Wall clock time and date at job start Tue Mar 31 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00227 * 2 1 4 4 C 1.50699 * 109.46894 * 66.04436 * 3 2 1 5 5 C 1.38299 * 119.92895 * 90.00632 * 4 3 2 6 6 C 1.38100 * 120.06840 * 180.02562 * 5 4 3 7 7 C 1.38882 * 119.93309 * 359.97438 * 6 5 4 8 8 O 1.35741 * 120.06963 * 179.97438 * 7 6 5 9 9 C 1.34832 * 117.00506 * 5.54159 * 8 7 6 10 10 H 1.07999 * 119.99652 * 354.94101 * 9 8 7 11 11 C 1.38651 * 120.00703 * 174.94177 * 9 8 7 12 12 N 1.31557 * 119.99696 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00329 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47082 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46918 * 299.99594 * 13 11 9 16 16 H 1.48496 * 109.47544 * 59.99564 * 13 11 9 17 17 C 1.38882 * 119.86015 * 0.25490 * 7 6 5 18 18 C 1.38101 * 119.92899 * 359.49348 * 17 7 6 19 19 C 1.46900 * 110.99896 * 236.04482 * 2 1 3 20 20 C 1.52994 * 109.47302 * 293.95352 * 19 2 1 21 21 H 1.09005 * 115.55123 * 330.72535 * 20 19 2 22 22 C 1.53004 * 117.49949 * 116.39187 * 20 19 2 23 23 C 1.52997 * 59.99988 * 107.49141 * 22 20 19 24 24 C 1.53002 * 117.49731 * 252.51157 * 23 22 20 25 25 C 1.53002 * 117.49839 * 107.49124 * 23 22 20 26 26 H 1.09000 * 109.47297 * 60.00235 * 1 2 3 27 27 H 1.09003 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47247 * 300.00089 * 1 2 3 29 29 H 1.09005 * 109.46740 * 306.04593 * 3 2 1 30 30 H 1.08998 * 109.47044 * 186.05017 * 3 2 1 31 31 H 1.07995 * 119.96602 * 359.97438 * 5 4 3 32 32 H 1.08001 * 120.03215 * 179.97438 * 6 5 4 33 33 H 0.97004 * 120.00173 * 0.02562 * 12 11 9 34 34 H 1.07999 * 120.03676 * 179.72206 * 17 7 6 35 35 H 1.07997 * 119.96818 * 180.27655 * 18 17 7 36 36 H 1.09000 * 109.47293 * 53.95357 * 19 2 1 37 37 H 1.09004 * 109.47198 * 173.95055 * 19 2 1 38 38 H 1.09002 * 117.49600 * 214.97935 * 22 20 19 39 39 H 1.09000 * 117.49890 * 0.02562 * 22 20 19 40 40 H 1.08998 * 109.47054 * 128.62314 * 24 23 22 41 41 H 1.09006 * 109.46766 * 248.62503 * 24 23 22 42 42 H 1.08995 * 109.47273 * 8.61855 * 24 23 22 43 43 H 1.08997 * 109.47356 * 351.37452 * 25 23 22 44 44 H 1.09001 * 109.47229 * 111.37993 * 25 23 22 45 45 H 1.09003 * 109.47232 * 231.37361 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 6 2.4954 1.9640 2.3796 6 6 2.1694 2.5816 3.5710 7 6 0.9784 3.2872 3.6826 8 8 0.6550 3.8949 4.8525 9 6 1.5829 3.8735 5.8305 10 1 2.4991 3.3184 5.6935 11 6 1.3611 4.5642 7.0121 12 7 0.2453 5.2408 7.1789 13 14 2.6470 4.5350 8.3667 14 1 2.1728 5.3458 9.5169 15 1 2.8710 3.1345 8.8065 16 1 3.9198 5.1021 7.8533 17 6 0.1162 3.3648 2.5966 18 6 0.4503 2.7494 1.4063 19 6 1.9954 -0.7660 -1.1376 20 6 1.6314 -2.2426 -0.9703 21 1 1.5317 -2.5886 0.0585 22 6 0.7062 -2.8652 -2.0179 23 6 2.1921 -3.2291 -1.9967 24 6 3.0739 -2.6634 -3.1118 25 6 2.5703 -4.6261 -1.5005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.5611 1.9273 -0.8310 30 1 3.0797 1.3443 -0.1083 31 1 3.4212 1.4149 2.2923 32 1 2.8400 2.5160 4.4150 33 1 -0.4224 5.2563 6.4753 34 1 -0.8128 3.9089 2.6817 35 1 -0.2176 2.8130 0.5600 36 1 1.5611 -0.3873 -2.0628 37 1 3.0797 -0.6611 -1.1757 38 1 -0.0019 -3.6211 -1.6782 39 1 0.3571 -2.2229 -2.8264 40 1 3.9454 -2.1766 -2.6741 41 1 3.3995 -3.4739 -3.7639 42 1 2.5049 -1.9368 -3.6917 43 1 1.6897 -5.1142 -1.0831 44 1 2.9525 -5.2164 -2.3333 45 1 3.3384 -4.5430 -0.7315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852772869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:37 Heat of formation + Delta-G solvation = 11.170166 kcal Electronic energy + Delta-G solvation = -22300.691343 eV Core-core repulsion = 19091.164330 eV Total energy + Delta-G solvation = -3209.527013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.47571 -38.98497 -37.37859 -35.73716 -32.31669 -30.58280 -30.24397 -29.23999 -28.09565 -27.20976 -26.04940 -24.73667 -22.58489 -21.84947 -20.92890 -20.29903 -18.83955 -18.34500 -16.82190 -15.99674 -15.51748 -15.22954 -14.92595 -14.49627 -14.20205 -13.99947 -13.88943 -13.69765 -13.59932 -13.24145 -13.14128 -12.87619 -12.67282 -12.54662 -12.26374 -12.13140 -11.61138 -11.54636 -11.53268 -11.29240 -11.11832 -10.98383 -10.72548 -10.68821 -10.28311 -10.24413 -9.97033 -9.71016 -9.38120 -8.75419 -8.26987 -8.17675 -7.22167 -6.75646 -4.04598 2.17874 2.25040 3.24937 3.29547 3.46392 3.46548 3.97624 4.13181 4.48019 4.52261 4.60589 4.74296 4.83380 5.08843 5.15904 5.19861 5.23932 5.27260 5.35432 5.36557 5.48184 5.50022 5.58329 5.63026 5.63956 5.65223 5.70257 5.72911 5.74441 5.86057 5.86815 5.88607 6.03290 6.13393 6.15965 6.18165 6.38852 6.64769 6.85313 7.04478 7.10024 7.20494 7.29262 7.38832 7.58900 7.75531 8.41644 8.93716 9.62861 10.68378 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.002698 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.977797 B =10376.684954 C =10806.286566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.534 5.534 3 C 0.113 3.887 4 C -0.176 4.176 5 C -0.049 4.049 6 C -0.231 4.231 7 C 0.158 3.842 8 O -0.203 6.203 9 C -0.471 4.471 10 H 0.084 0.916 11 C 0.009 3.991 12 N -0.882 5.882 13 Si 1.096 2.904 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.281 1.281 17 C -0.197 4.197 18 C -0.067 4.067 19 C 0.087 3.913 20 C -0.133 4.133 21 H 0.112 0.888 22 C -0.176 4.176 23 C -0.129 4.129 24 C -0.115 4.115 25 C -0.114 4.114 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.282 0.718 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.058 -14.377 -18.259 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.258 5.258 3 C -0.014 4.014 4 C -0.177 4.177 5 C -0.068 4.068 6 C -0.250 4.250 7 C 0.105 3.895 8 O -0.108 6.108 9 C -0.547 4.547 10 H 0.101 0.899 11 C -0.196 4.196 12 N -0.514 5.514 13 Si 0.920 3.080 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.216 4.216 18 C -0.086 4.086 19 C -0.041 4.041 20 C -0.151 4.151 21 H 0.130 0.870 22 C -0.213 4.213 23 C -0.130 4.130 24 C -0.172 4.172 25 C -0.171 4.171 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.338 -13.887 -16.180 21.759 hybrid contribution -0.627 -0.291 -2.334 2.434 sum 3.712 -14.178 -18.513 23.612 Atomic orbital electron populations 1.22410 0.87431 1.01613 1.00828 1.62002 1.08145 1.13827 1.41851 1.20800 0.99241 0.86894 0.94431 1.19076 0.97423 1.05445 0.95747 1.20574 0.97917 0.96360 0.91977 1.21171 0.99549 1.05173 0.99125 1.19240 0.92559 0.91372 0.86350 1.83659 1.41854 1.66433 1.18818 1.22203 1.00470 1.36311 0.95730 0.89886 1.26534 1.01672 0.93186 0.98186 1.70575 1.07302 1.36926 1.36608 0.83110 0.73262 0.77012 0.74656 1.19800 1.20715 1.20748 1.20144 1.01295 1.07913 0.92252 1.20471 0.95573 0.96557 0.96018 1.21633 0.99780 0.91187 0.91470 1.22456 1.03208 0.93400 0.96069 0.86993 1.23330 0.92432 1.03619 1.01907 1.21600 0.95381 0.96277 0.99712 1.21330 0.98970 1.00456 0.96421 1.21341 1.01431 0.93486 1.00845 0.96333 0.91731 0.90569 0.95053 0.90940 0.87422 0.85521 0.90838 0.86836 0.87491 0.95154 0.90683 0.89040 0.89200 0.92121 0.92325 0.92607 0.92542 0.92327 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 8.97 60.06 0.54 0.86 16 2 N -0.53 -7.02 4.75 -244.37 -1.16 -8.18 16 3 C 0.11 1.56 5.12 -4.98 -0.03 1.54 16 4 C -0.18 -3.02 4.89 -104.57 -0.51 -3.53 16 5 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 6 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 7 C 0.16 3.87 6.65 -39.10 -0.26 3.61 16 8 O -0.20 -5.80 9.16 0.07 0.00 -5.80 16 9 C -0.47 -13.42 9.49 30.88 0.29 -13.13 16 10 H 0.08 2.23 5.20 -52.49 -0.27 1.95 16 11 C 0.01 0.26 5.49 -17.52 -0.10 0.17 16 12 N -0.88 -26.58 13.70 55.48 0.76 -25.82 16 13 Si 1.10 23.90 29.92 -169.99 -5.09 18.82 16 14 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 17 C -0.20 -4.16 9.99 -39.39 -0.39 -4.56 16 18 C -0.07 -1.20 7.96 -39.61 -0.32 -1.52 16 19 C 0.09 0.93 4.32 -3.83 -0.02 0.92 16 20 C -0.13 -1.31 4.46 -90.62 -0.40 -1.72 16 21 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 22 C -0.18 -1.52 9.47 -26.73 -0.25 -1.77 16 23 C -0.13 -1.09 2.70 -154.51 -0.42 -1.50 16 24 C -0.11 -0.85 8.86 37.16 0.33 -0.52 16 25 C -0.11 -0.86 9.85 37.16 0.37 -0.49 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.76 7.17 -51.93 -0.37 0.39 16 28 H 0.08 1.11 6.17 -51.93 -0.32 0.79 16 29 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 30 H 0.07 0.93 7.87 -51.93 -0.41 0.53 16 31 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 33 H 0.28 8.68 7.97 -40.82 -0.33 8.35 16 34 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 35 H 0.11 1.62 8.03 -52.49 -0.42 1.20 16 36 H 0.03 0.32 7.85 -51.93 -0.41 -0.09 16 37 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 38 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 39 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 40 H 0.06 0.45 7.83 -51.93 -0.41 0.04 16 41 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 42 H 0.05 0.41 7.90 -51.93 -0.41 0.00 16 43 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 44 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -30.26 363.44 -9.35 -39.61 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.43 Total: 4.38 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: -1.91 Total: -28.48 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: -0.40 Total: -34.00 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: 0.00 Total: -5.80 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.09 Total: 18.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.26 -9.35 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852772869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.778 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds