Wall clock time and date at job start Tue Mar 31 2020 05:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.50649 * 2 1 4 4 C 1.38237 * 119.99780 * 239.81014 * 3 2 1 5 5 C 1.38239 * 119.99777 * 180.32154 * 4 3 2 6 6 C 1.38227 * 120.00041 * 359.94767 * 5 4 3 7 7 C 1.38237 * 120.00054 * 0.02845 * 6 5 4 8 8 C 1.38227 * 119.99985 * 60.07934 * 3 2 1 9 9 C 1.53120 * 109.50973 * 120.08042 * 2 1 3 10 10 C 1.53123 * 109.16128 * 62.31735 * 9 2 1 11 11 C 1.53043 * 109.27353 * 57.66231 * 10 9 2 12 12 N 1.46847 * 109.52286 * 300.81737 * 11 10 9 13 13 C 1.46897 * 111.00228 * 185.83827 * 12 11 10 14 14 C 1.52995 * 109.47239 * 183.82862 * 13 12 11 15 15 H 1.08999 * 109.46828 * 61.29087 * 14 13 12 16 16 O 1.42902 * 109.47510 * 301.28532 * 14 13 12 17 17 C 1.50705 * 109.47080 * 181.28458 * 14 13 12 18 18 H 1.07999 * 119.99668 * 0.02562 * 17 14 13 19 19 C 1.37871 * 119.99990 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00454 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00095 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47090 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47601 * 119.99971 * 21 19 17 24 24 H 1.48498 * 109.47190 * 240.00276 * 21 19 17 25 25 C 1.46848 * 111.19819 * 61.74281 * 12 11 10 26 26 H 1.08999 * 109.47646 * 60.00216 * 1 2 3 27 27 H 1.09001 * 109.47559 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46543 * 299.99928 * 1 2 3 29 29 H 1.07997 * 120.00063 * 0.26722 * 4 3 2 30 30 H 1.08001 * 119.99665 * 179.97438 * 5 4 3 31 31 H 1.08003 * 120.00125 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.99874 * 179.97438 * 7 6 5 33 33 H 1.08001 * 120.00391 * 359.72280 * 8 3 2 34 34 H 1.08993 * 109.52674 * 182.23161 * 9 2 1 35 35 H 1.09002 * 109.52046 * 302.42427 * 9 2 1 36 36 H 1.08996 * 109.50277 * 177.59398 * 10 9 2 37 37 H 1.08999 * 109.50344 * 297.72681 * 10 9 2 38 38 H 1.09000 * 109.46159 * 60.83137 * 11 10 9 39 39 H 1.08993 * 109.46157 * 180.81445 * 11 10 9 40 40 H 1.08995 * 109.47344 * 303.83422 * 13 12 11 41 41 H 1.09004 * 109.46857 * 63.83174 * 13 12 11 42 42 H 0.96691 * 113.99920 * 300.00017 * 16 14 13 43 43 H 0.96996 * 120.00219 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.46948 * 178.23977 * 25 12 11 45 45 H 1.09005 * 109.46151 * 58.27414 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 6 2.8314 1.8710 -1.0348 5 6 3.2985 3.1720 -1.0314 6 6 2.9664 4.0229 0.0061 7 6 2.1677 3.5726 1.0406 8 6 1.7011 2.2714 1.0375 9 6 2.0413 -0.7234 1.2489 10 6 1.5758 -2.1817 1.2111 11 6 2.0862 -2.8417 -0.0719 12 7 1.5690 -2.1137 -1.2376 13 6 1.9245 -2.7997 -2.4870 14 6 1.4531 -1.9647 -3.6792 15 1 1.9522 -0.9959 -3.6643 16 8 0.0392 -1.7736 -3.5977 17 6 1.7897 -2.6835 -4.9603 18 1 2.2895 -3.6403 -4.9274 19 6 1.4596 -2.1196 -6.1744 20 7 0.8514 -0.9542 -6.2146 21 14 1.8762 -3.0109 -7.7623 22 1 2.5545 -4.2937 -7.4467 23 1 0.6280 -3.2835 -8.5192 24 1 2.7779 -2.1637 -8.5835 25 6 2.0416 -0.7234 -1.2478 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 3.0908 1.2062 -1.8454 30 1 3.9225 3.5238 -1.8397 31 1 3.3310 5.0395 0.0085 32 1 1.9087 4.2372 1.8515 33 1 1.0773 1.9195 1.8460 34 1 3.1305 -0.6891 1.2695 35 1 1.6437 -0.2373 2.1398 36 1 1.9725 -2.7129 2.0762 37 1 0.4865 -2.2165 1.2297 38 1 3.1759 -2.8187 -0.0835 39 1 1.7443 -3.8760 -0.1090 40 1 3.0059 -2.9263 -2.5370 41 1 1.4426 -3.7770 -2.5146 42 1 -0.4699 -2.5955 -3.6059 43 1 0.6195 -0.5574 -7.0687 44 1 1.6677 -0.2191 -2.1389 45 1 3.1316 -0.7103 -1.2539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809575264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:02 Heat of formation + Delta-G solvation = -48.100081 kcal Electronic energy + Delta-G solvation = -24064.430818 eV Core-core repulsion = 20852.333654 eV Total energy + Delta-G solvation = -3212.097164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36581 -39.39162 -37.63058 -35.24341 -34.22197 -33.18170 -31.82406 -30.24710 -29.97366 -27.85980 -26.97292 -24.96814 -24.23530 -23.06130 -21.99986 -21.61333 -19.48052 -19.13009 -17.96043 -16.70488 -16.56495 -16.50136 -16.12004 -16.00292 -15.60915 -15.42039 -15.01119 -14.93058 -14.60716 -14.32248 -14.28213 -13.81647 -13.61949 -13.29671 -13.10039 -12.97375 -12.84780 -12.79377 -12.65799 -12.34670 -12.23922 -12.03780 -12.02051 -11.78156 -11.47677 -11.28673 -11.09078 -10.84932 -10.64721 -10.04996 -9.78524 -9.53329 -9.08898 -8.14425 -6.40447 0.50756 0.53268 1.37656 1.38922 1.51036 2.36958 2.92181 3.02806 3.12204 3.67850 3.78434 3.99665 4.13076 4.17867 4.21135 4.24768 4.30243 4.32253 4.34735 4.48290 4.56134 4.64090 4.65417 4.72858 4.79145 4.81213 4.91392 4.99984 5.04492 5.05603 5.09650 5.14359 5.18390 5.26352 5.32349 5.36590 5.58834 5.61817 5.65491 5.67206 5.75504 5.80650 6.01847 6.16817 6.23152 6.37134 6.73115 7.33950 7.61881 8.90045 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.004890 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.924639 B = 5724.828091 C = 6830.848853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.012 4.012 3 C -0.076 4.076 4 C -0.147 4.147 5 C -0.131 4.131 6 C -0.132 4.132 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.098 4.098 10 C -0.109 4.109 11 C 0.048 3.952 12 N -0.526 5.526 13 C 0.046 3.954 14 C 0.238 3.762 15 H 0.018 0.982 16 O -0.567 6.567 17 C -0.589 4.589 18 H 0.057 0.943 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.959 3.041 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.280 1.280 25 C 0.076 3.924 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.021 0.979 39 H 0.078 0.922 40 H 0.017 0.983 41 H 0.072 0.928 42 H 0.352 0.648 43 H 0.261 0.739 44 H 0.051 0.949 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 4.229 18.013 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.013 4.013 3 C -0.076 4.076 4 C -0.165 4.165 5 C -0.149 4.149 6 C -0.149 4.149 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.136 4.136 10 C -0.146 4.146 11 C -0.080 4.080 12 N -0.250 5.250 13 C -0.082 4.082 14 C 0.180 3.820 15 H 0.036 0.964 16 O -0.370 6.370 17 C -0.628 4.628 18 H 0.076 0.924 19 C -0.175 4.175 20 N -0.536 5.536 21 Si 0.783 3.217 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.206 1.206 25 C -0.052 4.052 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.039 0.961 39 H 0.097 0.903 40 H 0.035 0.965 41 H 0.090 0.910 42 H 0.197 0.803 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 2.262 4.992 17.967 18.784 hybrid contribution 1.175 -0.956 -1.865 2.403 sum 3.437 4.036 16.102 16.952 Atomic orbital electron populations 1.21652 0.92749 1.02451 1.00430 1.19469 0.96566 0.90303 0.94924 1.19965 0.96941 0.95716 0.94982 1.21277 0.99511 0.96951 0.98748 1.21353 1.00404 0.93572 0.99532 1.21433 0.98918 1.00391 0.94202 1.21487 0.97262 0.95837 0.99116 1.21191 1.00405 0.93838 0.98223 1.21622 0.99964 0.95678 0.96311 1.21618 1.02067 0.94934 0.96027 1.22251 0.96504 0.98289 0.90963 1.61874 1.59599 1.01556 1.02006 1.22689 0.97009 0.98259 0.90244 1.19160 0.79685 0.93216 0.89910 0.96394 1.86499 1.19487 1.34308 1.96692 1.22097 1.41138 1.06602 0.92922 0.92433 1.25869 0.93766 0.95196 1.02636 1.70231 1.39497 1.17677 1.26179 0.85528 0.78048 0.78905 0.79194 1.18730 1.20313 1.20581 1.22061 0.95134 0.89773 0.98258 0.95676 0.91334 0.91177 0.88315 0.85585 0.83787 0.83146 0.84062 0.92905 0.89445 0.89164 0.90590 0.96087 0.90325 0.96493 0.90957 0.80339 0.93042 0.93106 0.97083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 7.85 71.98 0.57 -2.89 16 2 C -0.01 -0.36 0.60 -52.88 -0.03 -0.39 16 3 C -0.08 -2.21 4.76 -19.87 -0.09 -2.31 16 4 C -0.15 -4.78 8.98 22.27 0.20 -4.58 16 5 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 6 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 7 C -0.12 -2.44 10.05 22.27 0.22 -2.22 16 8 C -0.12 -2.76 8.74 22.27 0.19 -2.56 16 9 C -0.10 -2.29 4.56 30.68 0.14 -2.15 16 10 C -0.11 -2.43 5.74 30.65 0.18 -2.25 16 11 C 0.05 1.36 5.46 86.33 0.47 1.83 16 12 N -0.53 -19.23 3.89 -896.36 -3.49 -22.72 16 13 C 0.05 1.96 4.73 86.30 0.41 2.37 16 14 C 0.24 12.49 2.24 29.85 0.07 12.56 16 15 H 0.02 1.08 6.27 -2.39 -0.01 1.07 16 16 O -0.57 -30.38 12.57 -148.98 -1.87 -32.25 16 17 C -0.59 -33.07 8.76 25.60 0.22 -32.84 16 18 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 19 C 0.03 1.58 5.40 84.65 0.46 2.04 16 20 N -0.90 -54.80 12.84 21.45 0.28 -54.52 16 21 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 C 0.08 2.86 2.42 86.33 0.21 3.06 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 2.12 6.01 -2.39 -0.01 2.10 16 28 H 0.07 1.65 7.39 -2.39 -0.02 1.63 16 29 H 0.10 3.67 5.90 -2.91 -0.02 3.66 16 30 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.14 2.57 7.14 -2.91 -0.02 2.55 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.62 7.49 -2.39 -0.02 1.60 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.71 6.58 -2.39 -0.02 1.69 16 38 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.35 16.98 9.04 -74.06 -0.67 16.31 16 43 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 44 H 0.05 2.37 5.30 -2.39 -0.01 2.35 16 45 H 0.01 0.43 7.46 -2.38 -0.02 0.41 16 Total: -1.00 -67.17 346.32 0.90 -66.27 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: 0.30 Total: 33.58 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 3.66 Total: -36.40 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -3.21 Total: -77.25 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.87 Total: -32.25 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.17 0.90 -66.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809575264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.173 kcal (2) G-P(sol) polarization free energy of solvation -67.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds