Wall clock time and date at job start Tue Mar 31 2020 06:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46878 * 2 1 4 4 C 1.52998 * 109.46751 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47126 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47126 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47126 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47138 * 179.97438 * 7 6 5 9 9 C 1.34776 * 119.99933 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99748 * 0.02562 * 9 8 7 11 11 C 1.47649 * 120.00001 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89637 * 0.24992 * 11 9 8 13 13 C 1.36306 * 120.10434 * 180.25839 * 12 11 9 14 14 C 1.40885 * 119.89590 * 359.47343 * 13 12 11 15 15 C 1.41111 * 120.10921 * 180.30311 * 14 13 12 16 16 H 1.07994 * 120.00597 * 154.53119 * 15 14 13 17 17 C 1.40227 * 119.99382 * 334.52933 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.05813 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.06034 * 17 15 14 20 20 H 1.48501 * 109.47101 * 89.99684 * 19 17 15 21 21 H 1.48501 * 109.47179 * 209.99729 * 19 17 15 22 22 H 1.48501 * 109.46949 * 330.00066 * 19 17 15 23 23 C 1.40889 * 119.79071 * 0.27404 * 14 13 12 24 24 C 1.36316 * 119.89281 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47296 * 59.99571 * 1 2 3 26 26 H 1.08999 * 109.46732 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46549 * 299.99664 * 1 2 3 28 28 H 1.09000 * 109.46549 * 240.00336 * 2 1 3 29 29 H 1.08994 * 109.47296 * 120.00429 * 2 1 3 30 30 H 1.09000 * 109.47256 * 60.00769 * 3 2 1 31 31 H 1.08994 * 109.47508 * 300.00300 * 3 2 1 32 32 H 1.08997 * 109.47561 * 60.00202 * 4 3 2 33 33 H 1.09003 * 109.47121 * 299.99980 * 4 3 2 34 34 H 1.09004 * 109.46887 * 59.99949 * 5 4 3 35 35 H 1.09003 * 109.46877 * 299.99851 * 5 4 3 36 36 H 1.08997 * 109.47561 * 59.99923 * 6 5 4 37 37 H 1.09003 * 109.47121 * 299.99701 * 6 5 4 38 38 H 1.08997 * 109.46964 * 59.99557 * 7 6 5 39 39 H 1.09002 * 109.46546 * 300.00282 * 7 6 5 40 40 H 0.97004 * 120.00572 * 0.02562 * 8 7 6 41 41 H 1.08002 * 119.94001 * 0.03091 * 12 11 9 42 42 H 1.08006 * 120.05292 * 179.74851 * 13 12 11 43 43 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.05483 * 180.02562 * 23 14 13 45 45 H 1.08000 * 119.94946 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 6 5.6100 2.8850 -0.0013 7 6 6.1201 4.3275 -0.0013 8 7 7.5850 4.3275 -0.0019 9 6 8.2589 5.4947 -0.0025 10 8 7.6510 6.5476 -0.0021 11 6 9.7354 5.4947 -0.0037 12 6 10.4333 4.2809 -0.0095 13 6 11.7963 4.2759 -0.0053 14 6 12.5030 5.4947 -0.0064 15 6 13.9141 5.4947 -0.0085 16 1 14.4535 6.3391 -0.4115 17 6 14.6159 4.3983 0.5127 18 7 14.0064 3.5409 1.2873 19 14 16.4225 4.1639 0.0996 20 1 17.2562 4.8620 1.1110 21 1 16.7476 2.7149 0.1049 22 1 16.7000 4.7286 -1.2455 23 6 11.7963 6.7135 -0.0059 24 6 10.4332 6.7085 -0.0039 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 3.7171 3.3983 0.8905 35 1 3.7164 3.3994 -0.8896 36 1 5.9727 2.3718 -0.8919 37 1 5.9741 2.3705 0.8881 38 1 5.7575 4.8411 0.8891 39 1 5.7559 4.8416 -0.8908 40 1 8.0701 3.4875 -0.0026 41 1 9.8906 3.3471 -0.0136 42 1 12.3338 3.3390 -0.0057 43 1 14.4918 2.7822 1.6475 44 1 12.3338 7.6503 -0.0072 45 1 9.8906 7.6423 -0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862357814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:52 Heat of formation + Delta-G solvation = -81.602047 kcal Electronic energy + Delta-G solvation = -21316.383166 eV Core-core repulsion = 18102.833248 eV Total energy + Delta-G solvation = -3213.549918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77970 -38.96730 -37.73658 -36.15402 -35.66630 -34.05531 -32.13388 -31.31038 -30.49259 -27.94954 -26.50390 -23.98211 -23.15330 -22.66628 -22.07637 -21.73690 -21.04278 -19.36711 -18.38987 -17.29806 -17.08392 -16.80118 -16.28614 -15.75447 -15.51877 -15.37221 -15.07849 -14.80275 -14.49017 -14.30970 -14.14740 -13.86033 -13.66304 -13.29327 -13.18147 -13.05511 -12.89675 -12.83544 -12.63923 -12.36479 -12.12665 -12.08531 -11.79568 -11.75939 -11.52266 -11.37851 -11.35534 -11.30764 -11.11864 -10.68718 -10.06557 -9.57783 -9.39925 -8.78836 -6.48596 0.43601 1.14534 1.39115 1.42902 1.54992 2.11875 2.18595 2.41303 2.78854 3.68583 3.73580 3.97995 4.03650 4.15482 4.20863 4.30815 4.32683 4.41269 4.43755 4.44482 4.64980 4.72615 4.74155 4.86069 4.92010 4.99325 5.01340 5.03731 5.04092 5.11919 5.15503 5.20751 5.29097 5.30153 5.30186 5.42711 5.52123 5.55872 5.57167 5.61429 5.81970 5.94301 5.99148 6.22549 6.53705 6.71784 6.77033 6.88685 7.44077 8.16557 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025678 B = 0.002229 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.179146 B =12561.148690 C =13538.671331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.120 4.120 7 C 0.121 3.879 8 N -0.726 5.726 9 C 0.569 3.431 10 O -0.609 6.609 11 C -0.295 4.295 12 C -0.054 4.054 13 C -0.196 4.196 14 C 0.100 3.900 15 C -0.474 4.474 16 H 0.085 0.915 17 C 0.038 3.962 18 N -0.799 5.799 19 Si 0.988 3.012 20 H -0.261 1.261 21 H -0.261 1.261 22 H -0.258 1.258 23 C -0.252 4.252 24 C -0.034 4.034 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.408 0.592 41 H 0.125 0.875 42 H 0.115 0.885 43 H 0.297 0.703 44 H 0.104 0.896 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.305 -10.589 -1.730 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.154 4.154 5 C -0.151 4.151 6 C -0.158 4.158 7 C -0.003 4.003 8 N -0.378 5.378 9 C 0.362 3.638 10 O -0.494 6.494 11 C -0.299 4.299 12 C -0.072 4.072 13 C -0.216 4.216 14 C 0.097 3.903 15 C -0.501 4.501 16 H 0.103 0.897 17 C -0.181 4.181 18 N -0.423 5.423 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.186 1.186 22 H -0.181 1.181 23 C -0.272 4.272 24 C -0.054 4.054 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.245 0.755 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.746 -10.102 -1.571 18.774 hybrid contribution 0.981 -0.110 0.059 0.989 sum -14.765 -10.212 -1.513 18.016 Atomic orbital electron populations 1.21789 0.95679 1.01839 1.01828 1.21548 0.96093 0.96724 1.02034 1.21616 0.95156 0.96962 1.02024 1.21567 0.95530 0.95890 1.02365 1.21484 0.93380 0.97747 1.02510 1.21751 0.96898 0.93649 1.03516 1.21391 0.78956 0.98843 1.01089 1.45813 1.07556 1.08313 1.76125 1.18448 0.87761 0.83312 0.74275 1.90606 1.71191 1.33007 1.54587 1.19214 0.91150 0.94634 1.24926 1.20735 0.94270 0.95816 0.96428 1.21010 0.93315 0.98187 1.09040 1.18159 0.94201 0.91853 0.86076 1.20110 0.91877 1.03751 1.34387 0.89665 1.26926 1.06048 0.93513 0.91639 1.69757 1.41096 1.11035 1.20392 0.85109 0.75159 0.78934 0.80055 1.18587 1.18551 1.18117 1.20863 0.93558 0.97411 1.15350 1.20519 0.93867 0.96458 0.94510 0.92746 0.92419 0.92773 0.92018 0.92062 0.92133 0.92081 0.91699 0.91790 0.91773 0.91683 0.90477 0.90625 0.92962 0.92786 0.75477 0.85712 0.86733 0.89164 0.87769 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.99 0.71 -0.94 16 2 C -0.13 -1.48 5.93 30.60 0.18 -1.30 16 3 C -0.12 -1.52 5.21 30.59 0.16 -1.36 16 4 C -0.12 -1.55 5.21 30.60 0.16 -1.39 16 5 C -0.11 -1.77 5.21 30.60 0.16 -1.61 16 6 C -0.12 -2.21 5.33 30.60 0.16 -2.05 16 7 C 0.12 3.23 5.67 86.38 0.49 3.72 16 8 N -0.73 -23.64 5.50 -466.16 -2.57 -26.21 16 9 C 0.57 24.50 7.76 86.73 0.67 25.17 16 10 O -0.61 -29.89 16.32 -3.97 -0.06 -29.96 16 11 C -0.29 -13.67 5.89 -19.93 -0.12 -13.78 16 12 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 13 C -0.20 -9.70 8.63 22.47 0.19 -9.51 16 14 C 0.10 5.24 5.57 -21.28 -0.12 5.13 16 15 C -0.47 -24.01 9.05 23.46 0.21 -23.79 16 16 H 0.09 4.14 7.90 -2.91 -0.02 4.11 16 17 C 0.04 1.74 5.15 85.35 0.44 2.18 16 18 N -0.80 -38.10 10.95 21.87 0.24 -37.86 16 19 Si 0.99 34.66 29.59 68.60 2.03 36.69 16 20 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 21 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 22 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 23 C -0.25 -12.67 9.73 22.47 0.22 -12.45 16 24 C -0.03 -1.68 9.52 22.25 0.21 -1.47 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 40 H 0.41 11.36 6.47 -92.71 -0.60 10.76 16 41 H 0.13 4.42 6.37 -2.91 -0.02 4.40 16 42 H 0.11 5.71 6.18 -2.91 -0.02 5.70 16 43 H 0.30 12.54 8.29 -92.70 -0.77 11.77 16 44 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 45 H 0.10 4.85 7.63 -2.91 -0.02 4.83 16 Total: -1.00 -60.97 370.00 3.95 -57.03 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: 0.36 Total: 35.89 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 3.95 Total: -35.58 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -2.33 Total: -64.07 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.06 Total: -29.96 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.03 Total: 36.69 kcal Total: -60.97 3.95 -57.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862357814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.575 kcal (2) G-P(sol) polarization free energy of solvation -60.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds