Wall clock time and date at job start Tue Mar 31 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47658 * 2 1 4 4 C 1.38172 * 120.02410 * 264.72210 * 3 2 1 5 5 C 1.38247 * 120.05388 * 179.76206 * 4 3 2 6 6 C 1.38292 * 120.11111 * 0.51380 * 5 4 3 7 7 C 1.38120 * 120.05612 * 359.74159 * 6 5 4 8 8 C 1.50703 * 120.03188 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47057 * 96.66017 * 8 7 6 10 10 C 1.46847 * 110.99965 * 69.41057 * 9 8 7 11 11 C 1.53040 * 109.52395 * 174.16321 * 10 9 8 12 12 C 1.53118 * 109.28181 * 59.17652 * 11 10 9 13 13 C 1.53122 * 109.16169 * 302.35117 * 12 11 10 14 14 H 1.08998 * 109.50317 * 297.66938 * 13 12 11 15 15 C 1.50696 * 109.50254 * 177.59477 * 13 12 11 16 16 H 1.08005 * 119.99600 * 239.99612 * 15 13 12 17 17 C 1.37873 * 120.00460 * 59.99620 * 15 13 12 18 18 N 1.31516 * 119.99819 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00406 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46851 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47158 * 119.99915 * 19 17 15 22 22 H 1.48499 * 109.46798 * 240.00380 * 19 17 15 23 23 C 1.46848 * 111.00081 * 305.20331 * 9 8 7 24 24 C 1.38713 * 120.03276 * 84.99193 * 3 2 1 25 25 O 1.35902 * 120.05116 * 0.02562 * 24 3 2 26 26 H 1.09002 * 109.46659 * 60.00103 * 1 2 3 27 27 H 1.08996 * 109.47893 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47161 * 300.00922 * 1 2 3 29 29 H 1.08997 * 109.47306 * 239.99541 * 2 1 3 30 30 H 1.09007 * 109.46831 * 119.99456 * 2 1 3 31 31 H 1.08000 * 119.97148 * 0.02586 * 4 3 2 32 32 H 1.07994 * 119.94519 * 180.25006 * 5 4 3 33 33 H 1.07997 * 119.97377 * 179.71931 * 6 5 4 34 34 H 1.08993 * 109.47721 * 216.66139 * 8 7 6 35 35 H 1.09003 * 109.46400 * 336.66341 * 8 7 6 36 36 H 1.09007 * 109.46116 * 294.17648 * 10 9 8 37 37 H 1.08993 * 109.46304 * 54.14425 * 10 9 8 38 38 H 1.08994 * 109.50223 * 179.12412 * 11 10 9 39 39 H 1.09000 * 109.49901 * 299.23970 * 11 10 9 40 40 H 1.09003 * 109.51783 * 62.25114 * 12 11 10 41 41 H 1.08999 * 109.52517 * 182.37990 * 12 11 10 42 42 H 0.96994 * 120.00071 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.46203 * 305.85402 * 23 9 8 44 44 H 1.08997 * 109.46606 * 65.82076 * 23 9 8 45 45 H 0.96695 * 114.00082 * 85.17393 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3667 2.0358 -1.1912 5 6 2.8230 3.3408 -1.1924 6 6 2.9563 4.0303 -0.0010 7 6 2.6284 3.4181 1.1929 8 6 2.7733 4.1702 2.4908 9 7 1.4754 4.7427 2.8724 10 6 0.5302 3.6893 3.2641 11 6 -0.7568 4.3274 3.7919 12 6 -1.3693 5.2082 2.6994 13 6 -0.3473 6.2665 2.2752 14 1 -0.1132 6.9076 3.1251 15 6 -0.9206 7.1007 1.1588 16 1 -0.4236 7.1353 0.2005 17 6 -2.0797 7.8196 1.3605 18 7 -2.6846 7.7778 2.5276 19 14 -2.7900 8.8541 -0.0232 20 1 -1.9262 8.7334 -1.2250 21 1 -4.1583 8.3762 -0.3463 22 1 -2.8497 10.2757 0.4021 23 6 0.9278 5.5722 1.7914 24 6 2.1651 2.1102 1.1963 25 8 1.8426 1.5053 2.3698 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.2673 1.4981 -2.1226 32 1 3.0800 3.8212 -2.1249 33 1 3.3173 5.0481 -0.0042 34 1 3.1127 3.4880 3.2702 35 1 3.5017 4.9716 2.3669 36 1 0.2993 3.0684 2.3985 37 1 0.9764 3.0729 4.0444 38 1 -1.4640 3.5453 4.0680 39 1 -0.5286 4.9375 4.6658 40 1 -1.6334 4.5918 1.8401 41 1 -2.2635 5.6980 3.0851 42 1 -3.5002 8.2833 2.6694 43 1 1.6629 6.3233 1.5021 44 1 0.6950 4.9425 0.9327 45 1 2.5577 0.9764 2.7491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826861265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:19 Heat of formation + Delta-G solvation = -52.463636 kcal Electronic energy + Delta-G solvation = -24294.699498 eV Core-core repulsion = 21082.413116 eV Total energy + Delta-G solvation = -3212.286382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42531 -39.38965 -37.51475 -36.05262 -34.82263 -33.54450 -31.66011 -30.96623 -29.87799 -27.21010 -26.87633 -24.88608 -23.91392 -23.07665 -22.40146 -21.41953 -20.20293 -19.09463 -18.44919 -17.08732 -17.00074 -16.61987 -16.33584 -15.95507 -15.61503 -15.09009 -14.82203 -14.72864 -14.66984 -14.32081 -14.12830 -13.97447 -13.67848 -13.35320 -13.10266 -12.88234 -12.85563 -12.70735 -12.55136 -12.52577 -12.36366 -12.04310 -11.80388 -11.72709 -11.65833 -11.44028 -11.16632 -10.86879 -10.66067 -10.38311 -9.61575 -9.41088 -9.08369 -8.08508 -6.22666 0.36664 0.38914 1.38310 1.39355 1.51155 2.41706 2.70306 3.18032 3.26168 3.37141 3.79666 3.87630 4.03481 4.23396 4.29038 4.31868 4.37369 4.45829 4.49984 4.55403 4.57937 4.67674 4.74135 4.79522 4.83620 4.97655 5.00937 5.02851 5.04491 5.13870 5.16312 5.18880 5.21093 5.37160 5.40722 5.50356 5.54215 5.57284 5.62861 5.64736 5.96930 5.99912 6.12045 6.21536 6.39224 6.47357 6.89789 6.93844 7.44897 8.96545 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.005118 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.222258 B = 5469.613476 C = 5804.185762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 C -0.124 4.124 4 C -0.112 4.112 5 C -0.136 4.136 6 C -0.112 4.112 7 C -0.151 4.151 8 C 0.100 3.900 9 N -0.536 5.536 10 C 0.084 3.916 11 C -0.115 4.115 12 C -0.099 4.099 13 C 0.052 3.948 14 H -0.004 1.004 15 C -0.533 4.533 16 H 0.048 0.952 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.278 1.278 23 C 0.091 3.909 24 C 0.113 3.887 25 O -0.493 6.493 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.027 0.973 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.012 0.988 41 H 0.057 0.943 42 H 0.260 0.740 43 H 0.051 0.949 44 H 0.010 0.990 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.419 -16.337 -4.027 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.124 4.124 4 C -0.131 4.131 5 C -0.154 4.154 6 C -0.131 4.131 7 C -0.153 4.153 8 C -0.027 4.027 9 N -0.258 5.258 10 C -0.044 4.044 11 C -0.153 4.153 12 C -0.138 4.138 13 C 0.033 3.967 14 H 0.014 0.986 15 C -0.571 4.571 16 H 0.066 0.934 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.779 3.221 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.203 1.203 23 C -0.036 4.036 24 C 0.068 3.932 25 O -0.305 6.305 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.046 0.954 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 11.804 -15.686 -3.567 19.952 hybrid contribution -0.478 0.347 -1.221 1.356 sum 11.326 -15.339 -4.788 19.659 Atomic orbital electron populations 1.21689 0.95350 1.02075 1.00951 1.20382 0.95528 0.91024 1.03673 1.20515 1.00965 0.98189 0.92761 1.21213 0.98824 0.95105 0.97926 1.21379 1.00506 0.95127 0.98367 1.21151 0.99830 0.99832 0.92264 1.21034 1.01090 0.95487 0.97711 1.21180 0.91744 0.97326 0.92486 1.62357 1.03922 1.21558 1.37932 1.21903 0.91864 0.91572 0.99062 1.21653 0.96766 0.98474 0.98396 1.21413 1.00610 0.96030 0.95711 1.18603 0.90970 0.92571 0.94576 0.98561 1.21511 1.09196 1.27810 0.98626 0.93355 1.25723 0.97215 0.97738 0.97808 1.70047 1.19097 1.42459 1.23956 0.85580 0.78197 0.78625 0.79725 1.19208 1.20603 1.20333 1.21846 0.96373 0.94439 0.90978 1.18121 0.98190 0.90994 0.85909 1.84959 1.42468 1.67836 1.35226 0.93768 0.90737 0.94425 0.89627 0.90009 0.83893 0.84334 0.85976 0.88642 0.90100 0.95445 0.89715 0.91937 0.93111 0.96896 0.92470 0.93062 0.93043 0.97130 0.74345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.89 71.98 0.71 -2.32 16 2 C -0.07 -1.26 5.79 29.85 0.17 -1.09 16 3 C -0.12 -2.93 5.15 -19.77 -0.10 -3.03 16 4 C -0.11 -2.58 9.68 22.26 0.22 -2.37 16 5 C -0.14 -3.38 10.04 22.28 0.22 -3.15 16 6 C -0.11 -3.16 8.55 22.25 0.19 -2.97 16 7 C -0.15 -4.34 3.94 -19.77 -0.08 -4.41 16 8 C 0.10 2.95 5.42 85.56 0.46 3.41 16 9 N -0.54 -20.33 4.86 -900.92 -4.38 -24.70 16 10 C 0.08 3.08 3.93 86.33 0.34 3.42 16 11 C -0.12 -4.85 6.09 30.65 0.19 -4.66 16 12 C -0.10 -5.14 5.02 30.67 0.15 -4.98 16 13 C 0.05 2.78 2.26 -11.49 -0.03 2.76 16 14 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 15 C -0.53 -30.93 8.56 25.60 0.22 -30.71 16 16 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 17 C 0.01 0.79 5.30 84.65 0.45 1.24 16 18 N -0.92 -55.04 11.35 21.45 0.24 -54.79 16 19 Si 0.95 45.12 29.54 68.60 2.03 47.15 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 C 0.09 4.12 3.81 86.33 0.33 4.44 16 24 C 0.11 2.95 5.54 22.51 0.12 3.07 16 25 O -0.49 -11.05 9.06 -92.44 -0.84 -11.89 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 0.97 8.14 -2.38 -0.02 0.96 16 29 H 0.09 1.24 8.05 -2.39 -0.02 1.22 16 30 H 0.08 1.27 7.69 -2.38 -0.02 1.26 16 31 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.10 2.37 7.60 -2.39 -0.02 2.35 16 35 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 36 H 0.03 1.08 5.76 -2.38 -0.01 1.07 16 37 H 0.08 2.70 7.57 -2.39 -0.02 2.68 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 3.29 6.15 -2.39 -0.01 3.28 16 42 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 43 H 0.05 2.29 8.12 -2.39 -0.02 2.27 16 44 H 0.01 0.50 6.73 -2.39 -0.02 0.48 16 45 H 0.40 4.97 9.06 -74.06 -0.67 4.29 16 Total: -1.00 -67.84 347.12 0.92 -66.91 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.29 Total: 18.67 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 3.57 Total: -41.35 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -4.13 Total: -79.50 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.84 Total: -11.89 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -67.84 0.92 -66.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.449 kcal (2) G-P(sol) polarization free energy of solvation -67.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds