Wall clock time and date at job start Tue Mar 31 2020 06:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47474 * 2 1 4 4 C 1.50703 * 109.47388 * 179.97438 * 3 2 1 5 5 C 1.38279 * 119.93028 * 270.32519 * 4 3 2 6 6 C 1.38117 * 120.06853 * 180.27809 * 5 4 3 7 7 C 1.38870 * 119.92504 * 359.41825 * 6 5 4 8 8 N 1.39925 * 120.06695 * 180.29460 * 7 6 5 9 9 C 1.34783 * 119.99512 * 144.91470 * 8 7 6 10 10 O 1.21281 * 120.00115 * 4.62760 * 9 8 7 11 11 C 1.50700 * 119.99763 * 184.62501 * 9 8 7 12 12 C 1.52997 * 109.46987 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47230 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47230 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46987 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00202 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00043 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99568 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00130 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47158 * 89.99950 * 19 17 15 21 21 H 1.48493 * 109.47270 * 210.00236 * 19 17 15 22 22 H 1.48506 * 109.47000 * 330.00385 * 19 17 15 23 23 C 1.38869 * 119.86171 * 0.28685 * 7 6 5 24 24 C 1.38110 * 119.93013 * 359.97438 * 23 7 6 25 25 H 1.09009 * 109.46924 * 59.99805 * 1 2 3 26 26 H 1.08993 * 109.47068 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47311 * 300.00191 * 1 2 3 28 28 H 1.09007 * 109.47264 * 239.99809 * 2 1 3 29 29 H 1.09009 * 109.46924 * 120.00195 * 2 1 3 30 30 H 1.09007 * 109.46580 * 59.99953 * 3 2 1 31 31 H 1.08995 * 109.47337 * 300.00076 * 3 2 1 32 32 H 1.08001 * 119.96959 * 359.97438 * 5 4 3 33 33 H 1.08001 * 120.03481 * 179.69712 * 6 5 4 34 34 H 0.97003 * 120.00271 * 324.92730 * 8 7 6 35 35 H 1.08998 * 109.47392 * 300.00433 * 11 9 8 36 36 H 1.09006 * 109.46989 * 60.00289 * 11 9 8 37 37 H 1.09006 * 109.47069 * 299.99974 * 12 11 9 38 38 H 1.08992 * 109.47178 * 60.00288 * 12 11 9 39 39 H 1.09006 * 109.46735 * 299.99763 * 13 12 11 40 40 H 1.08998 * 109.47310 * 59.99430 * 13 12 11 41 41 H 1.08998 * 109.47179 * 299.99869 * 14 13 12 42 42 H 1.09000 * 109.46986 * 60.00118 * 14 13 12 43 43 H 0.97000 * 119.99373 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.03529 * 180.02562 * 23 7 6 45 45 H 1.07995 * 119.96463 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2365 1.4358 1.1993 6 6 5.6177 1.4416 1.2032 7 6 6.3139 1.4418 0.0017 8 7 7.7132 1.4414 0.0022 9 6 8.3872 0.7706 -0.9530 10 8 7.7839 0.2378 -1.8602 11 6 9.8904 0.6828 -0.8937 12 6 10.4014 -0.1268 -2.0872 13 6 11.9276 -0.2165 -2.0267 14 6 12.4386 -1.0256 -3.2205 15 6 13.9419 -1.1134 -3.1612 16 1 14.4790 -0.6399 -2.3527 17 6 14.6315 -1.7992 -4.1387 18 7 13.9773 -2.3762 -5.1229 19 14 16.4948 -1.9087 -4.0649 20 1 16.8896 -3.1128 -3.2907 21 1 17.0399 -2.0054 -5.4427 22 1 17.0361 -0.6948 -3.4024 23 6 5.6185 1.4423 -1.2004 24 6 4.2374 1.4420 -1.1975 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.6945 1.4311 2.1334 33 1 6.1556 1.4413 2.1398 34 1 8.1981 1.9237 0.6901 35 1 10.3147 1.6863 -0.9275 36 1 10.1895 0.1929 0.0330 37 1 9.9772 -1.1304 -2.0538 38 1 10.1024 0.3635 -3.0135 39 1 12.3521 0.7869 -2.0599 40 1 12.2263 -0.7070 -1.1003 41 1 12.0141 -2.0290 -3.1878 42 1 12.1399 -0.5346 -4.1467 43 1 14.4625 -2.8583 -5.8107 44 1 6.1572 1.4421 -2.1365 45 1 3.6961 1.4419 -2.1320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805152227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:25 Heat of formation + Delta-G solvation = -53.873659 kcal Electronic energy + Delta-G solvation = -21331.331940 eV Core-core repulsion = 18118.984415 eV Total energy + Delta-G solvation = -3212.347525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.64314 -38.93657 -35.94900 -34.89970 -34.18796 -32.64893 -31.09649 -30.69750 -29.49861 -26.62317 -25.34647 -23.25853 -22.80514 -22.01135 -20.99888 -20.23120 -20.00325 -17.86982 -16.94524 -16.16200 -16.01403 -15.85882 -15.44831 -14.63149 -14.58003 -14.38362 -14.07044 -13.92851 -13.74130 -13.49940 -13.11035 -12.64896 -12.61860 -12.33452 -12.21952 -11.73815 -11.63301 -11.58601 -11.37258 -11.28700 -10.99311 -10.94534 -10.56739 -10.50861 -10.43315 -10.29535 -9.81105 -9.62357 -9.24356 -9.06541 -8.99183 -8.30684 -8.16285 -5.95435 -3.98001 1.09253 1.26211 2.58149 2.96532 3.33964 3.40023 3.43127 3.62001 4.48519 4.49655 4.55479 4.69816 4.78352 4.82588 4.85438 5.12479 5.14542 5.22715 5.24456 5.30410 5.39957 5.40017 5.48650 5.50643 5.52321 5.70676 5.78247 5.82713 5.89448 5.97817 6.10230 6.14622 6.19903 6.27404 6.37601 6.47768 6.52349 6.81304 6.90821 6.99306 7.18245 7.27983 7.73665 7.89307 8.05649 8.09459 8.47467 9.09657 9.65638 11.15868 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.038799 B = 0.002020 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.499245 B =13859.264961 C =14328.257076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.077 4.077 4 C -0.103 4.103 5 C -0.100 4.100 6 C -0.146 4.146 7 C 0.145 3.855 8 N -0.682 5.682 9 C 0.511 3.489 10 O -0.515 6.515 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.119 4.119 24 C -0.099 4.099 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.410 0.590 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.140 0.860 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.133 10.387 14.933 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.114 4.114 4 C -0.104 4.104 5 C -0.119 4.119 6 C -0.167 4.167 7 C 0.050 3.950 8 N -0.328 5.328 9 C 0.300 3.700 10 O -0.389 6.389 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.139 4.139 24 C -0.117 4.117 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.246 0.754 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.158 0.842 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.457 9.865 14.090 29.899 hybrid contribution 1.360 0.089 0.393 1.419 sum -23.096 9.954 14.482 29.022 Atomic orbital electron populations 1.21790 0.95764 1.01715 1.01741 1.21534 0.95541 0.96197 1.02561 1.20592 0.90880 0.97289 1.02682 1.19859 0.95647 1.01736 0.93143 1.20763 0.93245 1.00340 0.97553 1.20883 0.94529 1.04821 0.96435 1.17820 0.82876 1.00235 0.94025 1.43730 1.04561 1.52647 1.31830 1.21341 0.91127 0.76688 0.80807 1.90703 1.70168 1.44744 1.33261 1.21823 0.89247 1.03617 1.03019 1.21473 0.97456 0.99647 0.95630 1.21652 0.91738 1.00441 1.00968 1.19098 0.95426 0.94963 0.92282 1.21284 0.92277 1.33198 1.09175 0.92744 1.25047 0.98363 0.95659 0.95523 1.69976 1.35418 1.35205 1.12818 0.86603 0.85876 0.78365 0.77189 1.20714 1.21252 1.19928 1.21348 0.94143 1.00285 0.98112 1.20951 0.93600 0.99573 0.97619 0.92713 0.92688 0.92788 0.91739 0.91885 0.91217 0.91126 0.85971 0.85834 0.75439 0.88779 0.88761 0.91701 0.91689 0.93414 0.93422 0.96575 0.96561 0.93042 0.84224 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 3 C -0.08 -0.54 5.34 -27.88 -0.15 -0.69 16 4 C -0.10 -0.95 5.14 -104.59 -0.54 -1.49 16 5 C -0.10 -0.89 9.69 -39.61 -0.38 -1.27 16 6 C -0.15 -1.38 9.97 -39.39 -0.39 -1.78 16 7 C 0.14 1.67 6.30 -83.70 -0.53 1.15 16 8 N -0.68 -7.21 5.34 -9.86 -0.05 -7.26 16 9 C 0.51 7.00 7.67 -10.98 -0.08 6.92 16 10 O -0.51 -9.09 13.42 5.56 0.07 -9.01 16 11 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 12 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 13 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 14 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 15 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -27.54 13.29 55.43 0.74 -26.80 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.12 -1.51 8.70 -39.39 -0.34 -1.85 16 24 C -0.10 -1.06 9.69 -39.61 -0.38 -1.44 16 25 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.41 2.87 8.82 -40.82 -0.36 2.51 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.14 2.02 6.22 -52.49 -0.33 1.69 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -33.66 373.33 -10.02 -43.69 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.83 Total: -1.50 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -3.56 Total: -21.64 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.68 Total: -34.06 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.66 -10.02 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805152227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.188 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds