Wall clock time and date at job start Tue Mar 31 2020 06:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.50696 * 109.46730 * 179.97438 * 3 2 1 5 5 C 1.38238 * 119.99767 * 90.00546 * 4 3 2 6 6 C 1.38235 * 120.00108 * 179.97438 * 5 4 3 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.52996 * 109.47210 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47094 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99990 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99575 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99588 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47011 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00003 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99842 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00027 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00185 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47020 * 90.00322 * 19 17 15 21 21 H 1.48498 * 109.47145 * 210.00267 * 19 17 15 22 22 H 1.48499 * 109.46942 * 330.00525 * 19 17 15 23 23 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 24 24 C 1.38234 * 120.00185 * 270.01952 * 4 3 2 25 25 H 1.09000 * 109.46823 * 60.00646 * 1 2 3 26 26 H 1.08999 * 109.46740 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47490 * 300.00044 * 1 2 3 28 28 H 1.09004 * 109.47260 * 239.99759 * 2 1 3 29 29 H 1.09005 * 109.46739 * 119.99839 * 2 1 3 30 30 H 1.09000 * 109.46955 * 60.00000 * 3 2 1 31 31 H 1.09000 * 109.46884 * 299.99316 * 3 2 1 32 32 H 1.08000 * 120.00559 * 359.97438 * 5 4 3 33 33 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 35 35 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 36 36 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 37 37 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 38 38 H 1.08997 * 109.47037 * 300.00424 * 10 9 8 39 39 H 1.09000 * 109.46839 * 60.00324 * 10 9 8 40 40 H 0.96992 * 120.00688 * 0.02562 * 13 11 10 41 41 H 1.09008 * 109.47050 * 300.00154 * 14 13 11 42 42 H 1.09003 * 109.46830 * 59.99827 * 14 13 11 43 43 H 0.97000 * 120.00429 * 179.97438 * 18 17 15 44 44 H 1.08004 * 119.99934 * 179.72684 * 23 7 6 45 45 H 1.07999 * 119.99990 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2386 1.4424 -1.1963 6 6 5.6209 1.4429 -1.1958 7 6 6.3116 1.4430 0.0017 8 6 7.8187 1.4429 0.0023 9 6 8.3287 2.8854 0.0023 10 6 9.8587 2.8854 0.0035 11 6 10.3610 4.3063 0.0030 12 8 9.5729 5.2281 0.0022 13 7 11.6862 4.5525 0.0033 14 6 12.1745 5.9337 0.0033 15 6 13.6815 5.9337 0.0031 16 1 14.2214 4.9984 0.0034 17 6 14.3708 7.1277 0.0036 18 7 15.6860 7.1278 0.0039 19 14 13.4369 8.7455 0.0039 20 1 13.1891 9.1738 1.4041 21 1 14.2396 9.7806 -0.6957 22 1 12.1395 8.5681 -0.6964 23 6 5.6200 1.4372 1.1986 24 6 4.2377 1.4422 1.1980 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8901 32 1 3.6990 1.4420 -2.1318 33 1 6.1613 1.4424 -2.1309 34 1 8.1816 0.9292 0.8925 35 1 8.1824 0.9291 -0.8875 36 1 7.9657 3.3992 -0.8878 37 1 7.9650 3.3994 0.8922 38 1 10.2213 2.3717 0.8939 39 1 10.2227 2.3714 -0.8861 40 1 12.3165 3.8153 0.0035 41 1 11.8114 6.4475 -0.8869 42 1 11.8109 6.4476 0.8932 43 1 16.1710 7.9678 0.0039 44 1 6.1597 1.4328 2.1341 45 1 3.6973 1.4417 2.1331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843868266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:08 Heat of formation + Delta-G solvation = -57.699738 kcal Electronic energy + Delta-G solvation = -21220.296766 eV Core-core repulsion = 18007.783330 eV Total energy + Delta-G solvation = -3212.513436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.78693 -38.95040 -36.09711 -34.48306 -34.04694 -32.35348 -31.37340 -31.06171 -28.76222 -27.48861 -25.37148 -22.88146 -22.87496 -21.92791 -21.29122 -20.50634 -19.73692 -17.28635 -16.40099 -16.17037 -15.83058 -15.45056 -15.33722 -15.10153 -14.75142 -14.12086 -13.97560 -13.80086 -13.72819 -13.49733 -13.13185 -12.83959 -12.55742 -12.48837 -12.33432 -12.25281 -11.75856 -11.65530 -11.46335 -11.32389 -11.23869 -11.00859 -10.94804 -10.84045 -10.75541 -10.60811 -9.96848 -9.49152 -9.17069 -9.04942 -8.77455 -8.60766 -8.12490 -6.21407 -4.23556 1.18716 1.27491 3.25643 3.29443 3.33565 3.42470 3.57233 4.04543 4.33781 4.44292 4.52662 4.69788 4.73018 4.74782 4.87936 4.99747 5.08885 5.13822 5.17058 5.18732 5.25858 5.33787 5.41686 5.42179 5.46730 5.57475 5.60544 5.67590 5.72260 5.76247 5.82439 5.91327 5.93746 5.99293 6.17660 6.29358 6.40668 6.45854 6.54899 6.82772 6.88473 7.08354 7.25118 7.40983 8.14776 8.53990 8.75725 8.97278 9.39124 10.90549 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041681 B = 0.002051 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.601526 B =13646.135168 C =13981.422679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.080 4.080 4 C -0.091 4.091 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.079 4.079 8 C -0.082 4.082 9 C -0.096 4.096 10 C -0.141 4.141 11 C 0.497 3.503 12 O -0.561 6.561 13 N -0.708 5.708 14 C 0.219 3.781 15 C -0.544 4.544 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.261 1.261 23 C -0.114 4.114 24 C -0.116 4.116 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.396 0.604 41 H 0.024 0.976 42 H 0.020 0.980 43 H 0.267 0.733 44 H 0.121 0.879 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.652 -16.825 -0.030 30.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.117 4.117 4 C -0.091 4.091 5 C -0.134 4.134 6 C -0.132 4.132 7 C -0.079 4.079 8 C -0.120 4.120 9 C -0.134 4.134 10 C -0.181 4.181 11 C 0.283 3.717 12 O -0.440 6.440 13 N -0.356 5.356 14 C 0.097 3.903 15 C -0.582 4.582 16 H 0.097 0.903 17 C -0.126 4.126 18 N -0.530 5.530 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.132 4.132 24 C -0.134 4.134 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.230 0.770 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.139 0.861 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -26.019 -16.020 -0.034 30.555 hybrid contribution 0.135 0.588 0.025 0.603 sum -25.884 -15.432 -0.008 30.135 Atomic orbital electron populations 1.21795 0.95741 1.01672 1.01859 1.21513 0.95577 0.96168 1.02357 1.20623 0.91053 0.97263 1.02811 1.19849 0.95497 1.00523 0.93274 1.20993 0.94157 1.00856 0.97418 1.21058 0.94097 1.00331 0.97724 1.19915 0.95826 0.99042 0.93130 1.20677 0.90663 0.97724 1.02915 1.21282 0.93238 0.94947 1.03896 1.21684 0.97276 0.95160 1.04009 1.20620 0.83014 0.91104 0.76992 1.90647 1.55589 1.46659 1.51140 1.46219 1.05900 1.10938 1.72568 1.19480 0.95196 0.78936 0.96699 1.21109 0.88586 0.95220 1.53260 0.90262 1.24801 0.94791 0.99181 0.93861 1.69881 1.06207 1.27415 1.49498 0.86812 0.80574 0.83225 0.79052 1.19853 1.20883 1.18530 1.21057 0.94091 1.00341 0.97725 1.20993 0.94162 1.00855 0.97412 0.92705 0.92712 0.92698 0.91901 0.91903 0.91132 0.91129 0.86358 0.86074 0.90926 0.90924 0.91141 0.91148 0.89270 0.89278 0.77020 0.95792 0.96248 0.92273 0.86075 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 3 C -0.08 -0.57 5.34 -27.89 -0.15 -0.72 16 4 C -0.09 -0.84 5.13 -104.63 -0.54 -1.38 16 5 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 6 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 7 C -0.08 -0.83 5.13 -104.62 -0.54 -1.37 16 8 C -0.08 -0.80 5.35 -27.88 -0.15 -0.95 16 9 C -0.10 -1.20 4.49 -26.73 -0.12 -1.32 16 10 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 11 C 0.50 9.44 7.83 -10.98 -0.09 9.36 16 12 O -0.56 -12.92 15.98 5.56 0.09 -12.83 16 13 N -0.71 -14.44 5.55 -61.46 -0.34 -14.78 16 14 C 0.22 5.48 4.50 -5.19 -0.02 5.46 16 15 C -0.54 -15.07 9.83 -34.44 -0.34 -15.41 16 16 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 19 Si 0.88 21.67 27.47 -169.99 -4.67 17.01 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 23 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 24 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.07 0.99 8.10 -51.92 -0.42 0.57 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.40 7.04 8.32 -40.82 -0.34 6.70 16 41 H 0.02 0.64 7.20 -51.92 -0.37 0.26 16 42 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -32.69 374.12 -9.89 -42.58 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.86 Total: 1.87 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.52 Total: -13.62 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.43 Total: -40.64 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.69 -9.89 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843868266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.116 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds