Wall clock time and date at job start Tue Mar 31 2020 06:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47487 * 2 1 4 4 C 1.50705 * 109.46855 * 120.00615 * 2 1 3 5 5 C 1.38260 * 119.99818 * 304.72310 * 4 2 1 6 6 C 1.38208 * 119.99533 * 180.23777 * 5 4 2 7 7 C 1.38261 * 120.00261 * 359.80739 * 6 5 4 8 8 C 1.38211 * 119.99729 * 359.97438 * 7 6 5 9 9 C 1.38210 * 119.99704 * 124.51817 * 4 2 1 10 10 C 1.50693 * 120.00361 * 359.97438 * 9 4 2 11 11 N 1.46903 * 109.47485 * 284.73769 * 10 9 4 12 12 C 1.47443 * 111.00150 * 284.02512 * 11 10 9 13 13 C 1.54319 * 107.23091 * 236.73771 * 12 11 10 14 14 C 1.55134 * 103.17641 * 337.62961 * 13 12 11 15 15 O 1.42902 * 110.99089 * 277.64912 * 14 13 12 16 16 C 1.50701 * 110.99210 * 153.83209 * 14 13 12 17 17 H 1.08000 * 119.99680 * 4.19105 * 16 14 13 18 18 C 1.37880 * 120.00333 * 184.19092 * 16 14 13 19 19 N 1.31509 * 119.99735 * 184.09957 * 18 16 14 20 20 Si 1.86800 * 119.99710 * 4.09524 * 18 16 14 21 21 H 1.48508 * 109.46879 * 92.75546 * 20 18 16 22 22 H 1.48501 * 109.47095 * 212.75579 * 20 18 16 23 23 H 1.48496 * 109.47411 * 332.76030 * 20 18 16 24 24 C 1.47841 * 111.00268 * 163.17557 * 11 10 9 25 25 H 1.09003 * 109.46811 * 299.99992 * 1 2 3 26 26 H 1.08997 * 109.47030 * 59.99483 * 1 2 3 27 27 H 1.08994 * 109.47470 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46811 * 240.00008 * 2 1 3 29 29 H 1.08994 * 109.46888 * 174.98068 * 3 2 1 30 30 H 1.08993 * 109.47102 * 294.98783 * 3 2 1 31 31 H 1.09006 * 109.46656 * 54.98604 * 3 2 1 32 32 H 1.07996 * 119.99836 * 0.06542 * 5 4 2 33 33 H 1.08001 * 119.99504 * 179.83435 * 6 5 4 34 34 H 1.08003 * 119.99724 * 179.97438 * 7 6 5 35 35 H 1.07998 * 119.99275 * 179.97438 * 8 7 6 36 36 H 1.09001 * 109.47170 * 164.73897 * 10 9 4 37 37 H 1.09001 * 109.47202 * 44.73916 * 10 9 4 38 38 H 1.08999 * 109.88854 * 117.33128 * 12 11 10 39 39 H 1.09001 * 109.88853 * 356.14496 * 12 11 10 40 40 H 1.09001 * 110.70091 * 96.09724 * 13 12 11 41 41 H 1.09000 * 110.70428 * 219.15310 * 13 12 11 42 42 H 0.96699 * 113.99776 * 298.54703 * 15 14 13 43 43 H 0.97000 * 119.99461 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.37596 * 265.19852 * 24 11 10 45 45 H 1.09001 * 110.37271 * 27.42914 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 1.6197 -0.2979 2.4839 6 6 2.0842 -0.9465 3.6125 7 6 2.9584 -2.0104 3.4879 8 6 3.3673 -2.4257 2.2347 9 6 2.9021 -1.7774 1.1056 10 6 3.3478 -2.2304 -0.2607 11 7 2.2563 -2.9660 -0.9130 12 6 2.1254 -4.3237 -0.3530 13 6 2.2598 -5.3171 -1.5263 14 6 1.8896 -4.4562 -2.7626 15 8 0.4720 -4.3724 -2.9221 16 6 2.5400 -4.9957 -4.0104 17 1 3.1115 -5.9112 -3.9689 18 6 2.4056 -4.3205 -5.2051 19 7 2.9043 -4.8321 -6.3092 20 14 1.5149 -2.6793 -5.2552 21 1 2.4980 -1.5776 -5.0961 22 1 0.8161 -2.5350 -6.5575 23 1 0.5229 -2.6205 -4.1518 24 6 2.4883 -3.0776 -2.3688 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1263 1.4437 0.0899 30 1 1.7520 1.9297 -0.9314 31 1 1.6053 1.9815 0.8417 32 1 0.9366 0.5329 2.5811 33 1 1.7639 -0.6224 4.5917 34 1 3.3216 -2.5169 4.3699 35 1 4.0504 -3.2565 2.1375 36 1 4.2166 -2.8813 -0.1623 37 1 3.6114 -1.3614 -0.8636 38 1 1.1497 -4.4375 0.1194 39 1 2.9159 -4.5018 0.3761 40 1 3.2831 -5.6844 -1.6049 41 1 1.5619 -6.1463 -1.4110 42 1 0.0417 -5.2257 -3.0695 43 1 2.8094 -4.3573 -7.1497 44 1 1.9733 -2.2756 -2.8978 45 1 3.5561 -3.0500 -2.5861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848919889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:25 Heat of formation + Delta-G solvation = -20.768604 kcal Electronic energy + Delta-G solvation = -24212.729108 eV Core-core repulsion = 21001.817126 eV Total energy + Delta-G solvation = -3210.911982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.91766 -38.35311 -35.25700 -35.00921 -32.36366 -32.02076 -29.82518 -29.24484 -28.35036 -26.98705 -25.58178 -23.88255 -23.34959 -21.45461 -20.39608 -19.69738 -19.43648 -17.23252 -16.46584 -15.87443 -15.43067 -15.06814 -14.86818 -14.49357 -13.99922 -13.95225 -13.68200 -13.42083 -13.26378 -12.79191 -12.60728 -12.51521 -12.32656 -12.19276 -11.95320 -11.82145 -11.57361 -11.31480 -11.26000 -11.11658 -10.97290 -10.63338 -10.50712 -10.38092 -10.23130 -10.15903 -9.84300 -8.94283 -8.71464 -8.67424 -8.47847 -8.28867 -7.72981 -6.18460 -4.29571 1.47329 1.50684 3.33372 3.45156 3.69451 3.83237 4.46758 4.60800 4.80137 4.91226 4.99191 5.09588 5.13668 5.23316 5.33917 5.37046 5.40896 5.47108 5.55665 5.61876 5.67879 5.73723 5.80788 5.85192 5.92153 5.93864 5.99409 6.11959 6.16996 6.23153 6.25235 6.32598 6.41265 6.48811 6.52355 6.59468 6.63050 6.72503 6.81696 6.90795 7.12691 7.15440 7.41262 7.61861 7.66654 8.25031 8.78666 9.02673 9.46654 10.92130 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.005404 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.222696 B = 5180.428829 C = 5942.374146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.047 4.047 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.129 4.129 8 C -0.113 4.113 9 C -0.066 4.066 10 C 0.082 3.918 11 N -0.518 5.518 12 C 0.053 3.947 13 C -0.157 4.157 14 C 0.222 3.778 15 O -0.565 6.565 16 C -0.551 4.551 17 H 0.075 0.925 18 C 0.088 3.912 19 N -0.891 5.891 20 Si 0.866 3.134 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.216 1.216 24 C 0.050 3.950 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.042 0.958 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.359 0.641 43 H 0.266 0.734 44 H 0.072 0.928 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 8.527 16.958 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C -0.200 4.200 4 C -0.047 4.047 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.147 4.147 8 C -0.132 4.132 9 C -0.067 4.067 10 C -0.046 4.046 11 N -0.242 5.242 12 C -0.075 4.075 13 C -0.196 4.196 14 C 0.181 3.819 15 O -0.371 6.371 16 C -0.589 4.589 17 H 0.093 0.907 18 C -0.117 4.117 19 N -0.527 5.527 20 Si 0.694 3.306 21 H -0.214 1.214 22 H -0.225 1.225 23 H -0.139 1.139 24 C -0.077 4.077 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.205 0.795 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.631 9.468 16.951 19.484 hybrid contribution 0.443 -0.311 -0.362 0.651 sum -1.188 9.157 16.588 18.985 Atomic orbital electron populations 1.21753 0.94322 1.02465 1.00782 1.20211 0.96249 0.95053 0.96636 1.21861 1.00884 0.95775 1.01499 1.19679 0.95491 0.95061 0.94498 1.20940 1.00485 1.00294 0.92068 1.21033 0.98384 0.96760 0.98172 1.21010 0.98915 0.97760 0.97062 1.21030 1.00377 0.99547 0.92219 1.19740 0.97031 0.95196 0.94686 1.21237 0.92660 0.98538 0.92119 1.63630 1.40729 1.15690 1.04109 1.22718 1.00382 0.87932 0.96465 1.23331 1.01563 0.98203 0.96456 1.20074 0.79689 0.90003 0.92087 1.86549 1.21560 1.34126 1.94824 1.21299 1.34674 1.11322 0.91557 0.90695 1.24982 0.93664 0.97945 0.95122 1.69944 1.44763 1.38863 0.99138 0.87184 0.81798 0.83111 0.78531 1.21411 1.22526 1.13898 1.23521 0.99171 0.99146 0.85854 0.93431 0.92798 0.91823 0.88781 0.92902 0.92520 0.92948 0.86515 0.86675 0.86616 0.86562 0.93979 0.90308 0.91502 0.93982 0.91500 0.91871 0.79507 0.92492 0.91008 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.95 37.16 0.33 -1.45 16 2 C -0.06 -0.86 2.83 -91.77 -0.26 -1.12 16 3 C -0.14 -1.64 8.99 37.16 0.33 -1.30 16 4 C -0.05 -0.64 4.78 -104.62 -0.50 -1.14 16 5 C -0.12 -1.46 8.81 -39.58 -0.35 -1.81 16 6 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 7 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 8 C -0.11 -1.46 9.34 -39.58 -0.37 -1.83 16 9 C -0.07 -0.95 5.07 -104.63 -0.53 -1.48 16 10 C 0.08 1.29 3.81 -4.98 -0.02 1.27 16 11 N -0.52 -9.44 4.54 -232.38 -1.06 -10.50 16 12 C 0.05 0.92 6.53 -2.84 -0.02 0.90 16 13 C -0.16 -3.04 6.10 -24.91 -0.15 -3.19 16 14 C 0.22 5.04 0.69 -89.38 -0.06 4.98 16 15 O -0.57 -12.77 10.40 -35.23 -0.37 -13.13 16 16 C -0.55 -14.93 8.88 -34.44 -0.31 -15.24 16 17 H 0.07 2.20 8.03 -52.49 -0.42 1.78 16 18 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 19 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 20 Si 0.87 21.61 24.30 -169.99 -4.13 17.48 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 23 H -0.22 -5.32 5.03 56.52 0.28 -5.03 16 24 C 0.05 1.07 4.62 -2.05 -0.01 1.06 16 25 H 0.05 0.54 7.14 -51.93 -0.37 0.17 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.49 5.48 -51.93 -0.28 1.21 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.53 7.86 -51.93 -0.41 0.13 16 32 H 0.12 1.23 7.17 -52.49 -0.38 0.85 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.12 1.37 8.00 -52.49 -0.42 0.95 16 36 H 0.04 0.64 7.57 -51.93 -0.39 0.25 16 37 H 0.08 1.22 6.92 -51.93 -0.36 0.86 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.04 0.66 7.03 -51.93 -0.37 0.30 16 40 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.36 7.07 9.11 45.56 0.41 7.48 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.07 1.63 4.82 -51.93 -0.25 1.38 16 45 H 0.06 1.23 7.71 -51.93 -0.40 0.83 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -30.22 345.58 -9.06 -39.28 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.69 Total: 9.32 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.80 Total: -21.67 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.28 Total: -36.48 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.37 Total: -13.13 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.13 Total: 17.48 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.22 -9.06 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848919889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.508 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds