Wall clock time and date at job start Tue Mar 31 2020 06:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.50696 * 109.46730 * 179.97438 * 3 2 1 5 5 C 1.38238 * 119.99767 * 90.00546 * 4 3 2 6 6 C 1.38235 * 120.00108 * 179.97438 * 5 4 3 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47116 * 89.99867 * 8 7 6 10 10 C 1.52996 * 109.47210 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47094 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99990 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99575 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99588 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47011 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00003 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99842 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00027 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00185 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47020 * 90.00322 * 19 17 15 21 21 H 1.48498 * 109.47145 * 210.00267 * 19 17 15 22 22 H 1.48499 * 109.46942 * 330.00525 * 19 17 15 23 23 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 24 24 C 1.38234 * 120.00185 * 270.01952 * 4 3 2 25 25 H 1.09000 * 109.46823 * 60.00646 * 1 2 3 26 26 H 1.08999 * 109.46740 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47490 * 300.00044 * 1 2 3 28 28 H 1.09004 * 109.47260 * 239.99759 * 2 1 3 29 29 H 1.09005 * 109.46739 * 119.99839 * 2 1 3 30 30 H 1.09000 * 109.46955 * 60.00000 * 3 2 1 31 31 H 1.09000 * 109.46884 * 299.99316 * 3 2 1 32 32 H 1.08000 * 120.00559 * 359.97438 * 5 4 3 33 33 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 35 35 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 36 36 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 37 37 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 38 38 H 1.08997 * 109.47037 * 300.00424 * 10 9 8 39 39 H 1.09000 * 109.46839 * 60.00324 * 10 9 8 40 40 H 0.96992 * 120.00688 * 0.02562 * 13 11 10 41 41 H 1.09008 * 109.47050 * 300.00154 * 14 13 11 42 42 H 1.09003 * 109.46830 * 59.99827 * 14 13 11 43 43 H 0.97000 * 120.00429 * 179.97438 * 18 17 15 44 44 H 1.08004 * 119.99934 * 179.72684 * 23 7 6 45 45 H 1.07999 * 119.99990 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2386 1.4424 -1.1963 6 6 5.6209 1.4429 -1.1958 7 6 6.3116 1.4430 0.0017 8 6 7.8187 1.4429 0.0023 9 6 8.3287 2.8854 0.0023 10 6 9.8587 2.8854 0.0035 11 6 10.3610 4.3063 0.0030 12 8 9.5729 5.2281 0.0022 13 7 11.6862 4.5525 0.0033 14 6 12.1745 5.9337 0.0033 15 6 13.6815 5.9337 0.0031 16 1 14.2214 4.9984 0.0034 17 6 14.3708 7.1277 0.0036 18 7 15.6860 7.1278 0.0039 19 14 13.4369 8.7455 0.0039 20 1 13.1891 9.1738 1.4041 21 1 14.2396 9.7806 -0.6957 22 1 12.1395 8.5681 -0.6964 23 6 5.6200 1.4372 1.1986 24 6 4.2377 1.4422 1.1980 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8901 32 1 3.6990 1.4420 -2.1318 33 1 6.1613 1.4424 -2.1309 34 1 8.1816 0.9292 0.8925 35 1 8.1824 0.9291 -0.8875 36 1 7.9657 3.3992 -0.8878 37 1 7.9650 3.3994 0.8922 38 1 10.2213 2.3717 0.8939 39 1 10.2227 2.3714 -0.8861 40 1 12.3165 3.8153 0.0035 41 1 11.8114 6.4475 -0.8869 42 1 11.8109 6.4476 0.8932 43 1 16.1710 7.9678 0.0039 44 1 6.1597 1.4328 2.1341 45 1 3.6973 1.4417 2.1331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843868266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:07 Heat of formation + Delta-G solvation = -75.949750 kcal Electronic energy + Delta-G solvation = -21221.088146 eV Core-core repulsion = 18007.783330 eV Total energy + Delta-G solvation = -3213.304816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69289 -40.31695 -36.83943 -36.15585 -35.01896 -34.40351 -32.22653 -31.76878 -30.25485 -28.68200 -26.25305 -24.29199 -23.59346 -23.03907 -22.22722 -21.31128 -21.21344 -19.14015 -17.74618 -17.01577 -17.00537 -16.92850 -16.48275 -16.11203 -15.78071 -15.52945 -15.01290 -14.81074 -14.57691 -14.43519 -14.30019 -14.24358 -14.00451 -13.67011 -13.25297 -13.04676 -13.01188 -12.75149 -12.58883 -12.44855 -12.25478 -11.95959 -11.94857 -11.93404 -11.66838 -11.56164 -11.54320 -11.45950 -10.93292 -10.77930 -9.91757 -9.77700 -9.33566 -8.41438 -6.48337 0.45973 0.54644 1.30885 1.33266 1.45893 1.77365 2.26597 2.51918 2.87776 2.93846 3.78564 3.90731 3.90750 3.97205 4.09140 4.17936 4.24099 4.27288 4.36318 4.51398 4.55561 4.64324 4.65768 4.72804 4.75712 4.85168 4.87237 4.90201 4.93511 5.01325 5.01557 5.15339 5.15726 5.24537 5.25494 5.31145 5.33016 5.43467 5.45424 5.55431 5.57816 5.77062 5.80011 6.08147 6.18470 6.52937 6.87204 7.14950 7.45061 8.73226 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041681 B = 0.002051 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.601526 B =13646.135168 C =13981.422679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.078 4.078 4 C -0.097 4.097 5 C -0.127 4.127 6 C -0.127 4.127 7 C -0.096 4.096 8 C -0.072 4.072 9 C -0.089 4.089 10 C -0.127 4.127 11 C 0.493 3.507 12 O -0.604 6.604 13 N -0.708 5.708 14 C 0.230 3.770 15 C -0.548 4.548 16 H 0.061 0.939 17 C 0.027 3.973 18 N -0.930 5.930 19 Si 0.937 3.063 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.263 1.263 23 C -0.127 4.127 24 C -0.127 4.127 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.410 0.590 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.273 0.727 44 H 0.130 0.870 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.004 -17.831 0.014 32.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.115 4.115 4 C -0.097 4.097 5 C -0.145 4.145 6 C -0.145 4.145 7 C -0.096 4.096 8 C -0.109 4.109 9 C -0.128 4.128 10 C -0.167 4.167 11 C 0.282 3.718 12 O -0.487 6.487 13 N -0.358 5.358 14 C 0.106 3.894 15 C -0.586 4.586 16 H 0.079 0.921 17 C -0.173 4.173 18 N -0.569 5.569 19 Si 0.761 3.239 20 H -0.190 1.190 21 H -0.196 1.196 22 H -0.188 1.188 23 C -0.145 4.145 24 C -0.145 4.145 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.246 0.754 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.082 0.918 44 H 0.148 0.852 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -27.368 -17.066 0.012 32.253 hybrid contribution 0.533 0.845 0.010 0.999 sum -26.835 -16.220 0.022 31.356 Atomic orbital electron populations 1.21782 0.94851 1.02101 1.02167 1.21474 0.96305 0.95487 1.02015 1.20646 0.89723 0.97894 1.03267 1.20140 0.96661 0.99778 0.93148 1.21251 0.94250 1.00775 0.98254 1.21293 0.94622 1.00442 0.98149 1.20089 0.96386 0.99752 0.93400 1.20599 0.90164 0.95703 1.04456 1.21198 0.92941 0.96623 1.01999 1.21721 0.97221 0.90877 1.06851 1.21703 0.81779 0.93318 0.74993 1.90628 1.56446 1.48785 1.52804 1.46102 1.07104 1.09504 1.73086 1.19077 0.93385 0.81550 0.95414 1.21312 0.89963 0.94649 1.52634 0.92113 1.25592 0.95540 1.02616 0.93584 1.69977 1.07619 1.28611 1.50663 0.85869 0.79177 0.79461 0.79440 1.18998 1.19645 1.18764 1.21292 0.94612 1.00438 0.98151 1.21251 0.94259 1.00771 0.98246 0.92404 0.92247 0.92395 0.92248 0.92248 0.90670 0.90669 0.85006 0.85205 0.89350 0.89362 0.93141 0.93127 0.86238 0.86268 0.75425 0.97257 0.97349 0.91824 0.85188 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.31 5.92 30.60 0.18 -1.13 16 3 C -0.08 -1.01 5.34 29.85 0.16 -0.85 16 4 C -0.10 -1.70 5.13 -19.87 -0.10 -1.80 16 5 C -0.13 -2.30 9.70 22.27 0.22 -2.09 16 6 C -0.13 -2.46 9.70 22.27 0.22 -2.24 16 7 C -0.10 -1.91 5.13 -19.86 -0.10 -2.01 16 8 C -0.07 -1.23 5.35 29.85 0.16 -1.07 16 9 C -0.09 -2.11 4.49 30.59 0.14 -1.97 16 10 C -0.13 -2.94 5.70 29.85 0.17 -2.77 16 11 C 0.49 18.20 7.83 87.66 0.69 18.88 16 12 O -0.60 -27.85 15.98 -3.03 -0.05 -27.90 16 13 N -0.71 -28.29 5.55 -466.76 -2.59 -30.88 16 14 C 0.23 11.48 4.50 85.63 0.38 11.86 16 15 C -0.55 -30.53 9.83 25.60 0.25 -30.28 16 16 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 17 C 0.03 1.55 5.47 84.65 0.46 2.01 16 18 N -0.93 -55.74 13.96 21.45 0.30 -55.44 16 19 Si 0.94 44.64 27.47 68.60 1.88 46.52 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.26 -12.55 6.54 99.48 0.65 -11.90 16 23 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 24 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 31 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 32 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 35 H 0.09 1.24 8.09 -2.39 -0.02 1.23 16 36 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 37 H 0.05 1.38 8.10 -2.38 -0.02 1.37 16 38 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.41 14.03 8.32 -92.71 -0.77 13.26 16 41 H 0.01 0.50 7.20 -2.38 -0.02 0.48 16 42 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 43 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 45 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -70.72 374.12 3.63 -67.09 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.12 Total: 19.03 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.97 Total: -18.43 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.29 Total: -86.32 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.05 Total: -27.90 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -70.72 3.63 -67.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843868266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.856 kcal (2) G-P(sol) polarization free energy of solvation -70.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds