Wall clock time and date at job start Tue Mar 31 2020 06:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46822 * 2 1 4 4 C 1.53004 * 109.47327 * 240.00400 * 2 1 3 5 5 C 1.50701 * 109.47157 * 59.99509 * 4 2 1 6 6 H 1.07997 * 119.99954 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99605 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00226 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99729 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47083 * 59.99806 * 9 7 5 11 11 H 1.48493 * 109.47028 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46980 * 299.99943 * 9 7 5 13 13 C 1.52998 * 109.47424 * 120.00007 * 2 1 3 14 14 N 1.46901 * 109.46729 * 300.00366 * 13 2 1 15 15 C 1.46903 * 110.99629 * 185.87011 * 14 13 2 16 16 H 1.08999 * 110.26651 * 319.12832 * 15 14 13 17 17 C 1.54349 * 110.30915 * 81.21317 * 15 14 13 18 18 C 1.54342 * 102.37732 * 145.25258 * 17 15 14 19 19 C 1.51372 * 105.17204 * 333.66429 * 18 17 15 20 20 C 1.38548 * 130.35894 * 197.16501 * 19 18 17 21 21 C 1.38134 * 120.33414 * 180.28221 * 20 19 18 22 22 C 1.38156 * 119.99299 * 359.44949 * 21 20 19 23 23 C 1.38602 * 119.87379 * 0.56653 * 22 21 20 24 24 O 1.35908 * 119.95006 * 179.68896 * 23 22 21 25 25 C 1.38121 * 109.76185 * 17.18731 * 19 18 17 26 26 H 1.08994 * 109.47154 * 300.00015 * 1 2 3 27 27 H 1.09001 * 109.46725 * 60.00039 * 1 2 3 28 28 H 1.08999 * 109.46506 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47410 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47438 * 299.99524 * 3 2 1 31 31 H 1.08994 * 109.47269 * 60.00055 * 3 2 1 32 32 H 1.08995 * 109.46927 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.46521 * 299.99891 * 4 2 1 34 34 H 0.97002 * 120.00069 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47166 * 180.02562 * 13 2 1 36 36 H 1.09004 * 109.47039 * 59.99732 * 13 2 1 37 37 H 1.00895 * 111.00257 * 61.91698 * 14 13 2 38 38 H 1.08998 * 110.82403 * 27.02887 * 17 15 14 39 39 H 1.09002 * 110.82009 * 263.47423 * 17 15 14 40 40 H 1.08997 * 110.29818 * 214.73869 * 18 17 15 41 41 H 1.09000 * 110.38622 * 92.63737 * 18 17 15 42 42 H 1.07998 * 119.83300 * 0.02562 * 20 19 18 43 43 H 1.07997 * 119.99508 * 179.72262 * 21 20 19 44 44 H 1.08003 * 120.06119 * 180.27183 * 22 21 20 45 45 H 0.96694 * 113.99524 * 270.02304 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9171 0.8675 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 2.6266 -1.5513 -3.8527 9 14 1.2483 0.3989 -5.2572 10 1 1.7442 1.7987 -5.2572 11 1 1.7433 -0.3012 -6.4697 12 1 -0.2367 0.3999 -5.2571 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4486 15 6 2.1326 -0.6091 3.6661 16 1 2.1648 -1.6958 3.5883 17 6 3.5504 -0.0467 3.9026 18 6 3.6245 0.0269 5.4424 19 6 2.1897 0.1743 5.9016 20 6 1.6754 0.5948 7.1174 21 6 0.3095 0.6458 7.3170 22 6 -0.5513 0.2872 6.2976 23 6 -0.0414 -0.1345 5.0797 24 8 -0.8867 -0.4936 4.0780 25 6 1.3331 -0.1910 4.8815 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1301 -0.7207 -1.2495 33 1 1.6768 -1.7489 -1.2493 34 1 2.8604 -1.8831 -4.7337 35 1 3.1301 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.5423 -0.0425 2.4878 38 1 3.6524 0.9450 3.4618 39 1 4.3071 -0.7260 3.5101 40 1 4.2114 0.8917 5.7519 41 1 4.0587 -0.8879 5.8458 42 1 2.3459 0.8803 7.9145 43 1 -0.0854 0.9702 8.2684 44 1 -1.6195 0.3309 6.4510 45 1 -1.1235 -1.4311 4.0804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834803492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:58 Heat of formation + Delta-G solvation = -36.112082 kcal Electronic energy + Delta-G solvation = -23353.207027 eV Core-core repulsion = 20141.629702 eV Total energy + Delta-G solvation = -3211.577325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61646 -37.72406 -37.22481 -35.64383 -33.10622 -31.88380 -29.90478 -29.06435 -27.08164 -26.28791 -26.21859 -24.50055 -22.77789 -22.25997 -21.31821 -20.28217 -18.16110 -17.77323 -16.23440 -16.14355 -15.93861 -15.76488 -15.39006 -14.54798 -14.45763 -13.89149 -13.74231 -13.53730 -13.22715 -12.97502 -12.53457 -12.47045 -12.13777 -11.93553 -11.75140 -11.66775 -11.50779 -11.26848 -10.98580 -10.85145 -10.77125 -10.72018 -10.51908 -10.40964 -10.16449 -10.06453 -9.60032 -8.97543 -8.79492 -8.77926 -8.71363 -8.27054 -7.93716 -5.91928 -3.91614 1.09282 1.14866 3.37993 3.42138 3.43000 3.44979 4.03284 4.30650 4.43227 4.51199 4.65678 4.81887 4.96987 5.04202 5.21773 5.33350 5.36059 5.43842 5.54390 5.63492 5.77530 5.81432 5.84603 5.90310 6.02283 6.09385 6.20060 6.23132 6.26308 6.35186 6.42470 6.45448 6.63113 6.65296 6.77428 6.89087 6.92315 7.29348 7.32725 7.34783 7.49142 7.54133 7.75191 7.85778 7.93565 8.08909 8.54174 9.13677 9.70865 11.19792 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030464 B = 0.003414 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.899415 B = 8199.619039 C = 8694.162990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.056 4.056 3 C -0.115 4.115 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.069 3.931 14 N -0.678 5.678 15 C 0.128 3.872 16 H 0.052 0.948 17 C -0.111 4.111 18 C -0.082 4.082 19 C -0.074 4.074 20 C -0.120 4.120 21 C -0.106 4.106 22 C -0.149 4.149 23 C 0.123 3.877 24 O -0.494 6.494 25 C -0.114 4.114 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.014 0.986 33 H 0.012 0.988 34 H 0.259 0.741 35 H 0.064 0.936 36 H 0.020 0.980 37 H 0.352 0.648 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 1.218 23.160 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.056 4.056 3 C -0.172 4.172 4 C -0.003 4.003 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.059 4.059 14 N -0.313 5.313 15 C 0.018 3.982 16 H 0.069 0.931 17 C -0.149 4.149 18 C -0.120 4.120 19 C -0.075 4.075 20 C -0.138 4.138 21 C -0.124 4.124 22 C -0.168 4.168 23 C 0.079 3.921 24 O -0.304 6.304 25 C -0.115 4.115 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.174 0.826 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.667 2.192 22.812 22.978 hybrid contribution -0.912 -0.999 -0.761 1.552 sum -2.579 1.194 22.051 22.234 Atomic orbital electron populations 1.21747 0.96023 1.00234 1.00512 1.20597 0.94811 0.96045 0.94188 1.21587 0.99568 0.95926 1.00166 1.19119 0.96014 0.94929 0.90247 1.21222 1.30695 1.11841 0.90640 0.92341 1.25010 0.95443 0.95132 0.99009 1.69957 1.37372 1.23256 1.23319 0.86731 0.79156 0.79845 0.82701 1.20318 1.21483 1.20362 1.22141 0.99634 0.94452 0.89697 1.60732 1.14112 1.56314 1.00140 1.20949 0.93311 0.96274 0.87618 0.93088 1.22413 0.95527 1.03001 0.93926 1.21093 0.92307 1.02322 0.96231 1.20508 0.96169 0.97505 0.93310 1.20636 0.95194 1.01449 0.96561 1.20887 0.92928 0.99843 0.98724 1.21290 1.00423 1.02723 0.92352 1.18097 0.87059 0.99499 0.87495 1.84832 1.65238 1.31027 1.49324 1.20987 0.92606 1.01053 0.96888 0.94481 0.91951 0.94300 0.94324 0.92823 0.93827 0.96770 0.97013 0.93168 0.91708 0.96135 0.82551 0.89414 0.90770 0.90470 0.90232 0.86066 0.85586 0.85352 0.75624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 7.89 37.16 0.29 -2.23 16 2 C -0.06 -1.16 0.60 -154.50 -0.09 -1.25 16 3 C -0.12 -2.34 8.06 37.16 0.30 -2.04 16 4 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -14.09 7.65 -34.44 -0.26 -14.36 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.07 1.24 4.48 -3.82 -0.02 1.22 16 14 N -0.68 -10.65 5.41 -106.85 -0.58 -11.22 16 15 C 0.13 1.72 3.14 -67.83 -0.21 1.50 16 16 H 0.05 0.68 7.98 -51.93 -0.41 0.27 16 17 C -0.11 -1.32 6.35 -25.32 -0.16 -1.48 16 18 C -0.08 -0.81 6.77 -26.85 -0.18 -0.99 16 19 C -0.07 -0.83 6.14 -104.22 -0.64 -1.47 16 20 C -0.12 -1.16 10.04 -39.51 -0.40 -1.56 16 21 C -0.11 -0.97 10.04 -39.65 -0.40 -1.37 16 22 C -0.15 -1.54 9.98 -39.48 -0.39 -1.93 16 23 C 0.12 1.48 6.62 -39.17 -0.26 1.22 16 24 O -0.49 -5.69 11.54 -19.45 -0.22 -5.92 16 25 C -0.11 -1.44 5.76 -104.06 -0.60 -2.04 16 26 H 0.04 0.66 6.71 -51.93 -0.35 0.31 16 27 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.16 6.62 -51.93 -0.34 0.81 16 31 H 0.04 0.82 7.60 -51.93 -0.39 0.43 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.06 1.17 7.80 -51.93 -0.41 0.77 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.35 5.62 4.73 -39.29 -0.19 5.43 16 38 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 45 H 0.39 2.83 9.06 45.56 0.41 3.24 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -31.47 352.61 -9.53 -41.00 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.53 Total: 4.92 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -3.23 Total: -24.54 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.16 Total: -37.67 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.22 Total: -5.92 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.47 -9.53 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834803492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.888 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds