Wall clock time and date at job start Tue Mar 31 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.47118 * 2 1 4 4 C 1.38231 * 119.99778 * 89.99954 * 3 2 1 5 5 C 1.38234 * 119.99676 * 179.72528 * 4 3 2 6 6 C 1.38236 * 119.99940 * 0.27599 * 5 4 3 7 7 C 1.50701 * 120.00160 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47298 * 84.59688 * 7 6 5 9 9 C 1.46903 * 111.00056 * 75.53627 * 8 7 6 10 10 C 1.52995 * 109.47420 * 190.00330 * 9 8 7 11 11 H 1.09000 * 109.47355 * 59.99948 * 10 9 8 12 12 O 1.42905 * 109.47140 * 299.99965 * 10 9 8 13 13 C 1.50703 * 109.47117 * 180.02562 * 10 9 8 14 14 H 1.07999 * 119.99748 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99675 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00395 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 119.99679 * 180.02562 * 15 13 10 18 18 H 1.48491 * 109.47268 * 89.99902 * 17 15 13 19 19 H 1.48500 * 109.47085 * 210.00214 * 17 15 13 20 20 H 1.48507 * 109.46974 * 330.00233 * 17 15 13 21 21 C 1.46899 * 111.00427 * 199.49345 * 8 7 6 22 22 C 1.53000 * 117.49953 * 123.97567 * 21 8 7 23 23 C 1.52996 * 117.50017 * 55.35234 * 21 8 7 24 24 C 1.38234 * 120.00140 * 359.97438 * 6 5 4 25 25 C 1.38230 * 119.99673 * 270.18694 * 3 2 1 26 26 H 1.08999 * 109.47344 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47107 * 300.00562 * 1 2 3 28 28 H 1.09006 * 109.47123 * 59.99854 * 1 2 3 29 29 H 1.08995 * 109.47148 * 239.99814 * 2 1 3 30 30 H 1.09003 * 109.47077 * 119.99611 * 2 1 3 31 31 H 1.07995 * 120.00445 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.99920 * 180.25287 * 5 4 3 33 33 H 1.08997 * 109.47338 * 204.60244 * 7 6 5 34 34 H 1.09003 * 109.46962 * 324.60223 * 7 6 5 35 35 H 1.09007 * 109.46953 * 310.00672 * 9 8 7 36 36 H 1.09000 * 109.46899 * 69.99999 * 9 8 7 37 37 H 0.96697 * 113.99522 * 300.00486 * 12 10 9 38 38 H 0.97002 * 119.99777 * 180.02562 * 16 15 13 39 39 H 1.09001 * 115.54616 * 269.68780 * 21 8 7 40 40 H 1.08996 * 117.49923 * 0.02562 * 22 21 8 41 41 H 1.09000 * 117.49435 * 145.02367 * 22 21 8 42 42 H 1.09000 * 117.50499 * 214.98484 * 23 21 8 43 43 H 1.08999 * 117.49994 * 359.97438 * 23 21 8 44 44 H 1.08004 * 120.00153 * 179.97438 * 24 6 5 45 45 H 1.08000 * 120.00680 * 0.04556 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7289 3.3738 1.1971 6 6 2.9593 4.0255 0.0000 7 6 3.4670 5.4444 -0.0001 8 7 4.9304 5.4409 0.1272 9 6 5.5682 5.0560 -1.1389 10 6 7.0620 4.8211 -0.9069 11 1 7.1952 4.0236 -0.1759 12 8 7.6626 6.0216 -0.4167 13 6 7.7163 4.4269 -2.2060 14 1 7.1256 4.3511 -3.1069 15 6 9.0690 4.1631 -2.2443 16 7 9.7883 4.2549 -1.1471 17 14 9.8802 3.6751 -3.8547 18 1 10.3501 4.8937 -4.5614 19 1 11.0373 2.7868 -3.5769 20 1 8.8979 2.9570 -4.7061 21 6 5.4219 6.7460 0.5889 22 6 6.2764 6.7705 1.8578 23 6 4.8410 7.2991 1.8917 24 6 2.7240 3.3756 -1.1972 25 6 2.2590 2.0737 -1.1971 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0823 1.5636 2.1324 32 1 2.9128 3.8816 2.1325 33 1 3.1846 5.9313 -0.9335 34 1 3.0306 5.9864 0.8389 35 1 5.1101 4.1403 -1.5129 36 1 5.4350 5.8536 -1.8699 37 1 7.5821 6.7752 -1.0173 38 1 10.7401 4.0696 -1.1742 39 1 5.6661 7.4610 -0.1968 40 1 6.4743 5.8183 2.3498 41 1 7.0832 7.5018 1.9071 42 1 4.7034 8.3780 1.9635 43 1 4.0938 6.6948 2.4062 44 1 2.9036 3.8849 -2.1325 45 1 2.0755 1.5660 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809572684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:00 Heat of formation + Delta-G solvation = -3.696029 kcal Electronic energy + Delta-G solvation = -23284.464124 eV Core-core repulsion = 20074.292464 eV Total energy + Delta-G solvation = -3210.171659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.50594 -38.03680 -35.28304 -34.76212 -32.95490 -32.03524 -30.71990 -29.93768 -28.00318 -25.69476 -24.11636 -22.66108 -22.51497 -21.66036 -20.84920 -20.32990 -19.60622 -16.86442 -16.01373 -15.83409 -15.39607 -15.05004 -14.82171 -14.52311 -14.20161 -13.85753 -13.71988 -13.62432 -13.19453 -13.15430 -12.75307 -12.68048 -12.29713 -11.98123 -11.62438 -11.51515 -11.22361 -11.03482 -10.99649 -10.89892 -10.79779 -10.70027 -10.68434 -10.48111 -10.08621 -9.74102 -9.62789 -8.91532 -8.66561 -8.52446 -8.34591 -8.01839 -7.54180 -5.95148 -4.12942 1.53787 1.64817 3.29434 3.36677 3.39250 3.88090 4.37966 4.42121 4.58387 4.79101 4.87689 5.12126 5.19000 5.20150 5.30488 5.31511 5.46539 5.48971 5.50073 5.55063 5.67811 5.74715 5.80416 5.81620 5.89834 5.96347 6.02094 6.06879 6.13490 6.27401 6.29912 6.34230 6.36724 6.54697 6.63171 6.65089 6.78741 6.80723 6.89605 6.94018 7.23231 7.63727 7.71396 7.82021 8.02883 8.27758 8.90462 9.47172 9.65178 11.08682 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.004890 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.247684 B = 5724.547852 C = 7392.191991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.121 4.121 5 C -0.095 4.095 6 C -0.069 4.069 7 C 0.090 3.910 8 N -0.501 5.501 9 C 0.034 3.966 10 C 0.240 3.760 11 H 0.059 0.941 12 O -0.552 6.552 13 C -0.572 4.572 14 H 0.052 0.948 15 C 0.082 3.918 16 N -0.857 5.857 17 Si 0.886 3.114 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.041 3.959 22 C -0.124 4.124 23 C -0.206 4.206 24 C -0.108 4.108 25 C -0.118 4.118 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.020 0.980 37 H 0.334 0.666 38 H 0.259 0.741 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.117 0.883 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.765 -1.202 3.857 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.139 4.139 5 C -0.114 4.114 6 C -0.069 4.069 7 C -0.038 4.038 8 N -0.225 5.225 9 C -0.093 4.093 10 C 0.182 3.818 11 H 0.077 0.923 12 O -0.353 6.353 13 C -0.611 4.611 14 H 0.070 0.930 15 C -0.124 4.124 16 N -0.493 5.493 17 Si 0.713 3.287 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.068 4.068 22 C -0.162 4.162 23 C -0.244 4.244 24 C -0.126 4.126 25 C -0.136 4.136 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.177 0.823 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.135 0.865 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.316 -1.971 4.811 17.124 hybrid contribution 0.271 0.543 -2.156 2.240 sum -16.044 -1.428 2.655 16.325 Atomic orbital electron populations 1.21742 0.95055 1.01345 1.02083 1.20516 0.95846 0.93069 1.02710 1.19798 0.99947 0.95911 0.93308 1.20937 1.00780 0.94996 0.97209 1.20923 0.98253 0.94549 0.97638 1.19786 0.97840 0.96292 0.93027 1.21052 0.89776 0.92357 1.00577 1.61859 1.02506 1.26388 1.31725 1.23120 1.00051 0.98883 0.87289 1.19268 0.83372 0.84812 0.94306 0.92276 1.86661 1.81635 1.20224 1.46777 1.21646 0.93996 1.49967 0.95449 0.92983 1.24989 0.97450 0.94157 0.95853 1.70085 1.06517 1.46054 1.26601 0.86732 0.79164 0.78511 0.84290 1.20650 1.21145 1.19924 1.22107 1.03230 0.90888 0.90564 1.22701 0.91423 1.01971 1.00126 1.23224 0.98962 0.99686 1.02511 1.21049 0.99017 0.94909 0.97636 1.20923 1.00536 0.94863 0.97310 0.92687 0.92673 0.92669 0.91188 0.91225 0.86590 0.86335 0.94645 0.90456 0.91176 0.96211 0.82295 0.93125 0.90104 0.88865 0.89356 0.89756 0.89380 0.86454 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.08 -0.85 6.06 -27.88 -0.17 -1.02 16 3 C -0.09 -1.15 5.13 -104.62 -0.54 -1.68 16 4 C -0.12 -1.59 9.70 -39.59 -0.38 -1.97 16 5 C -0.10 -1.36 9.72 -39.58 -0.38 -1.74 16 6 C -0.07 -1.05 5.03 -104.62 -0.53 -1.57 16 7 C 0.09 1.37 5.07 -4.98 -0.03 1.34 16 8 N -0.50 -9.09 4.58 -228.08 -1.04 -10.14 16 9 C 0.03 0.71 4.56 -3.82 -0.02 0.69 16 10 C 0.24 6.09 3.06 -27.88 -0.09 6.01 16 11 H 0.06 1.73 8.14 -51.93 -0.42 1.30 16 12 O -0.55 -13.63 9.27 -35.23 -0.33 -13.96 16 13 C -0.57 -15.79 8.76 -34.44 -0.30 -16.09 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 15 C 0.08 2.30 5.40 -17.82 -0.10 2.20 16 16 N -0.86 -25.47 12.84 55.43 0.71 -24.75 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.04 0.69 3.47 -67.72 -0.23 0.46 16 22 C -0.12 -2.12 9.13 -26.73 -0.24 -2.37 16 23 C -0.21 -2.93 9.51 -26.73 -0.25 -3.19 16 24 C -0.11 -1.59 8.39 -39.58 -0.33 -1.92 16 25 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 33 H 0.04 0.53 7.91 -51.93 -0.41 0.12 16 34 H 0.08 1.07 6.31 -51.93 -0.33 0.74 16 35 H 0.07 1.49 6.30 -51.92 -0.33 1.16 16 36 H 0.02 0.41 8.07 -51.93 -0.42 -0.01 16 37 H 0.33 7.60 8.52 45.56 0.39 7.98 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.08 1.41 7.45 -51.93 -0.39 1.02 16 40 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.20 7.30 -51.93 -0.38 0.82 16 44 H 0.12 1.66 7.98 -52.48 -0.42 1.24 16 45 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -29.99 363.38 -10.70 -40.69 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.89 Total: 10.08 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -3.61 Total: -23.74 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.33 Total: -34.89 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.33 Total: -13.96 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.99 -10.70 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.996 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds