Wall clock time and date at job start Tue Mar 31 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.47118 * 2 1 4 4 C 1.38231 * 119.99778 * 89.99954 * 3 2 1 5 5 C 1.38234 * 119.99676 * 179.72528 * 4 3 2 6 6 C 1.38236 * 119.99940 * 0.27599 * 5 4 3 7 7 C 1.50701 * 120.00160 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47298 * 84.59688 * 7 6 5 9 9 C 1.46903 * 111.00056 * 75.53627 * 8 7 6 10 10 C 1.52995 * 109.47420 * 190.00330 * 9 8 7 11 11 H 1.09000 * 109.47355 * 59.99948 * 10 9 8 12 12 O 1.42905 * 109.47140 * 299.99965 * 10 9 8 13 13 C 1.50703 * 109.47117 * 180.02562 * 10 9 8 14 14 H 1.07999 * 119.99748 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99675 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00395 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 119.99679 * 180.02562 * 15 13 10 18 18 H 1.48491 * 109.47268 * 89.99902 * 17 15 13 19 19 H 1.48500 * 109.47085 * 210.00214 * 17 15 13 20 20 H 1.48507 * 109.46974 * 330.00233 * 17 15 13 21 21 C 1.46899 * 111.00427 * 199.49345 * 8 7 6 22 22 C 1.53000 * 117.49953 * 123.97567 * 21 8 7 23 23 C 1.52996 * 117.50017 * 55.35234 * 21 8 7 24 24 C 1.38234 * 120.00140 * 359.97438 * 6 5 4 25 25 C 1.38230 * 119.99673 * 270.18694 * 3 2 1 26 26 H 1.08999 * 109.47344 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47107 * 300.00562 * 1 2 3 28 28 H 1.09006 * 109.47123 * 59.99854 * 1 2 3 29 29 H 1.08995 * 109.47148 * 239.99814 * 2 1 3 30 30 H 1.09003 * 109.47077 * 119.99611 * 2 1 3 31 31 H 1.07995 * 120.00445 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.99920 * 180.25287 * 5 4 3 33 33 H 1.08997 * 109.47338 * 204.60244 * 7 6 5 34 34 H 1.09003 * 109.46962 * 324.60223 * 7 6 5 35 35 H 1.09007 * 109.46953 * 310.00672 * 9 8 7 36 36 H 1.09000 * 109.46899 * 69.99999 * 9 8 7 37 37 H 0.96697 * 113.99522 * 300.00486 * 12 10 9 38 38 H 0.97002 * 119.99777 * 180.02562 * 16 15 13 39 39 H 1.09001 * 115.54616 * 269.68780 * 21 8 7 40 40 H 1.08996 * 117.49923 * 0.02562 * 22 21 8 41 41 H 1.09000 * 117.49435 * 145.02367 * 22 21 8 42 42 H 1.09000 * 117.50499 * 214.98484 * 23 21 8 43 43 H 1.08999 * 117.49994 * 359.97438 * 23 21 8 44 44 H 1.08004 * 120.00153 * 179.97438 * 24 6 5 45 45 H 1.08000 * 120.00680 * 0.04556 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7289 3.3738 1.1971 6 6 2.9593 4.0255 0.0000 7 6 3.4670 5.4444 -0.0001 8 7 4.9304 5.4409 0.1272 9 6 5.5682 5.0560 -1.1389 10 6 7.0620 4.8211 -0.9069 11 1 7.1952 4.0236 -0.1759 12 8 7.6626 6.0216 -0.4167 13 6 7.7163 4.4269 -2.2060 14 1 7.1256 4.3511 -3.1069 15 6 9.0690 4.1631 -2.2443 16 7 9.7883 4.2549 -1.1471 17 14 9.8802 3.6751 -3.8547 18 1 10.3501 4.8937 -4.5614 19 1 11.0373 2.7868 -3.5769 20 1 8.8979 2.9570 -4.7061 21 6 5.4219 6.7460 0.5889 22 6 6.2764 6.7705 1.8578 23 6 4.8410 7.2991 1.8917 24 6 2.7240 3.3756 -1.1972 25 6 2.2590 2.0737 -1.1971 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0823 1.5636 2.1324 32 1 2.9128 3.8816 2.1325 33 1 3.1846 5.9313 -0.9335 34 1 3.0306 5.9864 0.8389 35 1 5.1101 4.1403 -1.5129 36 1 5.4350 5.8536 -1.8699 37 1 7.5821 6.7752 -1.0173 38 1 10.7401 4.0696 -1.1742 39 1 5.6661 7.4610 -0.1968 40 1 6.4743 5.8183 2.3498 41 1 7.0832 7.5018 1.9071 42 1 4.7034 8.3780 1.9635 43 1 4.0938 6.6948 2.4062 44 1 2.9036 3.8849 -2.1325 45 1 2.0755 1.5660 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809572684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:59 Heat of formation + Delta-G solvation = -21.071021 kcal Electronic energy + Delta-G solvation = -23285.217560 eV Core-core repulsion = 20074.292464 eV Total energy + Delta-G solvation = -3210.925096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.63924 -39.40848 -37.12686 -35.85066 -34.25719 -34.11626 -31.77917 -31.19183 -29.65991 -27.18486 -25.64044 -23.70216 -23.63648 -22.92145 -22.59451 -21.47096 -20.98524 -18.92432 -17.24204 -17.08090 -16.64228 -16.49273 -16.25095 -16.12695 -15.94096 -15.46296 -14.76098 -14.69340 -14.52479 -14.40922 -14.15134 -13.80161 -13.57164 -13.31606 -13.05650 -12.87921 -12.73435 -12.66727 -12.50620 -12.39068 -12.17472 -12.05632 -11.90560 -11.66475 -11.59227 -11.10544 -11.02437 -10.92651 -10.68867 -9.94239 -9.73557 -9.41496 -8.99768 -8.10684 -6.36417 0.46568 0.57506 1.39041 1.39919 1.50410 2.38562 2.75621 3.08731 3.14887 3.26654 3.86340 3.92577 4.05149 4.14016 4.19040 4.21610 4.24754 4.38718 4.42186 4.47091 4.53261 4.58217 4.63420 4.64741 4.75038 4.78114 4.83867 4.89171 4.98423 5.08737 5.10698 5.12540 5.21929 5.27070 5.29136 5.40816 5.45635 5.57836 5.64070 5.75824 5.77446 5.83258 6.06524 6.18219 6.27755 6.41728 6.76604 7.36471 7.61826 8.93067 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.004890 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.247684 B = 5724.547852 C = 7392.191991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.128 4.128 5 C -0.106 4.106 6 C -0.089 4.089 7 C 0.095 3.905 8 N -0.511 5.511 9 C 0.055 3.945 10 C 0.247 3.753 11 H 0.011 0.989 12 O -0.556 6.556 13 C -0.587 4.587 14 H 0.054 0.946 15 C 0.030 3.970 16 N -0.896 5.896 17 Si 0.955 3.045 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.267 1.267 21 C 0.023 3.977 22 C -0.144 4.144 23 C -0.164 4.164 24 C -0.123 4.123 25 C -0.129 4.129 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.126 0.874 33 H 0.039 0.961 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.023 0.977 37 H 0.344 0.656 38 H 0.260 0.740 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.295 -1.292 3.468 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.145 4.145 5 C -0.125 4.125 6 C -0.089 4.089 7 C -0.031 4.031 8 N -0.235 5.235 9 C -0.073 4.073 10 C 0.189 3.811 11 H 0.029 0.971 12 O -0.359 6.359 13 C -0.626 4.626 14 H 0.073 0.927 15 C -0.173 4.173 16 N -0.533 5.533 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.191 1.191 21 C -0.086 4.086 22 C -0.182 4.182 23 C -0.201 4.201 24 C -0.142 4.142 25 C -0.147 4.147 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.187 0.813 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.134 0.866 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.869 -2.053 4.418 18.521 hybrid contribution 0.717 0.546 -1.976 2.172 sum -17.152 -1.507 2.442 17.391 Atomic orbital electron populations 1.21709 0.93737 1.02406 1.01950 1.20579 0.96911 0.91315 1.03316 1.20165 0.98925 0.97169 0.92919 1.21240 1.00232 0.94739 0.98337 1.21121 0.98430 0.95250 0.97665 1.19876 0.98951 0.96507 0.93597 1.21069 0.87618 0.92969 1.01479 1.61725 1.04324 1.27411 1.30017 1.22649 0.97082 0.98810 0.88773 1.18960 0.86301 0.83880 0.91962 0.97093 1.86614 1.82019 1.20301 1.46946 1.22036 0.94520 1.49725 0.96290 0.92746 1.25823 0.98131 0.94021 0.99305 1.70226 1.06772 1.47380 1.28952 0.85629 0.78035 0.78369 0.79946 1.19729 1.20942 1.19140 1.22154 1.04582 0.90610 0.91223 1.22595 0.93513 1.01161 1.00911 1.23260 0.96580 1.01256 0.99038 1.21187 0.99693 0.95675 0.97618 1.21183 1.00421 0.94628 0.98458 0.91042 0.92663 0.92960 0.90806 0.90430 0.84530 0.85603 0.94288 0.88694 0.91825 0.95865 0.81286 0.93136 0.90364 0.91485 0.89578 0.87000 0.88280 0.86571 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.89 71.98 0.71 -1.41 16 2 C -0.08 -1.54 6.06 29.85 0.18 -1.36 16 3 C -0.09 -2.23 5.13 -19.87 -0.10 -2.34 16 4 C -0.13 -3.19 9.70 22.27 0.22 -2.97 16 5 C -0.11 -2.95 9.72 22.27 0.22 -2.73 16 6 C -0.09 -2.66 5.03 -19.87 -0.10 -2.76 16 7 C 0.10 2.82 5.07 85.56 0.43 3.26 16 8 N -0.51 -18.54 4.58 -875.52 -4.01 -22.55 16 9 C 0.05 2.32 4.56 86.30 0.39 2.72 16 10 C 0.25 12.93 3.06 29.85 0.09 13.02 16 11 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 12 O -0.56 -28.27 9.27 -148.98 -1.38 -29.65 16 13 C -0.59 -32.91 8.76 25.60 0.22 -32.69 16 14 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 15 C 0.03 1.69 5.40 84.65 0.46 2.15 16 16 N -0.90 -54.40 12.84 21.45 0.28 -54.12 16 17 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C 0.02 0.76 3.47 44.91 0.16 0.92 16 22 C -0.14 -4.93 9.13 30.59 0.28 -4.65 16 23 C -0.16 -4.30 9.51 30.59 0.29 -4.01 16 24 C -0.12 -3.62 8.39 22.27 0.19 -3.43 16 25 C -0.13 -3.41 9.70 22.27 0.22 -3.19 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 30 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 31 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.04 1.12 7.91 -2.39 -0.02 1.11 16 34 H 0.09 2.44 6.31 -2.39 -0.02 2.42 16 35 H 0.06 2.75 6.30 -2.38 -0.02 2.74 16 36 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 37 H 0.34 15.88 8.52 -74.06 -0.63 15.25 16 38 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.08 2.67 7.45 -2.39 -0.02 2.65 16 40 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.11 2.38 8.14 -2.39 -0.02 2.37 16 43 H 0.10 2.42 7.30 -2.39 -0.02 2.40 16 44 H 0.12 3.32 7.98 -2.91 -0.02 3.29 16 45 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -65.29 363.38 1.09 -64.20 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.33 Total: 35.55 kcal Atomic # 6 Polarization: -43.33 SS G_CDS: 3.85 Total: -39.48 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -3.73 Total: -76.67 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -1.38 Total: -29.65 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -65.29 1.09 -64.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.127 kcal (2) G-P(sol) polarization free energy of solvation -65.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds