Wall clock time and date at job start Tue Mar 31 2020 06:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47487 * 2 1 4 4 C 1.50705 * 109.46855 * 120.00615 * 2 1 3 5 5 C 1.38260 * 119.99818 * 304.72310 * 4 2 1 6 6 C 1.38208 * 119.99533 * 180.23777 * 5 4 2 7 7 C 1.38261 * 120.00261 * 359.80739 * 6 5 4 8 8 C 1.38211 * 119.99729 * 359.97438 * 7 6 5 9 9 C 1.38210 * 119.99704 * 124.51817 * 4 2 1 10 10 C 1.50693 * 120.00361 * 359.97438 * 9 4 2 11 11 N 1.46903 * 109.47485 * 284.73769 * 10 9 4 12 12 C 1.47443 * 111.00150 * 284.02512 * 11 10 9 13 13 C 1.54319 * 107.23091 * 236.73771 * 12 11 10 14 14 C 1.55134 * 103.17641 * 337.62961 * 13 12 11 15 15 O 1.42902 * 110.99089 * 277.64912 * 14 13 12 16 16 C 1.50701 * 110.99210 * 153.83209 * 14 13 12 17 17 H 1.08000 * 119.99680 * 4.19105 * 16 14 13 18 18 C 1.37880 * 120.00333 * 184.19092 * 16 14 13 19 19 N 1.31509 * 119.99735 * 184.09957 * 18 16 14 20 20 Si 1.86800 * 119.99710 * 4.09524 * 18 16 14 21 21 H 1.48508 * 109.46879 * 92.75546 * 20 18 16 22 22 H 1.48501 * 109.47095 * 212.75579 * 20 18 16 23 23 H 1.48496 * 109.47411 * 332.76030 * 20 18 16 24 24 C 1.47841 * 111.00268 * 163.17557 * 11 10 9 25 25 H 1.09003 * 109.46811 * 299.99992 * 1 2 3 26 26 H 1.08997 * 109.47030 * 59.99483 * 1 2 3 27 27 H 1.08994 * 109.47470 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46811 * 240.00008 * 2 1 3 29 29 H 1.08994 * 109.46888 * 174.98068 * 3 2 1 30 30 H 1.08993 * 109.47102 * 294.98783 * 3 2 1 31 31 H 1.09006 * 109.46656 * 54.98604 * 3 2 1 32 32 H 1.07996 * 119.99836 * 0.06542 * 5 4 2 33 33 H 1.08001 * 119.99504 * 179.83435 * 6 5 4 34 34 H 1.08003 * 119.99724 * 179.97438 * 7 6 5 35 35 H 1.07998 * 119.99275 * 179.97438 * 8 7 6 36 36 H 1.09001 * 109.47170 * 164.73897 * 10 9 4 37 37 H 1.09001 * 109.47202 * 44.73916 * 10 9 4 38 38 H 1.08999 * 109.88854 * 117.33128 * 12 11 10 39 39 H 1.09001 * 109.88853 * 356.14496 * 12 11 10 40 40 H 1.09001 * 110.70091 * 96.09724 * 13 12 11 41 41 H 1.09000 * 110.70428 * 219.15310 * 13 12 11 42 42 H 0.96699 * 113.99776 * 298.54703 * 15 14 13 43 43 H 0.97000 * 119.99461 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.37596 * 265.19852 * 24 11 10 45 45 H 1.09001 * 110.37271 * 27.42914 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 1.6197 -0.2979 2.4839 6 6 2.0842 -0.9465 3.6125 7 6 2.9584 -2.0104 3.4879 8 6 3.3673 -2.4257 2.2347 9 6 2.9021 -1.7774 1.1056 10 6 3.3478 -2.2304 -0.2607 11 7 2.2563 -2.9660 -0.9130 12 6 2.1254 -4.3237 -0.3530 13 6 2.2598 -5.3171 -1.5263 14 6 1.8896 -4.4562 -2.7626 15 8 0.4720 -4.3724 -2.9221 16 6 2.5400 -4.9957 -4.0104 17 1 3.1115 -5.9112 -3.9689 18 6 2.4056 -4.3205 -5.2051 19 7 2.9043 -4.8321 -6.3092 20 14 1.5149 -2.6793 -5.2552 21 1 2.4980 -1.5776 -5.0961 22 1 0.8161 -2.5350 -6.5575 23 1 0.5229 -2.6205 -4.1518 24 6 2.4883 -3.0776 -2.3688 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1263 1.4437 0.0899 30 1 1.7520 1.9297 -0.9314 31 1 1.6053 1.9815 0.8417 32 1 0.9366 0.5329 2.5811 33 1 1.7639 -0.6224 4.5917 34 1 3.3216 -2.5169 4.3699 35 1 4.0504 -3.2565 2.1375 36 1 4.2166 -2.8813 -0.1623 37 1 3.6114 -1.3614 -0.8636 38 1 1.1497 -4.4375 0.1194 39 1 2.9159 -4.5018 0.3761 40 1 3.2831 -5.6844 -1.6049 41 1 1.5619 -6.1463 -1.4110 42 1 0.0417 -5.2257 -3.0695 43 1 2.8094 -4.3573 -7.1497 44 1 1.9733 -2.2756 -2.8978 45 1 3.5561 -3.0500 -2.5861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848919889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:24 Heat of formation + Delta-G solvation = -40.526448 kcal Electronic energy + Delta-G solvation = -24213.585873 eV Core-core repulsion = 21001.817126 eV Total energy + Delta-G solvation = -3211.768746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02980 -39.82473 -36.67319 -36.17047 -34.50255 -33.30783 -30.95841 -30.42451 -30.11336 -27.94008 -27.09197 -25.56841 -24.30462 -22.63017 -21.79742 -21.33458 -20.51639 -19.24154 -17.53101 -17.14599 -17.08451 -16.65059 -16.01241 -15.89876 -15.75106 -14.99733 -14.90307 -14.70329 -14.46125 -14.35308 -14.03827 -13.96381 -13.64811 -13.37453 -13.22531 -13.06973 -12.98402 -12.78979 -12.73727 -12.45382 -12.22214 -12.20571 -11.97024 -11.78859 -11.70386 -11.40453 -11.21020 -10.93371 -10.78899 -10.19818 -9.63699 -9.41651 -9.19221 -8.39517 -6.52489 0.52246 0.58928 1.32210 1.39945 1.67462 2.37027 2.82591 2.98200 3.25776 3.61877 3.78774 3.90291 3.94677 4.04465 4.12702 4.19646 4.29533 4.36228 4.39999 4.41568 4.58374 4.60160 4.63384 4.70499 4.72677 4.80256 4.82924 4.90706 5.00423 5.02242 5.11499 5.18669 5.18937 5.24025 5.30372 5.42506 5.43859 5.47609 5.50410 5.67823 5.70207 5.90854 5.98558 6.11045 6.19434 6.25374 6.59218 7.18285 7.35422 8.74902 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.005404 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.222696 B = 5180.428829 C = 5942.374146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 C -0.138 4.138 4 C -0.058 4.058 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.131 4.131 8 C -0.121 4.121 9 C -0.087 4.087 10 C 0.085 3.915 11 N -0.517 5.517 12 C 0.061 3.939 13 C -0.151 4.151 14 C 0.216 3.784 15 O -0.570 6.570 16 C -0.548 4.548 17 H 0.040 0.960 18 C 0.040 3.960 19 N -0.936 5.936 20 Si 0.926 3.074 21 H -0.282 1.282 22 H -0.303 1.303 23 H -0.210 1.210 24 C 0.056 3.944 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.371 0.629 43 H 0.267 0.733 44 H 0.059 0.941 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 9.981 20.056 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.083 4.083 3 C -0.195 4.195 4 C -0.059 4.059 5 C -0.143 4.143 6 C -0.140 4.140 7 C -0.149 4.149 8 C -0.140 4.140 9 C -0.087 4.087 10 C -0.042 4.042 11 N -0.241 5.241 12 C -0.066 4.066 13 C -0.190 4.190 14 C 0.176 3.824 15 O -0.377 6.377 16 C -0.586 4.586 17 H 0.058 0.942 18 C -0.160 4.160 19 N -0.575 5.575 20 Si 0.752 3.248 21 H -0.208 1.208 22 H -0.230 1.230 23 H -0.132 1.132 24 C -0.072 4.072 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.219 0.781 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.457 10.914 20.072 22.979 hybrid contribution 0.727 -0.834 -1.251 1.670 sum -1.731 10.080 18.822 21.421 Atomic orbital electron populations 1.21707 0.94072 1.01231 1.01840 1.20170 0.96430 0.96033 0.95683 1.21813 1.00741 0.94581 1.02346 1.19766 0.95781 0.95172 0.95174 1.21166 1.00646 1.00839 0.91627 1.21410 0.97400 0.96024 0.99171 1.21331 0.98489 0.97769 0.97288 1.21193 1.00555 0.99771 0.92451 1.19658 0.98602 0.96422 0.94031 1.21224 0.91939 0.98030 0.93017 1.63589 1.42047 1.16234 1.02197 1.22678 1.01385 0.86754 0.95816 1.23245 1.01418 0.98689 0.95634 1.19998 0.79451 0.91526 0.91438 1.86500 1.21109 1.35268 1.94845 1.21584 1.33684 1.09868 0.93501 0.94182 1.25697 0.94545 1.00934 0.94869 1.70059 1.47035 1.40558 0.99872 0.86264 0.80850 0.79564 0.78114 1.20844 1.23036 1.13214 1.23263 0.98048 0.97664 0.88190 0.91382 0.92729 0.94101 0.91597 0.93167 0.92301 0.91297 0.84837 0.83896 0.84171 0.85840 0.93707 0.90823 0.91048 0.91959 0.92227 0.90500 0.78146 0.92408 0.92291 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.95 71.98 0.64 -2.59 16 2 C -0.06 -1.68 2.83 -11.54 -0.03 -1.71 16 3 C -0.14 -2.90 8.99 71.98 0.65 -2.25 16 4 C -0.06 -1.49 4.78 -19.86 -0.10 -1.58 16 5 C -0.12 -2.63 8.81 22.27 0.20 -2.44 16 6 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 7 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 8 C -0.12 -2.83 9.34 22.27 0.21 -2.62 16 9 C -0.09 -2.34 5.07 -19.87 -0.10 -2.44 16 10 C 0.09 2.62 3.81 85.55 0.33 2.94 16 11 N -0.52 -18.41 4.54 -889.11 -4.04 -22.45 16 12 C 0.06 2.03 6.53 86.65 0.57 2.60 16 13 C -0.15 -5.74 6.10 31.77 0.19 -5.55 16 14 C 0.22 9.80 0.69 -9.99 -0.01 9.80 16 15 O -0.57 -25.25 10.40 -148.98 -1.55 -26.80 16 16 C -0.55 -30.41 8.88 25.60 0.23 -30.18 16 17 H 0.04 2.45 8.03 -2.91 -0.02 2.42 16 18 C 0.04 2.30 5.47 84.66 0.46 2.76 16 19 N -0.94 -57.87 13.96 21.45 0.30 -57.57 16 20 Si 0.93 45.60 24.30 68.60 1.67 47.27 16 21 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 22 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 23 H -0.21 -10.03 5.03 99.48 0.50 -9.53 16 24 C 0.06 2.39 4.62 86.94 0.40 2.79 16 25 H 0.07 1.36 7.14 -2.39 -0.02 1.34 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.07 2.07 5.48 -2.39 -0.01 2.06 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.21 7.86 -2.38 -0.02 1.19 16 32 H 0.13 2.30 7.17 -2.91 -0.02 2.28 16 33 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 35 H 0.12 2.61 8.00 -2.91 -0.02 2.59 16 36 H 0.04 1.33 7.57 -2.39 -0.02 1.31 16 37 H 0.07 2.29 6.92 -2.39 -0.02 2.28 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.06 1.82 7.03 -2.39 -0.02 1.81 16 40 H 0.06 2.33 8.03 -2.39 -0.02 2.31 16 41 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.37 14.25 9.11 -74.06 -0.67 13.58 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 44 H 0.06 2.67 4.82 -2.39 -0.01 2.66 16 45 H 0.04 1.98 7.71 -2.39 -0.02 1.96 16 Total: -1.00 -65.57 345.58 0.55 -65.02 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.09 Total: 29.39 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 4.09 Total: -34.85 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.74 Total: -80.02 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.55 Total: -26.80 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.67 Total: 47.27 kcal Total: -65.57 0.55 -65.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848919889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.490 kcal (2) G-P(sol) polarization free energy of solvation -65.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds