 0.43 6.93 16 9 C -0.03 -1.45 1.39 -52.90 -0.07 -1.52 16 10 C -0.49 -30.04 9.36 25.60 0.24 -29.80 16 11 H 0.01 1.01 8.06 -2.91 -0.02 0.99 16 12 C 0.02 0.96 5.46 84.66 0.46 1.42 16 13 N -0.95 -61.95 13.95 21.45 0.30 -61.65 16 14 Si 0.94 43.76 24.79 68.60 1.70 45.46 16 15 H -0.26 -11.45 7.08 99.48 0.70 -10.75 16 16 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 17 H -0.22 -8.99 6.21 99.48 0.62 -8.37 16 18 C -0.17 -7.12 8.63 30.59 0.26 -6.85 16 19 C -0.16 -7.19 9.28 30.62 0.28 -6.90 16 20 C -0.10 -1.75 4.23 30.60 0.13 -1.62 16 21 C -0.13 -2.57 5.70 30.59 0.17 -2.39 16 22 C -0.11 -2.16 5.92 30.59 0.18 -1.97 16 23 C -0.13 -3.31 5.63 30.59 0.17 -3.14 16 24 C -0.09 -1.96 4.35 30.59 0.13 -1.82 16 25 H 0.24 2.68 7.80 -4.42 -0.03 2.64 16 26 H 0.08 1.73 8.10 -2.39 -0.02 1.72 16 27 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.41 10.95 5.08 -92.71 -0.47 10.48 16 29 H 0.05 2.43 7.56 -2.39 -0.02 2.41 16 30 H 0.08 2.96 5.74 -2.39 -0.01 2.95 16 31 H 0.27 16.14 8.32 -92.71 -0.77 15.37 16 32 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.10 3.70 5.32 -2.39 -0.01 3.69 16 35 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.07 1.19 6.24 -2.39 -0.01 1.18 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.03 0.80 7.22 -2.39 -0.02 0.78 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.04 1.46 5.80 -2.39 -0.01 1.44 16 44 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.05 1.36 8.01 -2.39 -0.02 1.34 16 Total: -1.00 -78.59 341.81 5.08 -73.50 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.41 Total: 31.22 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 4.41 Total: -37.12 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -1.40 Total: -87.29 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.04 Total: -25.77 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.70 Total: 45.46 kcal Total: -78.59 5.08 -73.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.612 kcal (2) G-P(sol) polarization free energy of solvation -78.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds