Wall clock time and date at job start Tue Mar 31 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47658 * 2 1 4 4 C 1.38172 * 120.02410 * 264.72210 * 3 2 1 5 5 C 1.38247 * 120.05388 * 179.76206 * 4 3 2 6 6 C 1.38292 * 120.11111 * 0.51380 * 5 4 3 7 7 C 1.38120 * 120.05612 * 359.74159 * 6 5 4 8 8 C 1.50703 * 120.03188 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47057 * 96.66017 * 8 7 6 10 10 C 1.46847 * 110.99965 * 69.41057 * 9 8 7 11 11 C 1.53040 * 109.52395 * 174.16321 * 10 9 8 12 12 C 1.53118 * 109.28181 * 59.17652 * 11 10 9 13 13 C 1.53122 * 109.16169 * 302.35117 * 12 11 10 14 14 H 1.08998 * 109.50317 * 297.66938 * 13 12 11 15 15 C 1.50696 * 109.50254 * 177.59477 * 13 12 11 16 16 H 1.08005 * 119.99600 * 239.99612 * 15 13 12 17 17 C 1.37873 * 120.00460 * 59.99620 * 15 13 12 18 18 N 1.31516 * 119.99819 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00406 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46851 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47158 * 119.99915 * 19 17 15 22 22 H 1.48499 * 109.46798 * 240.00380 * 19 17 15 23 23 C 1.46848 * 111.00081 * 305.20331 * 9 8 7 24 24 C 1.38713 * 120.03276 * 84.99193 * 3 2 1 25 25 O 1.35902 * 120.05116 * 0.02562 * 24 3 2 26 26 H 1.09002 * 109.46659 * 60.00103 * 1 2 3 27 27 H 1.08996 * 109.47893 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47161 * 300.00922 * 1 2 3 29 29 H 1.08997 * 109.47306 * 239.99541 * 2 1 3 30 30 H 1.09007 * 109.46831 * 119.99456 * 2 1 3 31 31 H 1.08000 * 119.97148 * 0.02586 * 4 3 2 32 32 H 1.07994 * 119.94519 * 180.25006 * 5 4 3 33 33 H 1.07997 * 119.97377 * 179.71931 * 6 5 4 34 34 H 1.08993 * 109.47721 * 216.66139 * 8 7 6 35 35 H 1.09003 * 109.46400 * 336.66341 * 8 7 6 36 36 H 1.09007 * 109.46116 * 294.17648 * 10 9 8 37 37 H 1.08993 * 109.46304 * 54.14425 * 10 9 8 38 38 H 1.08994 * 109.50223 * 179.12412 * 11 10 9 39 39 H 1.09000 * 109.49901 * 299.23970 * 11 10 9 40 40 H 1.09003 * 109.51783 * 62.25114 * 12 11 10 41 41 H 1.08999 * 109.52517 * 182.37990 * 12 11 10 42 42 H 0.96994 * 120.00071 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.46203 * 305.85402 * 23 9 8 44 44 H 1.08997 * 109.46606 * 65.82076 * 23 9 8 45 45 H 0.96695 * 114.00082 * 85.17393 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3667 2.0358 -1.1912 5 6 2.8230 3.3408 -1.1924 6 6 2.9563 4.0303 -0.0010 7 6 2.6284 3.4181 1.1929 8 6 2.7733 4.1702 2.4908 9 7 1.4754 4.7427 2.8724 10 6 0.5302 3.6893 3.2641 11 6 -0.7568 4.3274 3.7919 12 6 -1.3693 5.2082 2.6994 13 6 -0.3473 6.2665 2.2752 14 1 -0.1132 6.9076 3.1251 15 6 -0.9206 7.1007 1.1588 16 1 -0.4236 7.1353 0.2005 17 6 -2.0797 7.8196 1.3605 18 7 -2.6846 7.7778 2.5276 19 14 -2.7900 8.8541 -0.0232 20 1 -1.9262 8.7334 -1.2250 21 1 -4.1583 8.3762 -0.3463 22 1 -2.8497 10.2757 0.4021 23 6 0.9278 5.5722 1.7914 24 6 2.1651 2.1102 1.1963 25 8 1.8426 1.5053 2.3698 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.2673 1.4981 -2.1226 32 1 3.0800 3.8212 -2.1249 33 1 3.3173 5.0481 -0.0042 34 1 3.1127 3.4880 3.2702 35 1 3.5017 4.9716 2.3669 36 1 0.2993 3.0684 2.3985 37 1 0.9764 3.0729 4.0444 38 1 -1.4640 3.5453 4.0680 39 1 -0.5286 4.9375 4.6658 40 1 -1.6334 4.5918 1.8401 41 1 -2.2635 5.6980 3.0851 42 1 -3.5002 8.2833 2.6694 43 1 1.6629 6.3233 1.5021 44 1 0.6950 4.9425 0.9327 45 1 2.5577 0.9764 2.7491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826861265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:20 Heat of formation + Delta-G solvation = -33.499332 kcal Electronic energy + Delta-G solvation = -24293.877144 eV Core-core repulsion = 21082.413116 eV Total energy + Delta-G solvation = -3211.464028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33261 -37.83516 -36.55789 -34.60726 -33.34964 -31.89610 -29.77790 -29.67542 -28.90367 -25.80825 -24.86608 -23.92528 -22.44925 -21.37675 -21.18162 -20.20585 -18.61015 -17.94404 -16.38087 -16.03001 -15.78663 -15.29955 -14.83206 -14.34667 -14.05749 -13.83015 -13.68864 -13.59045 -13.25125 -12.92733 -12.48487 -12.41566 -12.23406 -12.07185 -11.73405 -11.68792 -11.51548 -11.29704 -11.06523 -10.92057 -10.90221 -10.57543 -10.48638 -10.23066 -9.94244 -9.70929 -9.38427 -8.97342 -8.63141 -8.51536 -8.40509 -8.22960 -7.54760 -5.91033 -3.96688 1.36228 1.41148 3.33173 3.40939 3.44772 3.70710 4.28123 4.47066 4.71077 4.74059 4.87205 5.08120 5.16470 5.35159 5.38643 5.38963 5.47300 5.53216 5.67112 5.83252 5.86371 5.94111 5.96217 6.06465 6.11334 6.18012 6.27279 6.28647 6.48224 6.53273 6.56292 6.57513 6.67373 6.68769 6.88905 6.90250 6.94879 7.08539 7.33369 7.50863 7.73785 7.79659 7.82925 7.94090 8.17323 8.26140 8.56653 9.07590 9.67069 11.14990 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.005118 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.222258 B = 5469.613476 C = 5804.185762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.114 4.114 4 C -0.111 4.111 5 C -0.126 4.126 6 C -0.095 4.095 7 C -0.130 4.130 8 C 0.098 3.902 9 N -0.526 5.526 10 C 0.070 3.930 11 C -0.120 4.120 12 C -0.108 4.108 13 C 0.054 3.946 14 H 0.032 0.968 15 C -0.510 4.510 16 H 0.052 0.948 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.068 3.932 24 C 0.115 3.885 25 O -0.484 6.484 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.027 0.973 41 H 0.088 0.912 42 H 0.258 0.742 43 H 0.053 0.947 44 H 0.023 0.977 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.508 -14.640 -3.161 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.115 4.115 4 C -0.129 4.129 5 C -0.144 4.144 6 C -0.114 4.114 7 C -0.133 4.133 8 C -0.031 4.031 9 N -0.248 5.248 10 C -0.057 4.057 11 C -0.158 4.158 12 C -0.147 4.147 13 C 0.035 3.965 14 H 0.050 0.950 15 C -0.549 4.549 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.716 3.284 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.059 4.059 24 C 0.070 3.930 25 O -0.293 6.293 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 10.863 -13.969 -2.710 17.902 hybrid contribution -0.210 -0.140 -1.512 1.533 sum 10.653 -14.109 -4.222 18.177 Atomic orbital electron populations 1.21715 0.94473 1.01319 1.02757 1.20343 0.96511 0.92193 1.01982 1.20190 1.01300 0.96976 0.93019 1.20858 0.99888 0.95231 0.96923 1.21111 1.00562 0.94644 0.98084 1.21000 0.99189 0.99592 0.91586 1.21060 0.99421 0.94726 0.98081 1.21157 0.94054 0.96648 0.91200 1.62443 1.02549 1.20903 1.38881 1.22026 0.92900 0.91958 0.98842 1.21711 0.95186 0.98684 1.00170 1.21619 1.01808 0.96075 0.95152 1.18665 0.88791 0.92641 0.96355 0.94981 1.21184 1.08633 1.26908 0.98188 0.92941 1.24927 0.96910 0.96607 0.95413 1.69909 1.18808 1.41867 1.22188 0.86606 0.78970 0.80233 0.82600 1.19902 1.21136 1.21056 1.22290 0.98274 0.94535 0.90779 1.18020 0.98785 0.91169 0.85032 1.85041 1.41146 1.67522 1.35615 0.92777 0.92747 0.91871 0.91629 0.91375 0.86235 0.86082 0.85772 0.90831 0.90620 0.94555 0.92406 0.93819 0.92464 0.95436 0.89325 0.93201 0.92807 0.95873 0.76843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.89 37.16 0.37 -1.30 16 2 C -0.07 -0.77 5.79 -27.89 -0.16 -0.93 16 3 C -0.11 -1.47 5.15 -104.47 -0.54 -2.01 16 4 C -0.11 -1.39 9.68 -39.60 -0.38 -1.77 16 5 C -0.13 -1.65 10.04 -39.56 -0.40 -2.04 16 6 C -0.09 -1.37 8.55 -39.60 -0.34 -1.71 16 7 C -0.13 -1.95 3.94 -104.47 -0.41 -2.36 16 8 C 0.10 1.51 5.42 -4.97 -0.03 1.48 16 9 N -0.53 -10.12 4.86 -236.11 -1.15 -11.27 16 10 C 0.07 1.34 3.93 -3.83 -0.02 1.32 16 11 C -0.12 -2.52 6.09 -26.65 -0.16 -2.69 16 12 C -0.11 -2.72 5.02 -26.61 -0.13 -2.85 16 13 C 0.05 1.41 2.26 -91.69 -0.21 1.21 16 14 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.51 -14.41 8.56 -34.44 -0.29 -14.71 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -26.01 11.35 55.43 0.63 -25.38 16 19 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.07 1.51 3.81 -3.83 -0.01 1.49 16 24 C 0.12 1.60 5.54 -39.21 -0.22 1.38 16 25 O -0.48 -6.02 9.06 -19.43 -0.18 -6.19 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 29 H 0.07 0.59 8.05 -51.93 -0.42 0.18 16 30 H 0.07 0.64 7.69 -51.92 -0.40 0.24 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.07 1.01 7.60 -51.93 -0.39 0.61 16 35 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 36 H 0.04 0.74 5.76 -51.93 -0.30 0.44 16 37 H 0.06 1.00 7.57 -51.93 -0.39 0.60 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 43 H 0.05 1.17 8.12 -51.93 -0.42 0.75 16 44 H 0.02 0.54 6.73 -51.93 -0.35 0.19 16 45 H 0.38 2.93 9.06 45.56 0.41 3.34 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -30.86 347.12 -10.28 -41.14 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.77 Total: 3.55 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -3.03 Total: -23.81 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.52 Total: -36.65 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.18 Total: -6.19 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.86 -10.28 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.638 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds