Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00227 * 2 1 4 4 C 1.50699 * 109.46894 * 66.04436 * 3 2 1 5 5 C 1.38299 * 119.92895 * 90.00632 * 4 3 2 6 6 C 1.38100 * 120.06840 * 180.02562 * 5 4 3 7 7 C 1.38882 * 119.93309 * 359.97438 * 6 5 4 8 8 O 1.35741 * 120.06963 * 179.97438 * 7 6 5 9 9 C 1.34832 * 117.00506 * 5.54159 * 8 7 6 10 10 H 1.07999 * 119.99652 * 354.94101 * 9 8 7 11 11 C 1.38651 * 120.00703 * 174.94177 * 9 8 7 12 12 N 1.31557 * 119.99696 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00329 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47082 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46918 * 299.99594 * 13 11 9 16 16 H 1.48496 * 109.47544 * 59.99564 * 13 11 9 17 17 C 1.38882 * 119.86015 * 0.25490 * 7 6 5 18 18 C 1.38101 * 119.92899 * 359.49348 * 17 7 6 19 19 C 1.46900 * 110.99896 * 236.04482 * 2 1 3 20 20 C 1.52994 * 109.47302 * 293.95352 * 19 2 1 21 21 H 1.09005 * 115.55123 * 330.72535 * 20 19 2 22 22 C 1.53004 * 117.49949 * 116.39187 * 20 19 2 23 23 C 1.52997 * 59.99988 * 107.49141 * 22 20 19 24 24 C 1.53002 * 117.49731 * 252.51157 * 23 22 20 25 25 C 1.53002 * 117.49839 * 107.49124 * 23 22 20 26 26 H 1.09000 * 109.47297 * 60.00235 * 1 2 3 27 27 H 1.09003 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47247 * 300.00089 * 1 2 3 29 29 H 1.09005 * 109.46740 * 306.04593 * 3 2 1 30 30 H 1.08998 * 109.47044 * 186.05017 * 3 2 1 31 31 H 1.07995 * 119.96602 * 359.97438 * 5 4 3 32 32 H 1.08001 * 120.03215 * 179.97438 * 6 5 4 33 33 H 0.97004 * 120.00173 * 0.02562 * 12 11 9 34 34 H 1.07999 * 120.03676 * 179.72206 * 17 7 6 35 35 H 1.07997 * 119.96818 * 180.27655 * 18 17 7 36 36 H 1.09000 * 109.47293 * 53.95357 * 19 2 1 37 37 H 1.09004 * 109.47198 * 173.95055 * 19 2 1 38 38 H 1.09002 * 117.49600 * 214.97935 * 22 20 19 39 39 H 1.09000 * 117.49890 * 0.02562 * 22 20 19 40 40 H 1.08998 * 109.47054 * 128.62314 * 24 23 22 41 41 H 1.09006 * 109.46766 * 248.62503 * 24 23 22 42 42 H 1.08995 * 109.47273 * 8.61855 * 24 23 22 43 43 H 1.08997 * 109.47356 * 351.37452 * 25 23 22 44 44 H 1.09001 * 109.47229 * 111.37993 * 25 23 22 45 45 H 1.09003 * 109.47232 * 231.37361 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 6 2.4954 1.9640 2.3796 6 6 2.1694 2.5816 3.5710 7 6 0.9784 3.2872 3.6826 8 8 0.6550 3.8949 4.8525 9 6 1.5829 3.8735 5.8305 10 1 2.4991 3.3184 5.6935 11 6 1.3611 4.5642 7.0121 12 7 0.2453 5.2408 7.1789 13 14 2.6470 4.5350 8.3667 14 1 2.1728 5.3458 9.5169 15 1 2.8710 3.1345 8.8065 16 1 3.9198 5.1021 7.8533 17 6 0.1162 3.3648 2.5966 18 6 0.4503 2.7494 1.4063 19 6 1.9954 -0.7660 -1.1376 20 6 1.6314 -2.2426 -0.9703 21 1 1.5317 -2.5886 0.0585 22 6 0.7062 -2.8652 -2.0179 23 6 2.1921 -3.2291 -1.9967 24 6 3.0739 -2.6634 -3.1118 25 6 2.5703 -4.6261 -1.5005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.5611 1.9273 -0.8310 30 1 3.0797 1.3443 -0.1083 31 1 3.4212 1.4149 2.2923 32 1 2.8400 2.5160 4.4150 33 1 -0.4224 5.2563 6.4753 34 1 -0.8128 3.9089 2.6817 35 1 -0.2176 2.8130 0.5600 36 1 1.5611 -0.3873 -2.0628 37 1 3.0797 -0.6611 -1.1757 38 1 -0.0019 -3.6211 -1.6782 39 1 0.3571 -2.2229 -2.8264 40 1 3.9454 -2.1766 -2.6741 41 1 3.3995 -3.4739 -3.7639 42 1 2.5049 -1.9368 -3.6917 43 1 1.6897 -5.1142 -1.0831 44 1 2.9525 -5.2164 -2.3333 45 1 3.3384 -4.5430 -0.7315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852772869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = -5.681246 kcal Electronic energy + Delta-G solvation = -22301.422075 eV Core-core repulsion = 19091.164330 eV Total energy + Delta-G solvation = -3210.257745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97679 -40.02837 -38.82862 -37.03587 -34.33271 -31.96205 -31.78567 -30.16545 -28.77611 -28.10478 -27.40646 -26.56257 -23.81404 -23.49648 -21.91691 -21.58069 -20.25912 -19.51548 -18.69359 -17.09582 -16.81664 -16.52704 -16.15037 -15.71527 -15.61436 -15.57867 -15.23872 -14.94533 -14.75441 -14.51520 -14.37232 -14.17213 -13.62054 -13.27736 -13.03756 -13.01448 -12.86310 -12.80314 -12.62613 -12.51939 -12.39753 -12.27049 -12.13577 -11.97742 -11.93386 -11.81860 -11.26692 -10.76028 -10.65972 -10.39421 -9.82857 -9.27877 -8.97467 -8.92297 -6.24418 0.53537 0.61227 1.48503 1.60990 1.78790 2.35939 2.66657 2.83568 3.05127 3.26859 3.34914 3.78787 3.85660 3.96807 3.99669 4.02879 4.13676 4.22690 4.33378 4.38959 4.48678 4.54315 4.60426 4.64503 4.71401 4.79110 4.80158 4.87905 4.89835 4.96100 4.99651 5.07057 5.09105 5.09955 5.13790 5.22180 5.24929 5.30897 5.34371 5.49728 5.51607 5.71306 5.76593 6.04235 6.13570 6.22195 6.30618 6.86550 7.62859 8.50450 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.002698 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.977797 B =10376.684954 C =10806.286566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.549 5.549 3 C 0.115 3.885 4 C -0.148 4.148 5 C -0.050 4.050 6 C -0.241 4.241 7 C 0.115 3.885 8 O -0.253 6.253 9 C -0.487 4.487 10 H 0.090 0.910 11 C -0.045 4.045 12 N -0.918 5.918 13 Si 1.145 2.855 14 H -0.273 1.273 15 H -0.260 1.260 16 H -0.260 1.260 17 C -0.205 4.205 18 C -0.058 4.058 19 C 0.093 3.907 20 C -0.145 4.145 21 H 0.094 0.906 22 C -0.172 4.172 23 C -0.124 4.124 24 C -0.115 4.115 25 C -0.115 4.115 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.259 0.741 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 -16.288 -21.247 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.273 5.273 3 C -0.012 4.012 4 C -0.149 4.149 5 C -0.069 4.069 6 C -0.260 4.260 7 C 0.065 3.935 8 O -0.161 6.161 9 C -0.563 4.563 10 H 0.108 0.892 11 C -0.241 4.241 12 N -0.553 5.553 13 Si 0.960 3.040 14 H -0.198 1.198 15 H -0.185 1.185 16 H -0.184 1.184 17 C -0.224 4.224 18 C -0.076 4.076 19 C -0.034 4.034 20 C -0.164 4.164 21 H 0.113 0.887 22 C -0.209 4.209 23 C -0.124 4.124 24 C -0.172 4.172 25 C -0.173 4.173 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.155 0.845 32 H 0.133 0.867 33 H 0.068 0.932 34 H 0.131 0.869 35 H 0.161 0.839 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.980 -15.839 -19.240 25.629 hybrid contribution -1.135 0.093 -1.803 2.132 sum 4.846 -15.746 -21.043 26.725 Atomic orbital electron populations 1.22363 0.87338 1.02027 1.00331 1.61920 1.08375 1.13335 1.43639 1.20823 1.00593 0.87370 0.92430 1.19605 0.95854 1.02729 0.96721 1.20906 0.99335 0.95705 0.90942 1.21263 0.98789 1.05620 1.00367 1.19818 0.94547 0.92704 0.86384 1.83637 1.42885 1.69214 1.20378 1.22579 1.00921 1.36461 0.96342 0.89217 1.28397 1.02814 0.92183 1.00718 1.70713 1.08439 1.40032 1.36092 0.82592 0.71400 0.78255 0.71724 1.19772 1.18480 1.18443 1.20427 1.00993 1.08262 0.92698 1.20859 0.96243 0.94935 0.95577 1.21619 0.99995 0.91053 0.90720 1.22336 1.05009 0.93377 0.95639 0.88734 1.23364 0.92689 1.03481 1.01337 1.21719 0.95445 0.96132 0.99152 1.21353 0.98767 1.00876 0.96181 1.21367 1.01378 0.93294 1.01213 0.94930 0.91076 0.92751 0.93232 0.89221 0.84507 0.86682 0.93215 0.86850 0.83892 0.94223 0.90153 0.88848 0.88672 0.92065 0.91359 0.92342 0.92618 0.91176 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 8.97 127.69 1.15 1.76 16 2 N -0.55 -12.43 4.75 -927.05 -4.41 -16.84 16 3 C 0.11 2.66 5.12 85.56 0.44 3.10 16 4 C -0.15 -4.64 4.89 -19.83 -0.10 -4.73 16 5 C -0.05 -1.79 9.69 22.25 0.22 -1.58 16 6 C -0.24 -10.87 9.17 22.39 0.21 -10.67 16 7 C 0.12 5.84 6.65 22.58 0.15 5.99 16 8 O -0.25 -15.39 9.16 -22.66 -0.21 -15.60 16 9 C -0.49 -29.13 9.49 67.92 0.64 -28.48 16 10 H 0.09 5.01 5.20 -2.91 -0.02 5.00 16 11 C -0.05 -2.65 5.49 84.83 0.47 -2.18 16 12 N -0.92 -58.39 13.70 21.61 0.30 -58.09 16 13 Si 1.14 48.92 29.92 68.60 2.05 50.97 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 17 C -0.20 -8.74 9.99 22.39 0.22 -8.51 16 18 C -0.06 -1.93 7.96 22.25 0.18 -1.75 16 19 C 0.09 1.66 4.32 86.30 0.37 2.03 16 20 C -0.14 -2.49 4.46 -10.79 -0.05 -2.54 16 21 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 22 C -0.17 -2.50 9.47 30.59 0.29 -2.21 16 23 C -0.12 -1.74 2.70 -52.18 -0.14 -1.89 16 24 C -0.11 -1.34 8.86 71.98 0.64 -0.70 16 25 C -0.12 -1.48 9.85 71.98 0.71 -0.77 16 26 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 1.49 7.17 -2.39 -0.02 1.47 16 28 H 0.05 1.45 6.17 -2.39 -0.01 1.43 16 29 H 0.05 1.03 8.06 -2.38 -0.02 1.01 16 30 H 0.09 1.85 7.87 -2.39 -0.02 1.83 16 31 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 32 H 0.12 5.36 5.64 -2.91 -0.02 5.35 16 33 H 0.26 17.20 7.97 -92.71 -0.74 16.46 16 34 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 35 H 0.14 3.78 8.03 -2.91 -0.02 3.75 16 36 H 0.04 0.65 7.85 -2.39 -0.02 0.63 16 37 H 0.08 1.35 7.56 -2.38 -0.02 1.33 16 38 H 0.09 1.32 8.05 -2.39 -0.02 1.30 16 39 H 0.09 1.30 7.94 -2.39 -0.02 1.28 16 40 H 0.06 0.72 7.83 -2.39 -0.02 0.70 16 41 H 0.07 0.67 7.92 -2.38 -0.02 0.65 16 42 H 0.06 0.65 7.90 -2.39 -0.02 0.63 16 43 H 0.05 0.71 7.90 -2.39 -0.02 0.69 16 44 H 0.07 0.74 7.92 -2.39 -0.02 0.72 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -70.03 363.44 4.10 -65.93 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.98 Total: 26.76 kcal Atomic # 6 Polarization: -58.52 SS G_CDS: 5.39 Total: -53.13 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -4.11 Total: -74.93 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.21 Total: -15.60 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.05 Total: 50.97 kcal Total: -70.03 4.10 -65.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852772869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.248 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds