Wall clock time and date at job start Tue Mar 31 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.38256 * 120.00041 * 59.72148 * 4 2 1 6 6 C 1.38212 * 120.00130 * 179.79009 * 5 4 2 7 7 C 1.38262 * 119.99662 * 0.46335 * 6 5 4 8 8 C 1.38211 * 120.00108 * 359.76977 * 7 6 5 9 9 C 1.38211 * 119.99628 * 239.99756 * 4 2 1 10 10 C 1.50694 * 120.00207 * 359.97438 * 9 4 2 11 11 N 1.46901 * 109.47482 * 80.00156 * 10 9 4 12 12 C 1.47439 * 111.00212 * 69.86931 * 11 10 9 13 13 C 1.54321 * 107.23000 * 123.25985 * 12 11 10 14 14 C 1.55143 * 103.02038 * 22.28643 * 13 12 11 15 15 O 1.42900 * 110.99397 * 82.43447 * 14 13 12 16 16 C 1.50700 * 110.99198 * 206.21877 * 14 13 12 17 17 H 1.07994 * 120.00272 * 118.54187 * 16 14 13 18 18 C 1.37886 * 119.99276 * 298.54465 * 16 14 13 19 19 N 1.31511 * 120.00150 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99524 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47152 * 89.99498 * 20 18 16 22 22 H 1.48497 * 109.47029 * 209.99771 * 20 18 16 23 23 H 1.48504 * 109.46863 * 329.99802 * 20 18 16 24 24 C 1.47845 * 110.99886 * 190.71710 * 11 10 9 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.08006 * 120.00193 * 0.02562 * 5 4 2 33 33 H 1.07994 * 120.00232 * 180.25241 * 6 5 4 34 34 H 1.08002 * 119.99621 * 179.78909 * 7 6 5 35 35 H 1.08000 * 120.00372 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.47189 * 199.99614 * 10 9 4 37 37 H 1.09001 * 109.47320 * 319.99598 * 10 9 4 38 38 H 1.09000 * 109.88811 * 242.66270 * 12 11 10 39 39 H 1.08992 * 109.89099 * 3.85671 * 12 11 10 40 40 H 1.09001 * 110.70158 * 140.66198 * 13 12 11 41 41 H 1.08998 * 110.71063 * 263.72376 * 13 12 11 42 42 H 0.96699 * 113.99575 * 61.45051 * 15 14 13 43 43 H 0.97008 * 119.99797 * 180.02562 * 19 18 16 44 44 H 1.08993 * 110.37451 * 332.46343 * 24 11 10 45 45 H 1.09010 * 110.37283 * 94.80301 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 1.6936 -0.2413 -2.4862 6 6 2.1579 -0.8901 -3.6148 7 6 2.9532 -2.0140 -3.4880 8 6 3.2879 -2.4857 -2.2327 9 6 2.8270 -1.8340 -1.1037 10 6 3.1915 -2.3486 0.2649 11 7 2.0703 -3.1249 0.8109 12 6 1.9016 -4.3947 0.0807 13 6 1.9920 -5.5339 1.1178 14 6 1.6387 -4.8223 2.4504 15 8 0.2232 -4.7118 2.6122 16 6 2.2594 -5.5352 3.6241 17 1 2.9741 -5.0226 4.2508 18 6 1.9146 -6.8419 3.8977 19 7 1.0440 -7.4658 3.1347 20 14 2.6834 -7.7254 5.3530 21 1 1.8453 -7.5126 6.5603 22 1 2.7699 -9.1787 5.0604 23 1 4.0461 -7.1872 5.5953 24 6 2.2838 -3.4295 2.2418 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.0693 0.6345 -2.5853 33 1 1.8967 -0.5213 -4.5956 34 1 3.3132 -2.5230 -4.3699 35 1 3.9088 -3.3638 -2.1336 36 1 4.0726 -2.9860 0.1907 37 1 3.4062 -1.5074 0.9241 38 1 0.9275 -4.4147 -0.4081 39 1 2.6932 -4.5043 -0.6604 40 1 1.2667 -6.3164 0.8948 41 1 3.0012 -5.9442 1.1526 42 1 -0.2359 -5.5620 2.6496 43 1 0.8012 -8.3851 3.3275 44 1 3.3496 -3.4673 2.4668 45 1 1.7895 -2.6850 2.8661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848919888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:22 Heat of formation + Delta-G solvation = -33.333140 kcal Electronic energy + Delta-G solvation = -23916.568920 eV Core-core repulsion = 20705.112099 eV Total energy + Delta-G solvation = -3211.456821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.84155 -38.05247 -35.20496 -34.78506 -32.12371 -31.81713 -29.71545 -28.91192 -28.01746 -26.95648 -25.48731 -23.94820 -23.31214 -21.27215 -20.12146 -19.51630 -19.34907 -17.02157 -16.39777 -15.75854 -15.08815 -14.87482 -14.77537 -14.56033 -13.99476 -13.79977 -13.56396 -13.34347 -13.19961 -12.58378 -12.46923 -12.29308 -12.19272 -11.89893 -11.82443 -11.61923 -11.23373 -11.21329 -11.11992 -10.95711 -10.87770 -10.73227 -10.44070 -10.41889 -10.23809 -10.13063 -9.80252 -9.18510 -8.65072 -8.58778 -8.40265 -8.04344 -7.56099 -6.20049 -4.28320 1.53734 1.56611 3.22332 3.29497 3.32258 3.89691 4.30167 4.77765 4.83676 4.96117 5.05054 5.09095 5.18653 5.26470 5.39507 5.44833 5.58435 5.65879 5.72635 5.76733 5.81360 5.85949 5.95241 5.99822 6.03168 6.13624 6.15051 6.19819 6.23673 6.29481 6.44156 6.50979 6.55163 6.65228 6.67479 6.71333 6.90303 6.95455 7.10827 7.19040 7.43775 7.51480 7.67520 7.78755 7.84530 8.18680 8.74037 9.40419 9.54012 10.86729 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.004215 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.421814 B = 6640.757183 C = 7113.203129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 C -0.143 4.143 4 C -0.050 4.050 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.129 4.129 8 C -0.112 4.112 9 C -0.065 4.065 10 C 0.084 3.916 11 N -0.516 5.516 12 C 0.046 3.954 13 C -0.144 4.144 14 C 0.253 3.747 15 O -0.579 6.579 16 C -0.537 4.537 17 H 0.060 0.940 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.058 3.942 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.376 0.624 43 H 0.266 0.734 44 H 0.045 0.955 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.663 12.133 -10.379 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 C -0.200 4.200 4 C -0.051 4.051 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.147 4.147 8 C -0.131 4.131 9 C -0.065 4.065 10 C -0.044 4.044 11 N -0.240 5.240 12 C -0.081 4.081 13 C -0.183 4.183 14 C 0.213 3.787 15 O -0.386 6.386 16 C -0.575 4.575 17 H 0.078 0.922 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.069 4.069 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.225 0.775 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.278 12.911 -10.456 16.770 hybrid contribution 1.067 -1.814 0.671 2.209 sum 3.345 11.098 -9.785 15.169 Atomic orbital electron populations 1.21753 0.94211 1.02690 1.00705 1.20177 0.96278 0.94910 0.96466 1.21876 1.00821 0.95887 1.01462 1.19679 0.95968 0.94897 0.94546 1.20921 1.00589 1.00231 0.92074 1.21024 0.98802 0.96424 0.98157 1.21016 0.99500 0.97124 0.97062 1.21056 1.00411 0.99377 0.92235 1.19737 0.97177 0.94745 0.94850 1.21209 0.92822 0.97879 0.92478 1.63652 1.38281 1.18718 1.03342 1.22820 0.99780 0.89268 0.96256 1.23256 1.01383 0.97076 0.96613 1.19501 0.79671 0.88446 0.91079 1.86144 1.20775 1.35469 1.96228 1.21556 1.25549 0.97388 1.13011 0.92171 1.24991 0.94580 0.97133 0.96314 1.69743 1.32867 1.12554 1.38191 0.86500 0.79708 0.78600 0.82623 1.20428 1.21136 1.19861 1.23009 0.98144 0.98691 0.87059 0.92817 0.91585 0.93517 0.88993 0.92560 0.92967 0.92959 0.86555 0.86698 0.86625 0.86539 0.94470 0.90393 0.91958 0.94549 0.90566 0.92796 0.77486 0.92416 0.93627 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.00 37.16 0.33 -1.44 16 2 C -0.06 -0.79 2.89 -91.77 -0.26 -1.05 16 3 C -0.14 -1.55 9.01 37.16 0.33 -1.21 16 4 C -0.05 -0.70 4.78 -104.62 -0.50 -1.20 16 5 C -0.12 -1.50 8.71 -39.58 -0.34 -1.85 16 6 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 7 C -0.13 -1.60 10.05 -39.58 -0.40 -1.99 16 8 C -0.11 -1.56 8.83 -39.58 -0.35 -1.91 16 9 C -0.06 -0.97 4.94 -104.62 -0.52 -1.48 16 10 C 0.08 1.35 3.82 -4.98 -0.02 1.33 16 11 N -0.52 -9.87 5.00 -232.69 -1.16 -11.04 16 12 C 0.05 0.93 6.40 -2.84 -0.02 0.91 16 13 C -0.14 -3.34 5.37 -24.91 -0.13 -3.47 16 14 C 0.25 6.27 0.87 -89.63 -0.08 6.19 16 15 O -0.58 -15.17 13.16 -35.23 -0.46 -15.64 16 16 C -0.54 -14.35 8.27 -34.44 -0.28 -14.63 16 17 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 18 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 19 N -0.89 -23.90 10.75 55.43 0.60 -23.30 16 20 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 24 C 0.06 1.25 5.86 -2.30 -0.01 1.23 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.54 7.37 -51.93 -0.38 0.15 16 28 H 0.09 1.36 5.57 -51.93 -0.29 1.07 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.51 7.41 -51.93 -0.38 0.13 16 32 H 0.12 1.25 7.10 -52.48 -0.37 0.88 16 33 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.53 7.65 -52.49 -0.40 1.13 16 36 H 0.04 0.60 7.82 -51.93 -0.41 0.19 16 37 H 0.08 1.18 6.63 -51.93 -0.34 0.84 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.04 0.66 6.20 -51.93 -0.32 0.34 16 40 H 0.08 1.89 7.53 -51.93 -0.39 1.49 16 41 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 42 H 0.38 9.96 7.56 45.56 0.34 10.31 16 43 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 45 H 0.07 1.53 8.14 -51.92 -0.42 1.11 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -27.39 351.55 -10.19 -37.58 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.69 Total: 12.16 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -2.74 Total: -20.66 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: -0.57 Total: -34.34 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.46 Total: -15.64 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.39 -10.19 -37.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848919888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.247 kcal (2) G-P(sol) polarization free energy of solvation -27.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds