Wall clock time and date at job start Tue Mar 31 2020 06:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47474 * 2 1 4 4 C 1.50703 * 109.47388 * 179.97438 * 3 2 1 5 5 C 1.38279 * 119.93028 * 270.32519 * 4 3 2 6 6 C 1.38117 * 120.06853 * 180.27809 * 5 4 3 7 7 C 1.38870 * 119.92504 * 359.41825 * 6 5 4 8 8 N 1.39925 * 120.06695 * 180.29460 * 7 6 5 9 9 C 1.34783 * 119.99512 * 144.91470 * 8 7 6 10 10 O 1.21281 * 120.00115 * 4.62760 * 9 8 7 11 11 C 1.50700 * 119.99763 * 184.62501 * 9 8 7 12 12 C 1.52997 * 109.46987 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47230 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47230 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46987 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00202 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00043 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99568 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00130 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47158 * 89.99950 * 19 17 15 21 21 H 1.48493 * 109.47270 * 210.00236 * 19 17 15 22 22 H 1.48506 * 109.47000 * 330.00385 * 19 17 15 23 23 C 1.38869 * 119.86171 * 0.28685 * 7 6 5 24 24 C 1.38110 * 119.93013 * 359.97438 * 23 7 6 25 25 H 1.09009 * 109.46924 * 59.99805 * 1 2 3 26 26 H 1.08993 * 109.47068 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47311 * 300.00191 * 1 2 3 28 28 H 1.09007 * 109.47264 * 239.99809 * 2 1 3 29 29 H 1.09009 * 109.46924 * 120.00195 * 2 1 3 30 30 H 1.09007 * 109.46580 * 59.99953 * 3 2 1 31 31 H 1.08995 * 109.47337 * 300.00076 * 3 2 1 32 32 H 1.08001 * 119.96959 * 359.97438 * 5 4 3 33 33 H 1.08001 * 120.03481 * 179.69712 * 6 5 4 34 34 H 0.97003 * 120.00271 * 324.92730 * 8 7 6 35 35 H 1.08998 * 109.47392 * 300.00433 * 11 9 8 36 36 H 1.09006 * 109.46989 * 60.00289 * 11 9 8 37 37 H 1.09006 * 109.47069 * 299.99974 * 12 11 9 38 38 H 1.08992 * 109.47178 * 60.00288 * 12 11 9 39 39 H 1.09006 * 109.46735 * 299.99763 * 13 12 11 40 40 H 1.08998 * 109.47310 * 59.99430 * 13 12 11 41 41 H 1.08998 * 109.47179 * 299.99869 * 14 13 12 42 42 H 1.09000 * 109.46986 * 60.00118 * 14 13 12 43 43 H 0.97000 * 119.99373 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.03529 * 180.02562 * 23 7 6 45 45 H 1.07995 * 119.96463 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2365 1.4358 1.1993 6 6 5.6177 1.4416 1.2032 7 6 6.3139 1.4418 0.0017 8 7 7.7132 1.4414 0.0022 9 6 8.3872 0.7706 -0.9530 10 8 7.7839 0.2378 -1.8602 11 6 9.8904 0.6828 -0.8937 12 6 10.4014 -0.1268 -2.0872 13 6 11.9276 -0.2165 -2.0267 14 6 12.4386 -1.0256 -3.2205 15 6 13.9419 -1.1134 -3.1612 16 1 14.4790 -0.6399 -2.3527 17 6 14.6315 -1.7992 -4.1387 18 7 13.9773 -2.3762 -5.1229 19 14 16.4948 -1.9087 -4.0649 20 1 16.8896 -3.1128 -3.2907 21 1 17.0399 -2.0054 -5.4427 22 1 17.0361 -0.6948 -3.4024 23 6 5.6185 1.4423 -1.2004 24 6 4.2374 1.4420 -1.1975 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.6945 1.4311 2.1334 33 1 6.1556 1.4413 2.1398 34 1 8.1981 1.9237 0.6901 35 1 10.3147 1.6863 -0.9275 36 1 10.1895 0.1929 0.0330 37 1 9.9772 -1.1304 -2.0538 38 1 10.1024 0.3635 -3.0135 39 1 12.3521 0.7869 -2.0599 40 1 12.2263 -0.7070 -1.1003 41 1 12.0141 -2.0290 -3.1878 42 1 12.1399 -0.5346 -4.1467 43 1 14.4625 -2.8583 -5.8107 44 1 6.1572 1.4421 -2.1365 45 1 3.6961 1.4419 -2.1320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805152227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:24 Heat of formation + Delta-G solvation = -72.464467 kcal Electronic energy + Delta-G solvation = -21332.138098 eV Core-core repulsion = 18118.984415 eV Total energy + Delta-G solvation = -3213.153683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59075 -39.82006 -36.90931 -36.43304 -34.97344 -34.60518 -31.92710 -31.84081 -30.76471 -27.85937 -26.62500 -24.45783 -23.88296 -22.92917 -21.91483 -21.56717 -21.21703 -18.76939 -18.40383 -17.93819 -17.06639 -16.59720 -16.50764 -16.28608 -15.63687 -15.43916 -15.11129 -14.80382 -14.54342 -14.44969 -14.31145 -13.94520 -13.66529 -13.59928 -13.29169 -13.26443 -12.86071 -12.82409 -12.34762 -12.22592 -12.17347 -12.15670 -12.03084 -11.94083 -11.49668 -11.39146 -11.35380 -11.19072 -11.09368 -10.74353 -10.55374 -9.86240 -8.98697 -8.19079 -6.31316 0.28111 0.46961 1.40225 1.42540 1.53610 1.56877 2.06322 2.41787 2.83372 3.13669 3.70014 3.88409 3.93148 4.00770 4.10456 4.13122 4.19601 4.27704 4.47772 4.52363 4.54756 4.61498 4.67104 4.73068 4.82067 4.83996 4.87093 4.92503 5.03026 5.11185 5.17487 5.21694 5.28671 5.32248 5.36176 5.38999 5.42014 5.47035 5.55053 5.58247 5.74020 5.77602 5.87752 6.10776 6.24799 6.43577 6.87312 7.14723 7.38352 8.93138 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.038799 B = 0.002020 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.499245 B =13859.264961 C =14328.257076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.074 4.074 4 C -0.102 4.102 5 C -0.100 4.100 6 C -0.140 4.140 7 C 0.122 3.878 8 N -0.663 5.663 9 C 0.510 3.490 10 O -0.566 6.566 11 C -0.124 4.124 12 C -0.097 4.097 13 C -0.096 4.096 14 C 0.017 3.983 15 C -0.542 4.542 16 H 0.067 0.933 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.146 4.146 24 C -0.112 4.112 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.429 0.571 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.062 0.938 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.263 0.737 44 H 0.110 0.890 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.995 11.701 18.205 32.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.111 4.111 4 C -0.103 4.103 5 C -0.119 4.119 6 C -0.160 4.160 7 C 0.028 3.972 8 N -0.310 5.310 9 C 0.300 3.700 10 O -0.444 6.444 11 C -0.164 4.164 12 C -0.135 4.135 13 C -0.133 4.133 14 C -0.020 4.020 15 C -0.580 4.580 16 H 0.085 0.915 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.794 3.206 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.166 4.166 24 C -0.131 4.131 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.269 0.731 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.071 0.929 44 H 0.129 0.871 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.325 11.218 17.417 31.951 hybrid contribution 1.212 -0.326 -0.637 1.407 sum -23.113 10.892 16.780 30.568 Atomic orbital electron populations 1.21770 0.94662 1.01980 1.02362 1.21512 0.96493 0.95979 1.01776 1.20625 0.89220 0.97481 1.03779 1.20156 0.96945 1.00409 0.92743 1.21175 0.93269 0.98949 0.98483 1.21196 0.94962 1.03273 0.96529 1.18012 0.83174 1.01537 0.94473 1.43471 1.04448 1.51719 1.31320 1.21487 0.91529 0.76374 0.80646 1.90702 1.71094 1.47153 1.35409 1.21690 0.88508 1.04594 1.01589 1.21258 0.95574 0.99318 0.97362 1.21447 0.93364 1.00039 0.98462 1.19068 0.95075 0.94013 0.93825 1.21768 0.93406 1.33256 1.09599 0.91489 1.26108 1.04310 0.95082 0.94975 1.70136 1.37833 1.36092 1.13759 0.85369 0.78706 0.79086 0.77402 1.19722 1.20977 1.18273 1.21285 0.95118 1.02426 0.97763 1.21084 0.93060 1.00096 0.98823 0.92514 0.92650 0.91741 0.93278 0.91973 0.89384 0.90779 0.83010 0.82973 0.73149 0.85751 0.85791 0.93890 0.93773 0.91913 0.91930 0.99761 0.99713 0.92876 0.87147 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 3 C -0.07 -0.90 5.34 29.85 0.16 -0.74 16 4 C -0.10 -1.75 5.14 -19.84 -0.10 -1.85 16 5 C -0.10 -1.51 9.69 22.25 0.22 -1.29 16 6 C -0.14 -2.29 9.97 22.39 0.22 -2.07 16 7 C 0.12 2.74 6.30 38.15 0.24 2.98 16 8 N -0.66 -13.14 5.34 -303.50 -1.62 -14.76 16 9 C 0.51 13.85 7.67 87.66 0.67 14.52 16 10 O -0.57 -21.09 13.42 -3.03 -0.04 -21.13 16 11 C -0.12 -2.94 5.70 29.85 0.17 -2.77 16 12 C -0.10 -3.46 4.50 30.59 0.14 -3.32 16 13 C -0.10 -3.87 5.15 30.59 0.16 -3.71 16 14 C 0.02 0.95 4.97 29.85 0.15 1.10 16 15 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 17 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 18 N -0.94 -59.31 13.29 21.45 0.28 -59.03 16 19 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 C -0.15 -3.88 8.70 22.39 0.19 -3.68 16 24 C -0.11 -2.46 9.69 22.25 0.22 -2.25 16 25 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.09 0.78 8.09 -2.38 -0.02 0.76 16 31 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 32 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 33 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.43 4.81 8.82 -92.71 -0.82 3.99 16 35 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 38 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 39 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 43 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.11 3.54 6.22 -2.91 -0.02 3.52 16 45 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -76.94 373.33 4.80 -72.13 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.13 Total: 12.32 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.02 Total: -36.48 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -1.33 Total: -73.78 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.04 Total: -21.13 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.94 4.80 -72.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805152227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.334 kcal (2) G-P(sol) polarization free energy of solvation -76.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds