Wall clock time and date at job start Tue Mar 31 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46581 * 2 1 4 4 C 1.38168 * 120.02893 * 264.97467 * 3 2 1 5 5 C 1.38249 * 120.05144 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.11314 * 359.97438 * 5 4 3 7 7 C 1.38118 * 120.05903 * 359.76321 * 6 5 4 8 8 C 1.50693 * 120.03233 * 180.27672 * 7 6 5 9 9 N 1.46902 * 109.47691 * 267.85571 * 8 7 6 10 10 C 1.46897 * 111.00226 * 163.55828 * 9 8 7 11 11 C 1.50703 * 109.46985 * 195.36511 * 10 9 8 12 12 H 1.08001 * 120.00229 * 0.71484 * 11 10 9 13 13 C 1.37875 * 119.99964 * 180.71672 * 11 10 9 14 14 N 1.31516 * 120.00096 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00131 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47028 * 89.99989 * 15 13 11 17 17 H 1.48499 * 109.47165 * 209.99958 * 15 13 11 18 18 H 1.48500 * 109.47111 * 330.00220 * 15 13 11 19 19 C 1.46898 * 110.99836 * 287.51589 * 9 8 7 20 20 C 1.53001 * 109.47226 * 296.74148 * 19 9 8 21 21 C 1.53003 * 117.49567 * 242.83722 * 20 19 9 22 22 C 1.52999 * 117.49793 * 174.17672 * 20 19 9 23 23 C 1.38712 * 120.02484 * 85.00354 * 3 2 1 24 24 O 1.35905 * 120.05695 * 359.97438 * 23 3 2 25 25 H 1.09002 * 109.47214 * 60.00285 * 1 2 3 26 26 H 1.09001 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47524 * 299.99887 * 1 2 3 28 28 H 1.08998 * 109.47201 * 240.00776 * 2 1 3 29 29 H 1.08995 * 109.47563 * 119.99869 * 2 1 3 30 30 H 1.07997 * 119.97345 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.93740 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.96935 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47251 * 27.85516 * 8 7 6 34 34 H 1.09003 * 109.47401 * 147.85759 * 8 7 6 35 35 H 1.09003 * 109.47319 * 315.35948 * 10 9 8 36 36 H 1.09000 * 109.47241 * 75.36592 * 10 9 8 37 37 H 0.96998 * 119.99989 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.47207 * 56.74425 * 19 9 8 39 39 H 1.09001 * 109.46889 * 176.73964 * 19 9 8 40 40 H 1.08999 * 115.54989 * 28.50280 * 20 19 9 41 41 H 1.09004 * 117.50022 * 359.97438 * 21 20 19 42 42 H 1.08999 * 117.49752 * 145.01972 * 21 20 19 43 43 H 1.08998 * 117.49513 * 214.97774 * 22 20 19 44 44 H 1.08999 * 117.50249 * 0.02562 * 22 20 19 45 45 H 0.96699 * 113.99832 * 83.09569 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3614 2.0379 -1.1916 5 6 2.8227 3.3412 -1.1921 6 6 2.9553 4.0306 -0.0008 7 6 2.6224 3.4202 1.1926 8 6 2.7612 4.1742 2.4899 9 7 4.0885 3.9189 3.0652 10 6 4.4147 4.9117 4.0976 11 6 5.8915 4.8617 4.3939 12 1 6.5263 4.1703 3.8596 13 6 6.4321 5.6985 5.3470 14 7 7.7208 5.6545 5.6059 15 14 5.3342 6.8948 6.2706 16 1 4.8128 6.2414 7.4980 17 1 6.1190 8.0983 6.6457 18 1 4.1981 7.2954 5.4023 19 6 4.1763 2.5539 3.6010 20 6 3.1789 2.3918 4.7498 21 6 3.7445 2.0916 6.1394 22 6 3.0189 0.9956 5.3547 23 6 2.1649 2.1102 1.1964 24 8 1.8418 1.5054 2.3698 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.2584 1.5017 -2.1234 31 1 3.0791 3.8218 -2.1247 32 1 3.3154 5.0488 -0.0039 33 1 2.6452 5.2419 2.3038 34 1 1.9927 3.8414 3.1877 35 1 4.1492 5.9071 3.7413 36 1 3.8542 4.6893 5.0056 37 1 8.1012 6.2435 6.2762 38 1 3.9422 1.8384 2.8128 39 1 5.1864 2.3721 3.9684 40 1 2.2904 3.0206 4.6932 41 1 4.8272 2.0091 6.2350 42 1 3.2278 2.5225 6.9969 43 1 2.0252 0.7060 5.6964 44 1 3.6246 0.1926 4.9346 45 1 2.5455 0.9507 2.7332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848885944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:31 Heat of formation + Delta-G solvation = -8.443966 kcal Electronic energy + Delta-G solvation = -23954.577624 eV Core-core repulsion = 20744.200079 eV Total energy + Delta-G solvation = -3210.377545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32507 -39.33815 -37.47785 -36.71391 -35.14199 -34.39798 -31.93108 -29.85619 -29.77160 -27.92700 -25.61482 -24.76323 -23.21131 -23.10489 -22.63696 -21.59492 -20.39179 -19.23202 -18.79853 -17.37456 -17.00953 -16.73930 -16.30573 -16.19246 -15.70120 -15.64683 -14.92822 -14.70159 -14.60146 -14.42576 -14.19211 -13.84594 -13.56819 -13.17654 -13.03347 -12.99627 -12.83901 -12.64525 -12.50171 -12.39117 -12.31948 -12.14709 -12.01277 -11.84274 -11.71971 -11.50359 -11.15371 -11.07290 -10.79245 -10.65415 -9.56230 -9.36476 -8.92293 -8.25653 -6.26556 0.39818 0.45433 1.32996 1.34461 1.44589 2.34771 2.70502 2.95425 3.08744 3.30079 3.49766 3.84823 3.85629 3.89574 4.03515 4.05496 4.20556 4.34274 4.39932 4.50741 4.55547 4.60334 4.62559 4.63250 4.73734 4.74172 4.80390 4.91971 4.95298 5.03647 5.06776 5.11358 5.13147 5.16299 5.23518 5.31352 5.40887 5.43725 5.57377 5.58937 5.65082 5.72539 5.98554 6.04237 6.39844 6.66200 6.78236 6.82944 7.36182 8.91245 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.004958 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.324465 B = 5645.530186 C = 6515.771487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.128 4.128 6 C -0.109 4.109 7 C -0.103 4.103 8 C 0.091 3.909 9 N -0.529 5.529 10 C 0.174 3.826 11 C -0.500 4.500 12 H 0.035 0.965 13 C 0.013 3.987 14 N -0.949 5.949 15 Si 0.938 3.062 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.253 1.253 19 C 0.104 3.896 20 C -0.178 4.178 21 C -0.192 4.192 22 C -0.148 4.148 23 C 0.101 3.899 24 O -0.493 6.493 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.019 0.981 36 H -0.003 1.003 37 H 0.265 0.735 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.728 -11.227 -10.826 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.120 4.120 4 C -0.128 4.128 5 C -0.146 4.146 6 C -0.127 4.127 7 C -0.104 4.104 8 C -0.036 4.036 9 N -0.251 5.251 10 C 0.047 3.953 11 C -0.539 4.539 12 H 0.053 0.947 13 C -0.184 4.184 14 N -0.590 5.590 15 Si 0.763 3.237 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.177 1.177 19 C -0.024 4.024 20 C -0.198 4.198 21 C -0.229 4.229 22 C -0.185 4.185 23 C 0.056 3.944 24 O -0.307 6.307 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.038 0.962 36 H 0.015 0.985 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -15.771 -10.800 -11.159 22.134 hybrid contribution 0.233 0.764 1.601 1.789 sum -15.538 -10.037 -9.558 20.821 Atomic orbital electron populations 1.21664 0.94299 1.02168 1.01499 1.20422 0.96521 0.90953 1.03301 1.20482 1.01069 0.97936 0.92527 1.21222 0.98787 0.94936 0.97811 1.21381 0.99941 0.95121 0.98151 1.21096 0.98981 1.00664 0.91999 1.20109 0.99692 0.95261 0.95385 1.20974 0.90621 0.98803 0.93208 1.62123 1.26142 1.02921 1.33963 1.19932 0.94799 0.91156 0.89437 1.21142 0.92856 1.20217 1.19643 0.94689 1.25695 0.96073 0.98915 0.97703 1.70042 1.13254 1.40787 1.34924 0.85845 0.79499 0.78854 0.79547 1.19363 1.20883 1.17656 1.21638 0.97121 0.89934 0.93714 1.22790 1.01062 1.00730 0.95173 1.22928 0.99670 1.05055 0.95245 1.22992 1.02099 0.90962 1.02444 1.18224 0.99190 0.91082 0.85878 1.84822 1.43831 1.66127 1.35907 0.92692 0.91095 0.93872 0.89582 0.91129 0.83329 0.83721 0.86029 0.91290 0.93243 0.96249 0.98507 0.92623 0.90924 0.93204 0.88698 0.90702 0.89453 0.87272 0.87571 0.75151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.89 71.98 0.71 -1.56 16 2 C -0.07 -1.29 5.79 29.85 0.17 -1.12 16 3 C -0.12 -2.72 5.15 -19.77 -0.10 -2.82 16 4 C -0.11 -2.26 9.68 22.26 0.22 -2.05 16 5 C -0.13 -2.91 10.04 22.28 0.22 -2.68 16 6 C -0.11 -3.08 9.69 22.25 0.22 -2.87 16 7 C -0.10 -3.20 5.13 -19.77 -0.10 -3.30 16 8 C 0.09 3.20 4.83 85.55 0.41 3.61 16 9 N -0.53 -21.90 4.60 -905.37 -4.17 -26.07 16 10 C 0.17 8.36 3.66 85.56 0.31 8.67 16 11 C -0.50 -28.94 9.12 25.60 0.23 -28.71 16 12 H 0.03 2.27 7.74 -2.91 -0.02 2.25 16 13 C 0.01 0.77 5.47 84.65 0.46 1.23 16 14 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 15 Si 0.94 44.69 27.45 68.60 1.88 46.57 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 18 H -0.25 -11.31 6.56 99.48 0.65 -10.66 16 19 C 0.10 3.82 4.87 86.30 0.42 4.24 16 20 C -0.18 -5.72 2.49 -10.79 -0.03 -5.75 16 21 C -0.19 -6.33 10.13 30.62 0.31 -6.02 16 22 C -0.15 -3.66 9.53 30.62 0.29 -3.37 16 23 C 0.10 2.78 5.71 22.51 0.13 2.91 16 24 O -0.49 -12.75 10.00 -92.48 -0.93 -13.67 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 1.17 8.05 -2.39 -0.02 1.15 16 29 H 0.07 1.20 7.69 -2.39 -0.02 1.18 16 30 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 31 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.07 2.42 7.65 -2.39 -0.02 2.40 16 34 H 0.05 1.71 5.33 -2.39 -0.01 1.69 16 35 H 0.02 0.95 6.84 -2.39 -0.02 0.93 16 36 H 0.00 -0.13 6.09 -2.39 -0.01 -0.15 16 37 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.07 2.31 4.40 -2.39 -0.01 2.30 16 39 H 0.05 2.17 6.97 -2.39 -0.02 2.15 16 40 H 0.10 3.20 6.17 -2.39 -0.01 3.18 16 41 H 0.07 2.83 8.03 -2.39 -0.02 2.81 16 42 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.39 8.77 5.69 -74.06 -0.42 8.35 16 Total: -1.00 -67.45 349.94 1.48 -65.97 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.51 Total: 26.12 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 3.88 Total: -39.59 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -3.87 Total: -85.40 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.93 Total: -13.67 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -67.45 1.48 -65.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848885944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.530 kcal (2) G-P(sol) polarization free energy of solvation -67.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds