Wall clock time and date at job start Tue Mar 31 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.50649 * 2 1 4 4 C 1.38237 * 119.99780 * 239.81014 * 3 2 1 5 5 C 1.38239 * 119.99777 * 180.32154 * 4 3 2 6 6 C 1.38227 * 120.00041 * 359.94767 * 5 4 3 7 7 C 1.38237 * 120.00054 * 0.02845 * 6 5 4 8 8 C 1.38227 * 119.99985 * 60.07934 * 3 2 1 9 9 C 1.53120 * 109.50973 * 120.08042 * 2 1 3 10 10 C 1.53123 * 109.16128 * 62.31735 * 9 2 1 11 11 C 1.53043 * 109.27353 * 57.66231 * 10 9 2 12 12 N 1.46847 * 109.52286 * 300.81737 * 11 10 9 13 13 C 1.46897 * 111.00228 * 185.83827 * 12 11 10 14 14 C 1.52995 * 109.47239 * 183.82862 * 13 12 11 15 15 H 1.08999 * 109.46828 * 61.29087 * 14 13 12 16 16 O 1.42902 * 109.47510 * 301.28532 * 14 13 12 17 17 C 1.50705 * 109.47080 * 181.28458 * 14 13 12 18 18 H 1.07999 * 119.99668 * 0.02562 * 17 14 13 19 19 C 1.37871 * 119.99990 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00454 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00095 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47090 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47601 * 119.99971 * 21 19 17 24 24 H 1.48498 * 109.47190 * 240.00276 * 21 19 17 25 25 C 1.46848 * 111.19819 * 61.74281 * 12 11 10 26 26 H 1.08999 * 109.47646 * 60.00216 * 1 2 3 27 27 H 1.09001 * 109.47559 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46543 * 299.99928 * 1 2 3 29 29 H 1.07997 * 120.00063 * 0.26722 * 4 3 2 30 30 H 1.08001 * 119.99665 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.00125 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.99874 * 179.97438 * 7 6 5 33 33 H 1.08001 * 120.00391 * 359.72280 * 8 3 2 34 34 H 1.08993 * 109.52674 * 182.23161 * 9 2 1 35 35 H 1.09002 * 109.52046 * 302.42427 * 9 2 1 36 36 H 1.08996 * 109.50277 * 177.59398 * 10 9 2 37 37 H 1.08999 * 109.50344 * 297.72681 * 10 9 2 38 38 H 1.09000 * 109.46159 * 60.83137 * 11 10 9 39 39 H 1.08993 * 109.46157 * 180.81445 * 11 10 9 40 40 H 1.08995 * 109.47344 * 303.83422 * 13 12 11 41 41 H 1.09004 * 109.46857 * 63.83174 * 13 12 11 42 42 H 0.96691 * 113.99920 * 300.00017 * 16 14 13 43 43 H 0.96996 * 120.00219 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.46948 * 178.23977 * 25 12 11 45 45 H 1.09005 * 109.46151 * 58.27414 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 6 2.8314 1.8710 -1.0348 5 6 3.2985 3.1720 -1.0314 6 6 2.9664 4.0229 0.0061 7 6 2.1677 3.5726 1.0406 8 6 1.7011 2.2714 1.0375 9 6 2.0413 -0.7234 1.2489 10 6 1.5758 -2.1817 1.2111 11 6 2.0862 -2.8417 -0.0719 12 7 1.5690 -2.1137 -1.2376 13 6 1.9245 -2.7997 -2.4870 14 6 1.4531 -1.9647 -3.6792 15 1 1.9522 -0.9959 -3.6643 16 8 0.0392 -1.7736 -3.5977 17 6 1.7897 -2.6835 -4.9603 18 1 2.2895 -3.6403 -4.9274 19 6 1.4596 -2.1196 -6.1744 20 7 0.8514 -0.9542 -6.2146 21 14 1.8762 -3.0109 -7.7623 22 1 2.5545 -4.2937 -7.4467 23 1 0.6280 -3.2835 -8.5192 24 1 2.7779 -2.1637 -8.5835 25 6 2.0416 -0.7234 -1.2478 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 3.0908 1.2062 -1.8454 30 1 3.9225 3.5238 -1.8397 31 1 3.3310 5.0395 0.0085 32 1 1.9087 4.2372 1.8515 33 1 1.0773 1.9195 1.8460 34 1 3.1305 -0.6891 1.2695 35 1 1.6437 -0.2373 2.1398 36 1 1.9725 -2.7129 2.0762 37 1 0.4865 -2.2165 1.2297 38 1 3.1759 -2.8187 -0.0835 39 1 1.7443 -3.8760 -0.1090 40 1 3.0059 -2.9263 -2.5370 41 1 1.4426 -3.7770 -2.5146 42 1 -0.4699 -2.5955 -3.6059 43 1 0.6195 -0.5574 -7.0687 44 1 1.6677 -0.2191 -2.1389 45 1 3.1316 -0.7103 -1.2539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809575264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:03 Heat of formation + Delta-G solvation = -29.631876 kcal Electronic energy + Delta-G solvation = -24063.629976 eV Core-core repulsion = 20852.333654 eV Total energy + Delta-G solvation = -3211.296322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18085 -38.16986 -35.85022 -33.80249 -32.11139 -31.92106 -30.77525 -29.14560 -28.12242 -26.59317 -25.23725 -23.50366 -23.05814 -21.83483 -20.83217 -19.95803 -18.26771 -17.27112 -16.67609 -15.36119 -15.05665 -14.87419 -14.66882 -14.39845 -14.15763 -14.05372 -13.66307 -13.60904 -13.31297 -13.12866 -12.77672 -12.50983 -12.28523 -12.06198 -11.74318 -11.52581 -11.19541 -11.10567 -10.93044 -10.90866 -10.77908 -10.71753 -10.63170 -10.28892 -10.09054 -10.03501 -9.83115 -8.87861 -8.75653 -8.54331 -8.49568 -8.03243 -7.60143 -5.99752 -4.17705 1.52941 1.56238 3.26804 3.35318 3.38353 3.94860 4.32624 4.47945 4.82372 4.91411 5.10152 5.16591 5.18092 5.22249 5.28427 5.39239 5.44012 5.56812 5.66102 5.73736 5.78762 5.87793 5.93974 6.03533 6.08385 6.14876 6.17316 6.20471 6.22986 6.26923 6.35343 6.41420 6.44085 6.56506 6.57522 6.65261 6.68474 6.85002 6.86294 6.90135 7.17248 7.61598 7.71636 7.81186 7.88202 8.21957 8.86148 9.47418 9.63504 11.04292 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.004890 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.924639 B = 5724.828091 C = 6830.848853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.018 4.018 3 C -0.060 4.060 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.132 4.132 7 C -0.124 4.124 8 C -0.117 4.117 9 C -0.104 4.104 10 C -0.116 4.116 11 C 0.052 3.948 12 N -0.523 5.523 13 C 0.030 3.970 14 C 0.234 3.766 15 H 0.055 0.945 16 O -0.554 6.554 17 C -0.574 4.574 18 H 0.054 0.946 19 C 0.081 3.919 20 N -0.858 5.858 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.065 3.935 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.023 0.977 39 H 0.068 0.932 40 H 0.023 0.977 41 H 0.064 0.936 42 H 0.344 0.656 43 H 0.259 0.741 44 H 0.096 0.904 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 4.330 15.555 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.018 4.018 3 C -0.061 4.061 4 C -0.134 4.134 5 C -0.135 4.135 6 C -0.150 4.150 7 C -0.142 4.142 8 C -0.135 4.135 9 C -0.141 4.141 10 C -0.153 4.153 11 C -0.076 4.076 12 N -0.247 5.247 13 C -0.097 4.097 14 C 0.176 3.824 15 H 0.072 0.928 16 O -0.355 6.355 17 C -0.612 4.612 18 H 0.073 0.927 19 C -0.125 4.125 20 N -0.494 5.494 21 Si 0.714 3.286 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.063 4.063 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.187 0.813 43 H 0.069 0.931 44 H 0.114 0.886 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.261 5.109 15.494 16.471 hybrid contribution 1.163 -1.047 -1.112 1.920 sum 3.424 4.063 14.382 15.332 Atomic orbital electron populations 1.21733 0.92637 1.03023 1.00704 1.19521 0.96842 0.89924 0.95516 1.19909 0.96404 0.95478 0.94276 1.21324 0.97431 0.96112 0.98568 1.21166 1.00042 0.93974 0.98367 1.21075 0.99475 0.99461 0.94991 1.21056 0.98612 0.95862 0.98662 1.20930 1.00443 0.93637 0.98506 1.21633 1.00125 0.95551 0.96813 1.21619 1.01932 0.95167 0.96624 1.22090 0.96512 0.97803 0.91245 1.61883 1.59302 1.01456 1.02073 1.23052 0.97659 0.98751 0.90245 1.19368 0.80160 0.94448 0.88440 0.92786 1.86542 1.18961 1.33467 1.96551 1.21699 1.41410 1.06451 0.91666 0.92732 1.25004 0.94016 0.94538 0.98977 1.70084 1.38069 1.15961 1.25272 0.86652 0.78194 0.79954 0.83779 1.19764 1.20854 1.20946 1.22262 0.96076 0.89794 0.98177 0.92362 0.90659 0.94100 0.85393 0.86253 0.86608 0.86568 0.86404 0.92568 0.92120 0.92220 0.90787 0.95893 0.91367 0.95858 0.91729 0.81314 0.93074 0.88591 0.95881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 7.85 37.15 0.29 -1.57 16 2 C -0.02 -0.26 0.60 -155.58 -0.09 -0.35 16 3 C -0.06 -0.88 4.76 -104.63 -0.50 -1.37 16 4 C -0.12 -1.77 8.98 -39.58 -0.36 -2.13 16 5 C -0.12 -1.58 10.05 -39.59 -0.40 -1.98 16 6 C -0.13 -1.59 10.05 -39.59 -0.40 -1.99 16 7 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 8 C -0.12 -1.50 8.74 -39.59 -0.35 -1.85 16 9 C -0.10 -1.33 4.56 -26.61 -0.12 -1.45 16 10 C -0.12 -1.45 5.74 -26.65 -0.15 -1.60 16 11 C 0.05 0.77 5.46 -3.83 -0.02 0.75 16 12 N -0.52 -9.31 3.89 -234.67 -0.91 -10.22 16 13 C 0.03 0.62 4.73 -3.83 -0.02 0.61 16 14 C 0.23 5.80 2.24 -27.88 -0.06 5.74 16 15 H 0.05 1.47 6.27 -51.93 -0.33 1.15 16 16 O -0.55 -14.11 12.57 -35.23 -0.44 -14.56 16 17 C -0.57 -15.62 8.76 -34.44 -0.30 -15.93 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 20 N -0.86 -25.21 12.84 55.43 0.71 -24.50 16 21 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.06 1.14 2.42 -3.83 -0.01 1.13 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.18 6.01 -51.93 -0.31 0.87 16 28 H 0.04 0.52 7.39 -51.93 -0.38 0.14 16 29 H 0.13 2.07 5.90 -52.49 -0.31 1.76 16 30 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.31 7.14 -52.49 -0.37 0.94 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.69 7.49 -51.93 -0.39 0.30 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.94 6.58 -51.93 -0.34 0.60 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.34 7.98 9.04 45.56 0.41 8.39 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.10 2.01 5.30 -51.93 -0.28 1.73 16 45 H 0.02 0.41 7.46 -51.93 -0.39 0.02 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -29.68 346.32 -9.88 -39.55 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.46 Total: 10.12 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.98 Total: -21.69 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.20 Total: -34.72 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.44 Total: -14.56 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.68 -9.88 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809575264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.923 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds