Wall clock time and date at job start Tue Mar 31 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46878 * 2 1 4 4 C 1.52998 * 109.46751 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47126 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47126 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47126 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47138 * 179.97438 * 7 6 5 9 9 C 1.34776 * 119.99933 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99748 * 0.02562 * 9 8 7 11 11 C 1.47649 * 120.00001 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89637 * 0.24992 * 11 9 8 13 13 C 1.36306 * 120.10434 * 180.25839 * 12 11 9 14 14 C 1.40885 * 119.89590 * 359.47343 * 13 12 11 15 15 C 1.41111 * 120.10921 * 180.30311 * 14 13 12 16 16 H 1.07994 * 120.00597 * 154.53119 * 15 14 13 17 17 C 1.40227 * 119.99382 * 334.52933 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.05813 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.06034 * 17 15 14 20 20 H 1.48501 * 109.47101 * 89.99684 * 19 17 15 21 21 H 1.48501 * 109.47179 * 209.99729 * 19 17 15 22 22 H 1.48501 * 109.46949 * 330.00066 * 19 17 15 23 23 C 1.40889 * 119.79071 * 0.27404 * 14 13 12 24 24 C 1.36316 * 119.89281 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47296 * 59.99571 * 1 2 3 26 26 H 1.08999 * 109.46732 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46549 * 299.99664 * 1 2 3 28 28 H 1.09000 * 109.46549 * 240.00336 * 2 1 3 29 29 H 1.08994 * 109.47296 * 120.00429 * 2 1 3 30 30 H 1.09000 * 109.47256 * 60.00769 * 3 2 1 31 31 H 1.08994 * 109.47508 * 300.00300 * 3 2 1 32 32 H 1.08997 * 109.47561 * 60.00202 * 4 3 2 33 33 H 1.09003 * 109.47121 * 299.99980 * 4 3 2 34 34 H 1.09004 * 109.46887 * 59.99949 * 5 4 3 35 35 H 1.09003 * 109.46877 * 299.99851 * 5 4 3 36 36 H 1.08997 * 109.47561 * 59.99923 * 6 5 4 37 37 H 1.09003 * 109.47121 * 299.99701 * 6 5 4 38 38 H 1.08997 * 109.46964 * 59.99557 * 7 6 5 39 39 H 1.09002 * 109.46546 * 300.00282 * 7 6 5 40 40 H 0.97004 * 120.00572 * 0.02562 * 8 7 6 41 41 H 1.08002 * 119.94001 * 0.03091 * 12 11 9 42 42 H 1.08006 * 120.05292 * 179.74851 * 13 12 11 43 43 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.05483 * 180.02562 * 23 14 13 45 45 H 1.08000 * 119.94946 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 6 5.6100 2.8850 -0.0013 7 6 6.1201 4.3275 -0.0013 8 7 7.5850 4.3275 -0.0019 9 6 8.2589 5.4947 -0.0025 10 8 7.6510 6.5476 -0.0021 11 6 9.7354 5.4947 -0.0037 12 6 10.4333 4.2809 -0.0095 13 6 11.7963 4.2759 -0.0053 14 6 12.5030 5.4947 -0.0064 15 6 13.9141 5.4947 -0.0085 16 1 14.4535 6.3391 -0.4115 17 6 14.6159 4.3983 0.5127 18 7 14.0064 3.5409 1.2873 19 14 16.4225 4.1639 0.0996 20 1 17.2562 4.8620 1.1110 21 1 16.7476 2.7149 0.1049 22 1 16.7000 4.7286 -1.2455 23 6 11.7963 6.7135 -0.0059 24 6 10.4332 6.7085 -0.0039 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 3.7171 3.3983 0.8905 35 1 3.7164 3.3994 -0.8896 36 1 5.9727 2.3718 -0.8919 37 1 5.9741 2.3705 0.8881 38 1 5.7575 4.8411 0.8891 39 1 5.7559 4.8416 -0.8908 40 1 8.0701 3.4875 -0.0026 41 1 9.8906 3.3471 -0.0136 42 1 12.3338 3.3390 -0.0057 43 1 14.4918 2.7822 1.6475 44 1 12.3338 7.6503 -0.0072 45 1 9.8906 7.6423 -0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862357814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:53 Heat of formation + Delta-G solvation = -68.423981 kcal Electronic energy + Delta-G solvation = -21315.811722 eV Core-core repulsion = 18102.833248 eV Total energy + Delta-G solvation = -3212.978474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.09190 -37.30575 -36.83865 -35.05356 -33.85736 -33.01558 -30.54476 -29.50435 -29.36595 -26.49584 -25.30372 -22.81089 -21.68767 -21.26198 -21.16307 -20.80020 -19.44884 -17.52213 -16.74543 -16.34570 -15.61887 -15.36049 -15.23483 -14.28595 -14.23933 -14.07314 -13.92581 -13.39737 -13.28678 -13.22598 -12.74307 -12.47354 -12.25720 -12.21727 -12.03741 -11.89012 -11.43655 -11.41179 -11.32108 -11.24748 -11.14068 -10.98272 -10.87104 -10.68773 -10.66484 -10.60259 -10.05352 -9.55525 -9.35001 -8.94394 -8.55664 -7.71523 -7.52774 -7.02530 -4.59933 2.24398 2.90980 2.94546 3.00730 3.03970 3.74224 3.81299 3.89228 4.44941 4.57939 4.60407 4.75119 4.84562 4.92153 5.09675 5.13612 5.30999 5.44972 5.45407 5.50798 5.57569 5.62062 5.70732 5.75726 5.76025 5.80600 5.89698 6.00421 6.00762 6.05307 6.14106 6.20758 6.28187 6.32703 6.77315 6.83329 6.96585 7.07893 7.14066 7.44313 7.66112 7.79832 7.86415 8.07770 8.27130 8.40366 8.63611 8.75765 9.10586 9.89645 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025678 B = 0.002229 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.179146 B =12561.148690 C =13538.671331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.132 4.132 7 C 0.123 3.877 8 N -0.743 5.743 9 C 0.570 3.430 10 O -0.577 6.577 11 C -0.284 4.284 12 C -0.063 4.063 13 C -0.177 4.177 14 C 0.128 3.872 15 C -0.443 4.443 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.774 5.774 19 Si 0.913 3.087 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.258 1.258 23 C -0.238 4.238 24 C -0.023 4.023 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.148 -8.782 -1.606 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.154 4.154 6 C -0.170 4.170 7 C -0.001 4.001 8 N -0.396 5.396 9 C 0.365 3.635 10 O -0.459 6.459 11 C -0.288 4.288 12 C -0.082 4.082 13 C -0.196 4.196 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.397 5.397 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.258 4.258 24 C -0.042 4.042 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.556 -8.257 -1.453 17.672 hybrid contribution 1.027 -0.671 -0.006 1.227 sum -14.529 -8.928 -1.459 17.115 Atomic orbital electron populations 1.21784 0.96037 1.01474 1.01780 1.21549 0.95740 0.97114 1.01978 1.21634 0.95558 0.96597 1.02083 1.21609 0.95195 0.96805 1.02149 1.21507 0.94595 0.96872 1.02446 1.21812 0.95977 0.96457 1.02708 1.21186 0.81039 0.96180 1.01692 1.45924 1.06182 1.09303 1.78230 1.18596 0.88234 0.82484 0.74187 1.90626 1.70826 1.31571 1.52899 1.18930 0.89932 0.94590 1.25370 1.20475 0.94862 0.94613 0.98292 1.20968 0.92373 0.98736 1.07558 1.17794 0.93306 0.91104 0.85302 1.19832 0.91671 1.02444 1.33181 0.89739 1.26093 1.01625 0.94477 0.92490 1.69741 1.39048 1.10603 1.20315 0.86221 0.81118 0.78523 0.80487 1.19165 1.19818 1.18135 1.20726 0.93185 0.97195 1.14661 1.20369 0.93847 0.95744 0.94238 0.92801 0.92909 0.92791 0.92102 0.92091 0.92025 0.92038 0.91972 0.91963 0.91720 0.91740 0.91399 0.91364 0.92241 0.92245 0.76813 0.89328 0.86206 0.90267 0.88369 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.84 5.93 -26.73 -0.16 -1.00 16 3 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 4 C -0.12 -0.93 5.21 -26.73 -0.14 -1.07 16 5 C -0.12 -1.03 5.21 -26.73 -0.14 -1.16 16 6 C -0.13 -1.37 5.33 -26.73 -0.14 -1.51 16 7 C 0.12 1.75 5.67 -4.04 -0.02 1.72 16 8 N -0.74 -12.71 5.50 -61.31 -0.34 -13.05 16 9 C 0.57 12.45 7.76 -12.42 -0.10 12.35 16 10 O -0.58 -14.13 16.32 5.29 0.09 -14.05 16 11 C -0.28 -6.59 5.89 -104.73 -0.62 -7.21 16 12 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 13 C -0.18 -4.36 8.63 -39.28 -0.34 -4.69 16 14 C 0.13 3.29 5.57 -106.80 -0.59 2.69 16 15 C -0.44 -11.08 9.05 -37.75 -0.34 -11.42 16 16 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 17 C 0.07 1.73 5.15 -17.31 -0.09 1.64 16 18 N -0.77 -18.58 10.95 55.56 0.61 -17.97 16 19 Si 0.91 17.28 29.59 -169.99 -5.03 12.25 16 20 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 23 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 24 C -0.02 -0.55 9.52 -39.61 -0.38 -0.92 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.40 6.02 6.47 -40.82 -0.26 5.75 16 41 H 0.09 1.67 6.37 -52.49 -0.33 1.34 16 42 H 0.12 2.97 6.18 -52.48 -0.32 2.65 16 43 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 44 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 45 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -28.33 370.00 -10.32 -38.65 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.64 Total: 8.73 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.59 Total: -20.15 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.27 Total: -31.02 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.33 -10.32 -38.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862357814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.775 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds