Wall clock time and date at job start Tue Mar 31 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46822 * 2 1 4 4 C 1.53004 * 109.47327 * 240.00400 * 2 1 3 5 5 C 1.50701 * 109.47157 * 59.99509 * 4 2 1 6 6 H 1.07997 * 119.99954 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99605 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00226 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99729 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47083 * 59.99806 * 9 7 5 11 11 H 1.48493 * 109.47028 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46980 * 299.99943 * 9 7 5 13 13 C 1.52998 * 109.47424 * 120.00007 * 2 1 3 14 14 N 1.46901 * 109.46729 * 300.00366 * 13 2 1 15 15 C 1.46903 * 110.99629 * 185.87011 * 14 13 2 16 16 H 1.08999 * 110.26651 * 319.12832 * 15 14 13 17 17 C 1.54349 * 110.30915 * 81.21317 * 15 14 13 18 18 C 1.54342 * 102.37732 * 145.25258 * 17 15 14 19 19 C 1.51372 * 105.17204 * 333.66429 * 18 17 15 20 20 C 1.38548 * 130.35894 * 197.16501 * 19 18 17 21 21 C 1.38134 * 120.33414 * 180.28221 * 20 19 18 22 22 C 1.38156 * 119.99299 * 359.44949 * 21 20 19 23 23 C 1.38602 * 119.87379 * 0.56653 * 22 21 20 24 24 O 1.35908 * 119.95006 * 179.68896 * 23 22 21 25 25 C 1.38121 * 109.76185 * 17.18731 * 19 18 17 26 26 H 1.08994 * 109.47154 * 300.00015 * 1 2 3 27 27 H 1.09001 * 109.46725 * 60.00039 * 1 2 3 28 28 H 1.08999 * 109.46506 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47410 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47438 * 299.99524 * 3 2 1 31 31 H 1.08994 * 109.47269 * 60.00055 * 3 2 1 32 32 H 1.08995 * 109.46927 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.46521 * 299.99891 * 4 2 1 34 34 H 0.97002 * 120.00069 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47166 * 180.02562 * 13 2 1 36 36 H 1.09004 * 109.47039 * 59.99732 * 13 2 1 37 37 H 1.00895 * 111.00257 * 61.91698 * 14 13 2 38 38 H 1.08998 * 110.82403 * 27.02887 * 17 15 14 39 39 H 1.09002 * 110.82009 * 263.47423 * 17 15 14 40 40 H 1.08997 * 110.29818 * 214.73869 * 18 17 15 41 41 H 1.09000 * 110.38622 * 92.63737 * 18 17 15 42 42 H 1.07998 * 119.83300 * 0.02562 * 20 19 18 43 43 H 1.07997 * 119.99508 * 179.72262 * 21 20 19 44 44 H 1.08003 * 120.06119 * 180.27183 * 22 21 20 45 45 H 0.96694 * 113.99524 * 270.02304 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9171 0.8675 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 2.6266 -1.5513 -3.8527 9 14 1.2483 0.3989 -5.2572 10 1 1.7442 1.7987 -5.2572 11 1 1.7433 -0.3012 -6.4697 12 1 -0.2367 0.3999 -5.2571 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4486 15 6 2.1326 -0.6091 3.6661 16 1 2.1648 -1.6958 3.5883 17 6 3.5504 -0.0467 3.9026 18 6 3.6245 0.0269 5.4424 19 6 2.1897 0.1743 5.9016 20 6 1.6754 0.5948 7.1174 21 6 0.3095 0.6458 7.3170 22 6 -0.5513 0.2872 6.2976 23 6 -0.0414 -0.1345 5.0797 24 8 -0.8867 -0.4936 4.0780 25 6 1.3331 -0.1910 4.8815 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1301 -0.7207 -1.2495 33 1 1.6768 -1.7489 -1.2493 34 1 2.8604 -1.8831 -4.7337 35 1 3.1301 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.5423 -0.0425 2.4878 38 1 3.6524 0.9450 3.4618 39 1 4.3071 -0.7260 3.5101 40 1 4.2114 0.8917 5.7519 41 1 4.0587 -0.8879 5.8458 42 1 2.3459 0.8803 7.9145 43 1 -0.0854 0.9702 8.2684 44 1 -1.6195 0.3309 6.4510 45 1 -1.1235 -1.4311 4.0804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834803492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:57 Heat of formation + Delta-G solvation = -55.255616 kcal Electronic energy + Delta-G solvation = -23354.037153 eV Core-core repulsion = 20141.629702 eV Total energy + Delta-G solvation = -3212.407451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46104 -39.10565 -38.21827 -36.72222 -34.79503 -33.50805 -30.80124 -29.89124 -29.00153 -27.89669 -27.55335 -26.01388 -24.17778 -23.48511 -22.11093 -21.26382 -19.54428 -18.90783 -18.32399 -17.17372 -16.85632 -16.76780 -16.49868 -16.27399 -15.56008 -15.31651 -15.02308 -14.64465 -14.44078 -14.26272 -14.09418 -13.87246 -13.41534 -13.31152 -12.96106 -12.79086 -12.75627 -12.62356 -12.52799 -12.39026 -12.25765 -12.14293 -12.05220 -11.85421 -11.73512 -11.38917 -11.35113 -10.85537 -10.73046 -10.49528 -9.71940 -9.47657 -9.15202 -8.13494 -6.20466 0.32140 0.36746 1.40761 1.43219 1.50534 2.44155 2.67188 3.20065 3.20204 3.44707 3.50557 3.60838 4.04573 4.13546 4.15811 4.26588 4.30101 4.32674 4.40178 4.52315 4.62474 4.69826 4.79370 4.79997 4.89193 4.95604 5.02337 5.07787 5.09475 5.17822 5.19752 5.21774 5.31780 5.44289 5.50094 5.51242 5.53160 5.57148 5.63772 5.67403 5.87074 5.92759 5.94444 6.15242 6.38519 6.59304 6.82008 6.93959 7.46600 8.98682 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030464 B = 0.003414 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.899415 B = 8199.619039 C = 8694.162990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.053 4.053 3 C -0.105 4.105 4 C 0.043 3.957 5 C -0.516 4.516 6 H 0.064 0.936 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.083 3.917 14 N -0.677 5.677 15 C 0.126 3.874 16 H 0.047 0.953 17 C -0.112 4.112 18 C -0.075 4.075 19 C -0.083 4.083 20 C -0.124 4.124 21 C -0.100 4.100 22 C -0.158 4.158 23 C 0.108 3.892 24 O -0.509 6.509 25 C -0.141 4.141 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.060 0.940 32 H -0.015 1.015 33 H -0.016 1.016 34 H 0.260 0.740 35 H 0.059 0.941 36 H 0.015 0.985 37 H 0.351 0.649 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.147 0.853 43 H 0.156 0.844 44 H 0.143 0.857 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 2.451 25.132 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.054 4.054 3 C -0.162 4.162 4 C 0.005 3.995 5 C -0.554 4.554 6 H 0.082 0.918 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.046 4.046 14 N -0.312 5.312 15 C 0.017 3.983 16 H 0.065 0.935 17 C -0.150 4.150 18 C -0.112 4.112 19 C -0.084 4.084 20 C -0.141 4.141 21 C -0.118 4.118 22 C -0.176 4.176 23 C 0.064 3.936 24 O -0.322 6.322 25 C -0.142 4.142 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.004 0.996 33 H 0.002 0.998 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.033 0.967 37 H 0.173 0.827 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.165 0.835 43 H 0.174 0.826 44 H 0.161 0.839 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -2.387 3.426 24.803 25.152 hybrid contribution -0.702 -1.409 -1.298 2.040 sum -3.088 2.017 23.505 23.792 Atomic orbital electron populations 1.21634 0.94965 1.00235 1.00730 1.20473 0.95594 0.96033 0.93256 1.21473 0.99153 0.95398 1.00173 1.18981 0.94080 0.93913 0.92519 1.21588 1.30369 1.11925 0.91537 0.91805 1.25904 0.95675 0.95898 1.02495 1.70098 1.38775 1.24890 1.24102 0.85639 0.78935 0.78796 0.78530 1.19383 1.21201 1.19325 1.21842 0.99182 0.93910 0.89686 1.60691 1.14070 1.56163 1.00234 1.21011 0.94264 0.96049 0.86989 0.93529 1.22396 0.94757 1.01993 0.95868 1.21073 0.92114 1.03766 0.94260 1.20754 0.96446 0.97494 0.93687 1.20973 0.95949 1.00656 0.96568 1.21290 0.92711 0.98301 0.99516 1.21541 1.01516 1.02530 0.92023 1.18335 0.86993 1.00090 0.88200 1.84773 1.65215 1.32504 1.49662 1.21005 0.93237 1.03087 0.96910 0.92244 0.93566 0.94442 0.94855 0.94336 0.92058 0.99615 0.99763 0.93126 0.92205 0.96692 0.82688 0.90983 0.90425 0.89028 0.88646 0.83531 0.82625 0.83929 0.73949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.65 7.89 71.98 0.57 -4.08 16 2 C -0.05 -2.23 0.60 -52.18 -0.03 -2.27 16 3 C -0.10 -4.25 8.06 71.98 0.58 -3.67 16 4 C 0.04 2.27 4.04 29.85 0.12 2.39 16 5 C -0.52 -29.29 7.65 25.60 0.20 -29.09 16 6 H 0.06 3.49 5.68 -2.91 -0.02 3.48 16 7 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 8 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 9 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 C 0.08 3.02 4.48 86.30 0.39 3.40 16 14 N -0.68 -21.06 5.41 -491.96 -2.66 -23.72 16 15 C 0.13 3.33 3.14 44.84 0.14 3.47 16 16 H 0.05 1.25 7.98 -2.39 -0.02 1.23 16 17 C -0.11 -2.60 6.35 31.51 0.20 -2.40 16 18 C -0.08 -1.33 6.77 30.52 0.21 -1.12 16 19 C -0.08 -1.70 6.14 -19.60 -0.12 -1.82 16 20 C -0.12 -2.01 10.04 22.32 0.22 -1.79 16 21 C -0.10 -1.53 10.04 22.23 0.22 -1.30 16 22 C -0.16 -2.91 9.98 22.34 0.22 -2.68 16 23 C 0.11 2.47 6.62 22.54 0.15 2.62 16 24 O -0.51 -11.33 11.54 -92.52 -1.07 -12.40 16 25 C -0.14 -3.42 5.76 -19.50 -0.11 -3.53 16 26 H 0.06 2.06 6.71 -2.39 -0.02 2.04 16 27 H 0.05 1.94 6.62 -2.39 -0.02 1.93 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.65 6.62 -2.39 -0.02 1.63 16 31 H 0.06 2.26 7.60 -2.39 -0.02 2.24 16 32 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 35 H 0.06 2.22 7.80 -2.39 -0.02 2.20 16 36 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.35 10.99 4.73 -89.70 -0.42 10.57 16 38 H 0.07 1.89 8.09 -2.39 -0.02 1.87 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 45 H 0.40 5.67 9.06 -74.06 -0.67 5.00 16 Total: -1.00 -68.21 352.61 1.89 -66.32 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.11 Total: 21.88 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 3.42 Total: -41.58 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -2.38 Total: -81.44 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.07 Total: -12.40 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.21 1.89 -66.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834803492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.065 kcal (2) G-P(sol) polarization free energy of solvation -68.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds