Wall clock time and date at job start Tue Mar 31 2020 06:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.38256 * 120.00041 * 59.72148 * 4 2 1 6 6 C 1.38212 * 120.00130 * 179.79009 * 5 4 2 7 7 C 1.38262 * 119.99662 * 0.46335 * 6 5 4 8 8 C 1.38211 * 120.00108 * 359.76977 * 7 6 5 9 9 C 1.38211 * 119.99628 * 239.99756 * 4 2 1 10 10 C 1.50694 * 120.00207 * 359.97438 * 9 4 2 11 11 N 1.46901 * 109.47482 * 80.00156 * 10 9 4 12 12 C 1.47439 * 111.00212 * 69.86931 * 11 10 9 13 13 C 1.54321 * 107.23000 * 123.25985 * 12 11 10 14 14 C 1.55143 * 103.02038 * 22.28643 * 13 12 11 15 15 O 1.42900 * 110.99397 * 82.43447 * 14 13 12 16 16 C 1.50700 * 110.99198 * 206.21877 * 14 13 12 17 17 H 1.07994 * 120.00272 * 118.54187 * 16 14 13 18 18 C 1.37886 * 119.99276 * 298.54465 * 16 14 13 19 19 N 1.31511 * 120.00150 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99524 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47152 * 89.99498 * 20 18 16 22 22 H 1.48497 * 109.47029 * 209.99771 * 20 18 16 23 23 H 1.48504 * 109.46863 * 329.99802 * 20 18 16 24 24 C 1.47845 * 110.99886 * 190.71710 * 11 10 9 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.08006 * 120.00193 * 0.02562 * 5 4 2 33 33 H 1.07994 * 120.00232 * 180.25241 * 6 5 4 34 34 H 1.08002 * 119.99621 * 179.78909 * 7 6 5 35 35 H 1.08000 * 120.00372 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.47189 * 199.99614 * 10 9 4 37 37 H 1.09001 * 109.47320 * 319.99598 * 10 9 4 38 38 H 1.09000 * 109.88811 * 242.66270 * 12 11 10 39 39 H 1.08992 * 109.89099 * 3.85671 * 12 11 10 40 40 H 1.09001 * 110.70158 * 140.66198 * 13 12 11 41 41 H 1.08998 * 110.71063 * 263.72376 * 13 12 11 42 42 H 0.96699 * 113.99575 * 61.45051 * 15 14 13 43 43 H 0.97008 * 119.99797 * 180.02562 * 19 18 16 44 44 H 1.08993 * 110.37451 * 332.46343 * 24 11 10 45 45 H 1.09010 * 110.37283 * 94.80301 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 1.6936 -0.2413 -2.4862 6 6 2.1579 -0.8901 -3.6148 7 6 2.9532 -2.0140 -3.4880 8 6 3.2879 -2.4857 -2.2327 9 6 2.8270 -1.8340 -1.1037 10 6 3.1915 -2.3486 0.2649 11 7 2.0703 -3.1249 0.8109 12 6 1.9016 -4.3947 0.0807 13 6 1.9920 -5.5339 1.1178 14 6 1.6387 -4.8223 2.4504 15 8 0.2232 -4.7118 2.6122 16 6 2.2594 -5.5352 3.6241 17 1 2.9741 -5.0226 4.2508 18 6 1.9146 -6.8419 3.8977 19 7 1.0440 -7.4658 3.1347 20 14 2.6834 -7.7254 5.3530 21 1 1.8453 -7.5126 6.5603 22 1 2.7699 -9.1787 5.0604 23 1 4.0461 -7.1872 5.5953 24 6 2.2838 -3.4295 2.2418 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.0693 0.6345 -2.5853 33 1 1.8967 -0.5213 -4.5956 34 1 3.3132 -2.5230 -4.3699 35 1 3.9088 -3.3638 -2.1336 36 1 4.0726 -2.9860 0.1907 37 1 3.4062 -1.5074 0.9241 38 1 0.9275 -4.4147 -0.4081 39 1 2.6932 -4.5043 -0.6604 40 1 1.2667 -6.3164 0.8948 41 1 3.0012 -5.9442 1.1526 42 1 -0.2359 -5.5620 2.6496 43 1 0.8012 -8.3851 3.3275 44 1 3.3496 -3.4673 2.4668 45 1 1.7895 -2.6850 2.8661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848919888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:21 Heat of formation + Delta-G solvation = -49.222075 kcal Electronic energy + Delta-G solvation = -23917.257915 eV Core-core repulsion = 20705.112099 eV Total energy + Delta-G solvation = -3212.145817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99145 -39.66533 -36.57415 -36.16248 -34.18344 -33.18223 -30.83692 -30.31589 -29.84313 -27.89589 -27.10014 -25.60880 -24.30607 -22.50348 -21.52276 -21.40279 -20.47436 -19.01152 -17.47179 -17.04156 -16.88284 -16.61886 -16.13877 -15.86654 -15.69291 -14.89770 -14.67623 -14.53039 -14.40146 -14.14931 -13.95217 -13.81466 -13.38318 -13.19979 -13.12528 -12.95930 -12.92602 -12.74800 -12.68710 -12.47818 -12.27917 -12.24436 -11.99002 -11.93786 -11.68354 -11.39606 -11.20543 -11.06743 -10.60544 -10.09193 -9.63562 -9.42169 -9.12350 -8.21806 -6.37955 0.52178 0.58207 1.39511 1.41651 1.50645 2.37464 2.84829 3.02860 3.33763 3.78339 3.91535 3.97567 4.02588 4.10862 4.18967 4.26174 4.36633 4.40351 4.43821 4.48347 4.59596 4.64016 4.70324 4.76523 4.81169 4.86793 4.91175 5.04116 5.04858 5.07238 5.19808 5.23242 5.28245 5.32170 5.44698 5.47699 5.51366 5.54024 5.67369 5.69397 5.79549 5.91187 5.99079 6.19586 6.24656 6.29747 6.68032 7.33807 7.45220 8.83347 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.004215 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.421814 B = 6640.757183 C = 7113.203129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 C -0.137 4.137 4 C -0.061 4.061 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.133 4.133 8 C -0.125 4.125 9 C -0.087 4.087 10 C 0.088 3.912 11 N -0.515 5.515 12 C 0.060 3.940 13 C -0.134 4.134 14 C 0.237 3.763 15 O -0.587 6.587 16 C -0.563 4.563 17 H 0.055 0.945 18 C 0.032 3.968 19 N -0.911 5.911 20 Si 0.959 3.041 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.270 1.270 24 C 0.067 3.933 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.118 0.882 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.371 0.629 43 H 0.268 0.732 44 H 0.050 0.950 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 13.393 -11.684 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 C -0.194 4.194 4 C -0.062 4.062 5 C -0.142 4.142 6 C -0.140 4.140 7 C -0.151 4.151 8 C -0.143 4.143 9 C -0.088 4.088 10 C -0.039 4.039 11 N -0.239 5.239 12 C -0.068 4.068 13 C -0.174 4.174 14 C 0.197 3.803 15 O -0.395 6.395 16 C -0.601 4.601 17 H 0.073 0.927 18 C -0.169 4.169 19 N -0.550 5.550 20 Si 0.784 3.216 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.195 1.195 24 C -0.060 4.060 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.136 0.864 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.219 0.781 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.840 14.185 -11.770 18.650 hybrid contribution 0.873 -2.179 1.027 2.562 sum 3.713 12.006 -10.743 16.533 Atomic orbital electron populations 1.21704 0.94278 1.00999 1.01913 1.20142 0.96145 0.96175 0.95373 1.21819 1.00766 0.94296 1.02520 1.19838 0.95988 0.94814 0.95513 1.21185 1.00589 1.00860 0.91603 1.21410 0.97587 0.95728 0.99316 1.21324 0.99204 0.97364 0.97160 1.21197 1.00762 0.99628 0.92762 1.19685 0.98967 0.95911 0.94190 1.21211 0.91563 0.97506 0.93653 1.63591 1.40172 1.18159 1.01993 1.22645 1.00071 0.88442 0.95662 1.23054 0.99873 0.97378 0.97051 1.19745 0.78853 0.90413 0.91285 1.86138 1.21807 1.35159 1.96352 1.21832 1.26087 0.98159 1.14003 0.92723 1.25682 0.94954 0.97680 0.98590 1.69834 1.33309 1.12738 1.39131 0.85556 0.78937 0.77551 0.79555 1.20229 1.20584 1.19475 1.22837 0.97853 0.96714 0.88623 0.92218 0.94618 0.91708 0.91279 0.91811 0.92999 0.91577 0.84597 0.83811 0.84356 0.86405 0.94500 0.89740 0.92783 0.92599 0.92695 0.93825 0.78127 0.92255 0.93218 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.00 71.98 0.65 -2.66 16 2 C -0.06 -1.51 2.89 -11.54 -0.03 -1.55 16 3 C -0.14 -2.68 9.01 71.98 0.65 -2.03 16 4 C -0.06 -1.61 4.78 -19.86 -0.09 -1.71 16 5 C -0.12 -2.77 8.71 22.27 0.19 -2.58 16 6 C -0.12 -2.50 10.05 22.27 0.22 -2.27 16 7 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 8 C -0.12 -3.29 8.83 22.27 0.20 -3.09 16 9 C -0.09 -2.52 4.94 -19.87 -0.10 -2.62 16 10 C 0.09 2.81 3.82 85.55 0.33 3.14 16 11 N -0.52 -19.86 5.00 -890.11 -4.45 -24.31 16 12 C 0.06 2.40 6.40 86.65 0.55 2.95 16 13 C -0.13 -6.37 5.37 31.78 0.17 -6.20 16 14 C 0.24 12.00 0.87 -10.15 -0.01 11.99 16 15 O -0.59 -31.70 13.16 -148.98 -1.96 -33.66 16 16 C -0.56 -30.59 8.27 25.60 0.21 -30.37 16 17 H 0.05 2.95 7.79 -2.91 -0.02 2.93 16 18 C 0.03 1.69 5.29 84.66 0.45 2.14 16 19 N -0.91 -49.36 10.75 21.45 0.23 -49.13 16 20 Si 0.96 42.40 29.54 68.60 2.03 44.42 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 24 C 0.07 2.94 5.86 86.77 0.51 3.44 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.36 7.37 -2.38 -0.02 1.34 16 28 H 0.07 2.05 5.57 -2.39 -0.01 2.03 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.11 7.41 -2.39 -0.02 1.09 16 32 H 0.14 2.43 7.10 -2.91 -0.02 2.41 16 33 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.12 2.97 7.65 -2.91 -0.02 2.95 16 36 H 0.04 1.17 7.82 -2.39 -0.02 1.15 16 37 H 0.08 2.55 6.63 -2.39 -0.02 2.54 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.06 2.02 6.20 -2.39 -0.01 2.00 16 40 H 0.05 2.80 7.53 -2.39 -0.02 2.78 16 41 H 0.04 2.11 8.04 -2.39 -0.02 2.09 16 42 H 0.37 20.33 7.56 -74.06 -0.56 19.77 16 43 H 0.27 13.84 8.31 -92.70 -0.77 13.07 16 44 H 0.05 2.10 7.70 -2.39 -0.02 2.08 16 45 H 0.06 2.86 8.14 -2.38 -0.02 2.84 16 Total: -1.00 -58.68 351.55 0.37 -58.31 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: 0.41 Total: 38.49 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 4.12 Total: -34.13 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -4.22 Total: -73.44 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.96 Total: -33.66 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -58.68 0.37 -58.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848919888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.088 kcal (2) G-P(sol) polarization free energy of solvation -58.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds