Wall clock time and date at job start Tue Mar 31 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47011 * 2 1 4 4 C 1.38171 * 120.02521 * 264.99900 * 3 2 1 5 5 C 1.38244 * 120.05436 * 180.25752 * 4 3 2 6 6 C 1.38294 * 120.11199 * 359.44067 * 5 4 3 7 7 C 1.38125 * 120.05036 * 0.55704 * 6 5 4 8 8 C 1.50703 * 120.02202 * 179.70528 * 7 6 5 9 9 N 1.46904 * 109.46607 * 260.02013 * 8 7 6 10 10 C 1.46846 * 111.00214 * 45.79185 * 9 8 7 11 11 C 1.53031 * 109.52050 * 185.83929 * 10 9 8 12 12 C 1.53120 * 109.28012 * 300.81603 * 11 10 9 13 13 C 1.50698 * 109.57820 * 177.59181 * 12 11 10 14 14 H 1.07995 * 120.00500 * 240.29409 * 13 12 11 15 15 C 1.37884 * 119.99942 * 60.28699 * 13 12 11 16 16 N 1.31518 * 119.99462 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00185 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47584 * 90.00230 * 17 15 13 19 19 H 1.48505 * 109.47216 * 210.00375 * 17 15 13 20 20 H 1.48500 * 109.47126 * 329.99753 * 17 15 13 21 21 C 1.53125 * 109.15870 * 57.66257 * 12 11 10 22 22 C 1.46848 * 110.99647 * 170.00298 * 9 8 7 23 23 C 1.38706 * 120.03077 * 84.97561 * 3 2 1 24 24 O 1.35899 * 120.05784 * 359.97438 * 23 3 2 25 25 H 1.08998 * 109.46968 * 60.00561 * 1 2 3 26 26 H 1.09006 * 109.46905 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47592 * 300.00221 * 1 2 3 28 28 H 1.08997 * 109.47426 * 239.99254 * 2 1 3 29 29 H 1.09005 * 109.46655 * 119.99693 * 2 1 3 30 30 H 1.08002 * 119.96962 * 359.97130 * 4 3 2 31 31 H 1.08001 * 119.94445 * 179.70422 * 5 4 3 32 32 H 1.07994 * 119.97164 * 180.26057 * 6 5 4 33 33 H 1.08998 * 109.47212 * 20.01548 * 8 7 6 34 34 H 1.09005 * 109.47199 * 140.02453 * 8 7 6 35 35 H 1.09000 * 109.45962 * 305.85134 * 10 9 8 36 36 H 1.08996 * 109.45836 * 65.82477 * 10 9 8 37 37 H 1.09005 * 109.50415 * 180.87958 * 11 10 9 38 38 H 1.08994 * 109.51064 * 60.76150 * 11 10 9 39 39 H 1.08998 * 109.52864 * 297.75316 * 12 11 10 40 40 H 0.97003 * 119.99332 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.50635 * 182.40729 * 21 12 11 42 42 H 1.09000 * 109.53837 * 62.30365 * 21 12 11 43 43 H 1.08996 * 109.46166 * 294.17482 * 22 9 8 44 44 H 1.09007 * 109.46596 * 54.15399 * 22 9 8 45 45 H 0.96706 * 114.00065 * 89.99795 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0379 -1.1917 5 6 2.8270 3.3395 -1.1920 6 6 2.9542 4.0310 -0.0012 7 6 2.6268 3.4186 1.1928 8 6 2.7721 4.1706 2.4907 9 7 4.0214 3.7699 3.1515 10 6 5.1374 3.7464 2.1974 11 6 6.3855 3.1872 2.8840 12 6 6.7371 4.0660 4.0876 13 6 7.9304 3.4878 4.8036 14 1 7.8453 3.1836 5.8363 15 6 9.1309 3.3471 4.1402 16 7 9.2346 3.7179 2.8827 17 14 10.6098 2.6297 5.0275 18 1 10.6248 1.1552 4.8527 19 1 11.8551 3.2079 4.4614 20 1 10.5256 2.9560 6.4738 21 6 5.5408 4.1126 5.0423 22 6 4.3170 4.6450 4.2930 23 6 2.1645 2.1103 1.1962 24 8 1.8409 1.5060 2.3696 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.2584 1.5014 -2.1234 31 1 3.0880 3.8185 -2.1241 32 1 3.3144 5.0491 -0.0044 33 1 2.7949 5.2416 2.2895 34 1 1.9275 3.9407 3.1403 35 1 4.8761 3.1147 1.3484 36 1 5.3380 4.7593 1.8482 37 1 7.2178 3.1844 2.1800 38 1 6.1902 2.1693 3.2213 39 1 6.9705 5.0746 3.7465 40 1 10.0793 3.6192 2.4161 41 1 5.7693 4.7711 5.8803 42 1 5.3318 3.1095 5.4141 43 1 4.5215 5.6536 3.9340 44 1 3.4600 4.6659 4.9663 45 1 2.5768 1.0374 2.7868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848902065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:00 Heat of formation + Delta-G solvation = -34.966152 kcal Electronic energy + Delta-G solvation = -23641.900488 eV Core-core repulsion = 20430.372854 eV Total energy + Delta-G solvation = -3211.527634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18972 -38.02640 -36.41556 -34.73838 -33.51576 -31.73079 -29.96197 -29.69035 -28.93887 -26.50646 -24.40611 -23.92771 -22.26043 -21.83288 -21.11448 -20.14089 -18.58771 -18.03286 -16.38556 -16.06688 -15.74587 -15.40400 -14.95483 -14.41734 -14.22870 -13.96125 -13.80032 -13.53078 -13.17931 -12.89369 -12.83939 -12.42688 -12.24008 -12.11953 -11.88946 -11.74082 -11.51785 -11.24737 -11.19689 -10.93826 -10.89050 -10.71741 -10.45990 -10.19604 -10.13937 -9.93883 -9.41512 -8.95924 -8.73484 -8.53735 -8.41731 -8.27601 -7.71005 -5.95716 -4.00976 1.35634 1.36472 3.32050 3.38786 3.42060 3.64387 4.43600 4.46335 4.59731 4.69612 4.79147 4.99265 5.14013 5.32068 5.34076 5.35784 5.42412 5.51881 5.65215 5.71230 5.77564 5.84413 5.91772 5.92943 5.99784 6.09783 6.16056 6.21092 6.25776 6.34416 6.51234 6.51811 6.63183 6.65323 6.67074 6.87611 6.90751 7.09494 7.17615 7.45826 7.63535 7.70697 7.84827 7.87413 8.06522 8.18137 8.50169 9.02829 9.63330 11.10388 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020676 B = 0.003985 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.909803 B = 7023.887285 C = 7252.574791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.113 4.113 4 C -0.109 4.109 5 C -0.128 4.128 6 C -0.104 4.104 7 C -0.095 4.095 8 C 0.095 3.905 9 N -0.528 5.528 10 C 0.055 3.945 11 C -0.102 4.102 12 C 0.048 3.952 13 C -0.510 4.510 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.105 4.105 22 C 0.061 3.939 23 C 0.130 3.870 24 O -0.492 6.492 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.033 0.967 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.020 0.980 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.019 0.981 40 H 0.259 0.741 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.023 0.977 44 H 0.058 0.942 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.539 -3.086 -7.330 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.113 4.113 4 C -0.127 4.127 5 C -0.146 4.146 6 C -0.122 4.122 7 C -0.096 4.096 8 C -0.032 4.032 9 N -0.253 5.253 10 C -0.072 4.072 11 C -0.140 4.140 12 C 0.029 3.971 13 C -0.548 4.548 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.143 4.143 22 C -0.067 4.067 23 C 0.084 3.916 24 O -0.303 6.303 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.076 0.924 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -16.016 -3.313 -7.374 17.941 hybrid contribution 1.523 0.348 0.122 1.567 sum -14.493 -2.964 -7.253 16.475 Atomic orbital electron populations 1.21704 0.94795 1.01343 1.02169 1.20360 0.96163 0.92318 1.02506 1.20184 1.01519 0.96747 0.92888 1.20867 0.99793 0.95077 0.96997 1.21054 1.00720 0.94872 0.97948 1.20985 0.99423 1.00081 0.91742 1.20130 0.99110 0.94963 0.95406 1.20980 0.94611 0.95649 0.92001 1.62160 1.02121 1.51805 1.09218 1.22334 0.91934 0.98660 0.94248 1.21643 0.93991 0.98408 1.00004 1.18682 0.91105 0.95584 0.91697 1.21216 0.94808 1.41156 0.97656 0.92782 1.24968 0.98620 0.95522 0.94892 1.69886 1.25471 1.48112 1.09650 0.86644 0.82425 0.79274 0.79940 1.20749 1.21349 1.19994 1.21671 0.94466 0.99983 0.98178 1.22125 0.98711 0.93525 0.92345 1.18003 0.97571 0.90704 0.85275 1.84679 1.39561 1.71422 1.34623 0.93014 0.92727 0.92119 0.91460 0.90953 0.86122 0.86064 0.86103 0.94835 0.89990 0.92348 0.96221 0.89111 0.94062 0.96243 0.93147 0.93216 0.92497 0.95841 0.92383 0.74889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.89 37.16 0.37 -1.00 16 2 C -0.08 -0.79 5.79 -27.88 -0.16 -0.95 16 3 C -0.11 -1.42 5.15 -104.47 -0.54 -1.95 16 4 C -0.11 -1.28 9.68 -39.60 -0.38 -1.67 16 5 C -0.13 -1.54 10.04 -39.56 -0.40 -1.94 16 6 C -0.10 -1.40 8.64 -39.60 -0.34 -1.74 16 7 C -0.10 -1.39 3.70 -104.47 -0.39 -1.77 16 8 C 0.09 1.44 5.07 -4.97 -0.03 1.42 16 9 N -0.53 -9.28 4.80 -236.11 -1.13 -10.41 16 10 C 0.06 1.09 4.80 -3.84 -0.02 1.07 16 11 C -0.10 -2.41 5.12 -26.65 -0.14 -2.55 16 12 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 13 C -0.51 -14.02 8.56 -34.44 -0.29 -14.32 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 16 N -0.89 -25.47 11.37 55.43 0.63 -24.84 16 17 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.11 -2.20 5.32 -26.64 -0.14 -2.34 16 22 C 0.06 1.09 5.42 -3.83 -0.02 1.07 16 23 C 0.13 1.82 6.65 -39.22 -0.26 1.56 16 24 O -0.49 -6.62 11.88 -19.42 -0.23 -6.85 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 29 H 0.07 0.75 7.69 -51.93 -0.40 0.35 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 33 H 0.03 0.50 7.94 -51.93 -0.41 0.08 16 34 H 0.08 1.22 7.85 -51.93 -0.41 0.81 16 35 H 0.06 1.11 6.03 -51.93 -0.31 0.80 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 38 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 45 H 0.39 4.57 9.06 45.56 0.41 4.98 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -28.98 354.63 -10.34 -39.31 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.89 Total: 3.67 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -3.03 Total: -22.54 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.50 Total: -35.25 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.23 Total: -6.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.98 -10.34 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848902065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.347 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds