Wall clock time and date at job start Tue Mar 31 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46581 * 2 1 4 4 C 1.38168 * 120.02893 * 264.97467 * 3 2 1 5 5 C 1.38249 * 120.05144 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.11314 * 359.97438 * 5 4 3 7 7 C 1.38118 * 120.05903 * 359.76321 * 6 5 4 8 8 C 1.50693 * 120.03233 * 180.27672 * 7 6 5 9 9 N 1.46902 * 109.47691 * 267.85571 * 8 7 6 10 10 C 1.46897 * 111.00226 * 163.55828 * 9 8 7 11 11 C 1.50703 * 109.46985 * 195.36511 * 10 9 8 12 12 H 1.08001 * 120.00229 * 0.71484 * 11 10 9 13 13 C 1.37875 * 119.99964 * 180.71672 * 11 10 9 14 14 N 1.31516 * 120.00096 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00131 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47028 * 89.99989 * 15 13 11 17 17 H 1.48499 * 109.47165 * 209.99958 * 15 13 11 18 18 H 1.48500 * 109.47111 * 330.00220 * 15 13 11 19 19 C 1.46898 * 110.99836 * 287.51589 * 9 8 7 20 20 C 1.53001 * 109.47226 * 296.74148 * 19 9 8 21 21 C 1.53003 * 117.49567 * 242.83722 * 20 19 9 22 22 C 1.52999 * 117.49793 * 174.17672 * 20 19 9 23 23 C 1.38712 * 120.02484 * 85.00354 * 3 2 1 24 24 O 1.35905 * 120.05695 * 359.97438 * 23 3 2 25 25 H 1.09002 * 109.47214 * 60.00285 * 1 2 3 26 26 H 1.09001 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47524 * 299.99887 * 1 2 3 28 28 H 1.08998 * 109.47201 * 240.00776 * 2 1 3 29 29 H 1.08995 * 109.47563 * 119.99869 * 2 1 3 30 30 H 1.07997 * 119.97345 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.93740 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.96935 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47251 * 27.85516 * 8 7 6 34 34 H 1.09003 * 109.47401 * 147.85759 * 8 7 6 35 35 H 1.09003 * 109.47319 * 315.35948 * 10 9 8 36 36 H 1.09000 * 109.47241 * 75.36592 * 10 9 8 37 37 H 0.96998 * 119.99989 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.47207 * 56.74425 * 19 9 8 39 39 H 1.09001 * 109.46889 * 176.73964 * 19 9 8 40 40 H 1.08999 * 115.54989 * 28.50280 * 20 19 9 41 41 H 1.09004 * 117.50022 * 359.97438 * 21 20 19 42 42 H 1.08999 * 117.49752 * 145.01972 * 21 20 19 43 43 H 1.08998 * 117.49513 * 214.97774 * 22 20 19 44 44 H 1.08999 * 117.50249 * 0.02562 * 22 20 19 45 45 H 0.96699 * 113.99832 * 83.09569 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3614 2.0379 -1.1916 5 6 2.8227 3.3412 -1.1921 6 6 2.9553 4.0306 -0.0008 7 6 2.6224 3.4202 1.1926 8 6 2.7612 4.1742 2.4899 9 7 4.0885 3.9189 3.0652 10 6 4.4147 4.9117 4.0976 11 6 5.8915 4.8617 4.3939 12 1 6.5263 4.1703 3.8596 13 6 6.4321 5.6985 5.3470 14 7 7.7208 5.6545 5.6059 15 14 5.3342 6.8948 6.2706 16 1 4.8128 6.2414 7.4980 17 1 6.1190 8.0983 6.6457 18 1 4.1981 7.2954 5.4023 19 6 4.1763 2.5539 3.6010 20 6 3.1789 2.3918 4.7498 21 6 3.7445 2.0916 6.1394 22 6 3.0189 0.9956 5.3547 23 6 2.1649 2.1102 1.1964 24 8 1.8418 1.5054 2.3698 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.2584 1.5017 -2.1234 31 1 3.0791 3.8218 -2.1247 32 1 3.3154 5.0488 -0.0039 33 1 2.6452 5.2419 2.3038 34 1 1.9927 3.8414 3.1877 35 1 4.1492 5.9071 3.7413 36 1 3.8542 4.6893 5.0056 37 1 8.1012 6.2435 6.2762 38 1 3.9422 1.8384 2.8128 39 1 5.1864 2.3721 3.9684 40 1 2.2904 3.0206 4.6932 41 1 4.8272 2.0091 6.2350 42 1 3.2278 2.5225 6.9969 43 1 2.0252 0.7060 5.6964 44 1 3.6246 0.1926 4.9346 45 1 2.5455 0.9507 2.7332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848885944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:31 Heat of formation + Delta-G solvation = 9.694682 kcal Electronic energy + Delta-G solvation = -23953.791074 eV Core-core repulsion = 20744.200079 eV Total energy + Delta-G solvation = -3209.590995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21339 -37.99554 -36.40022 -35.37585 -33.98101 -32.45236 -30.68591 -28.87653 -27.95998 -26.56581 -24.09514 -23.79331 -21.99772 -21.57021 -21.38924 -20.46026 -18.98303 -18.13491 -16.71965 -16.16494 -15.82732 -15.46979 -15.12844 -14.62691 -14.22688 -14.12035 -13.74501 -13.65596 -13.53311 -13.11139 -12.77586 -12.36075 -12.11306 -12.08313 -11.78983 -11.62695 -11.44524 -11.35968 -11.27687 -11.10128 -10.98627 -10.89351 -10.67923 -10.33208 -10.13848 -9.92451 -9.79294 -9.35565 -9.27181 -8.55983 -8.48336 -8.33101 -7.33268 -6.02879 -3.98910 1.42861 1.49493 3.28853 3.36782 3.38591 3.75185 4.22224 4.43211 4.43832 4.73137 4.81649 4.97070 5.12332 5.15744 5.19195 5.30887 5.32649 5.36319 5.43341 5.45952 5.50545 5.62018 5.76514 5.84546 5.88274 5.91487 5.94951 5.98774 6.09042 6.12797 6.22346 6.28286 6.33309 6.36711 6.57415 6.59758 6.60911 6.74645 6.83581 6.90194 7.00362 7.01497 7.63737 7.84889 7.89974 8.03435 8.68253 9.06360 9.59639 11.10479 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.004958 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.324465 B = 5645.530186 C = 6515.771487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.118 4.118 4 C -0.113 4.113 5 C -0.129 4.129 6 C -0.091 4.091 7 C -0.079 4.079 8 C 0.083 3.917 9 N -0.514 5.514 10 C 0.160 3.840 11 C -0.500 4.500 12 H 0.079 0.921 13 C 0.070 3.930 14 N -0.902 5.902 15 Si 0.872 3.128 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.268 1.268 19 C 0.096 3.904 20 C -0.171 4.171 21 C -0.169 4.169 22 C -0.189 4.189 23 C 0.113 3.887 24 O -0.491 6.491 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.023 0.977 36 H -0.005 1.005 37 H 0.262 0.738 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.225 -9.960 -9.655 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.118 4.118 4 C -0.131 4.131 5 C -0.147 4.147 6 C -0.110 4.110 7 C -0.080 4.080 8 C -0.044 4.044 9 N -0.235 5.235 10 C 0.034 3.966 11 C -0.538 4.538 12 H 0.097 0.903 13 C -0.131 4.131 14 N -0.541 5.541 15 Si 0.699 3.301 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.193 1.193 19 C -0.033 4.033 20 C -0.190 4.190 21 C -0.206 4.206 22 C -0.226 4.226 23 C 0.067 3.933 24 O -0.304 6.304 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.013 0.987 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -13.249 -9.515 -9.974 19.120 hybrid contribution -0.589 0.465 1.354 1.548 sum -13.838 -9.051 -8.620 18.647 Atomic orbital electron populations 1.21701 0.94792 1.01256 1.02270 1.20344 0.96219 0.92466 1.02213 1.20164 1.01890 0.96771 0.93023 1.20818 1.00339 0.95158 0.96813 1.21083 1.00825 0.94791 0.98023 1.20968 0.98282 1.00373 0.91334 1.20165 0.97422 0.94329 0.96055 1.21057 0.92491 0.98635 0.92257 1.62258 1.23724 1.02682 1.34872 1.20236 0.97731 0.90238 0.88354 1.20969 0.91007 1.21495 1.20377 0.90335 1.24849 0.94744 0.96901 0.96656 1.69891 1.11138 1.39354 1.33760 0.86919 0.81115 0.81375 0.80667 1.20353 1.21307 1.19311 1.21785 0.98515 0.90568 0.92407 1.22988 1.01849 0.98017 0.96173 1.22956 1.00738 1.02030 0.94850 1.22901 1.01418 0.92311 1.06015 1.18104 0.98769 0.91365 0.85017 1.84837 1.43690 1.66069 1.35825 0.92959 0.92819 0.92084 0.91511 0.91333 0.86365 0.86194 0.85632 0.90779 0.93320 0.95869 0.98709 0.92775 0.93082 0.89611 0.88233 0.88185 0.89811 0.89591 0.89334 0.75665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.08 -0.77 5.79 -27.88 -0.16 -0.93 16 3 C -0.12 -1.49 5.15 -104.47 -0.54 -2.03 16 4 C -0.11 -1.35 9.68 -39.60 -0.38 -1.73 16 5 C -0.13 -1.61 10.04 -39.56 -0.40 -2.01 16 6 C -0.09 -1.32 9.69 -39.61 -0.38 -1.70 16 7 C -0.08 -1.24 5.13 -104.48 -0.54 -1.77 16 8 C 0.08 1.45 4.83 -4.98 -0.02 1.43 16 9 N -0.51 -10.37 4.60 -237.52 -1.09 -11.47 16 10 C 0.16 3.78 3.66 -4.98 -0.02 3.76 16 11 C -0.50 -13.87 9.12 -34.44 -0.31 -14.18 16 12 H 0.08 2.39 7.74 -52.49 -0.41 1.99 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 15 Si 0.87 21.42 27.45 -169.99 -4.67 16.75 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.27 -6.37 6.56 56.52 0.37 -5.99 16 19 C 0.10 1.72 4.87 -3.82 -0.02 1.70 16 20 C -0.17 -2.78 2.49 -90.62 -0.23 -3.01 16 21 C -0.17 -2.79 10.13 -26.69 -0.27 -3.06 16 22 C -0.19 -2.55 9.53 -26.69 -0.25 -2.80 16 23 C 0.11 1.62 5.71 -39.21 -0.22 1.40 16 24 O -0.49 -6.76 10.00 -19.44 -0.19 -6.95 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.59 8.05 -51.93 -0.42 0.18 16 29 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.07 1.28 7.65 -51.93 -0.40 0.88 16 34 H 0.05 0.85 5.33 -51.93 -0.28 0.57 16 35 H 0.02 0.56 6.84 -51.93 -0.36 0.21 16 36 H 0.00 -0.11 6.09 -51.93 -0.32 -0.43 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.05 0.82 4.40 -51.93 -0.23 0.59 16 39 H 0.09 1.77 6.97 -51.93 -0.36 1.40 16 40 H 0.10 1.72 6.17 -51.93 -0.32 1.40 16 41 H 0.10 1.80 8.03 -51.93 -0.42 1.39 16 42 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.38 4.70 5.69 45.56 0.26 4.96 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -30.05 349.94 -9.99 -40.04 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.61 Total: 6.98 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -3.48 Total: -24.05 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.32 Total: -38.05 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.19 Total: -6.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.05 -9.99 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848885944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.736 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds