Wall clock time and date at job start Tue Mar 31 2020 06:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46872 * 2 1 4 4 C 1.53002 * 109.46498 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46864 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47238 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47232 * 55.00078 * 6 5 4 8 8 C 1.52999 * 109.47060 * 175.00623 * 6 5 4 9 9 N 1.46510 * 109.47136 * 295.00356 * 6 5 4 10 10 C 1.34776 * 119.99748 * 154.99953 * 9 6 5 11 11 O 1.21608 * 120.00232 * 359.97438 * 10 9 6 12 12 C 1.47431 * 119.99588 * 179.97438 * 10 9 6 13 13 C 1.39224 * 120.28436 * 355.35397 * 12 10 9 14 14 C 1.38216 * 120.09495 * 180.02562 * 13 12 10 15 15 C 1.38826 * 120.67574 * 0.02562 * 14 13 12 16 16 C 1.37595 * 120.57212 * 0.02562 * 15 14 13 17 17 C 1.40715 * 119.87536 * 359.67629 * 16 15 14 18 18 C 1.40894 * 120.32384 * 180.30024 * 17 16 15 19 19 H 1.08008 * 119.99589 * 215.85266 * 18 17 16 20 20 C 1.40267 * 120.00513 * 35.85338 * 18 17 16 21 21 N 1.30630 * 119.99628 * 8.96993 * 20 18 17 22 22 Si 1.86798 * 120.00193 * 188.97731 * 20 18 17 23 23 H 1.48499 * 109.46950 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47290 * 119.99986 * 22 20 18 25 25 H 1.48504 * 109.46912 * 239.99435 * 22 20 18 26 26 H 1.09001 * 109.47137 * 299.99858 * 1 2 3 27 27 H 1.09001 * 109.47351 * 60.00004 * 1 2 3 28 28 H 1.09003 * 109.47472 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46539 * 239.99691 * 2 1 3 30 30 H 1.08998 * 109.46865 * 120.00011 * 2 1 3 31 31 H 1.08990 * 109.47550 * 60.00343 * 3 2 1 32 32 H 1.08993 * 109.46939 * 299.99517 * 3 2 1 33 33 H 1.09001 * 109.47521 * 299.99871 * 4 3 2 34 34 H 1.09001 * 109.47341 * 60.00246 * 4 3 2 35 35 H 1.08998 * 109.47506 * 299.99971 * 5 4 3 36 36 H 1.09006 * 109.47064 * 60.00040 * 5 4 3 37 37 H 1.08997 * 109.47110 * 299.99437 * 8 6 5 38 38 H 1.08993 * 109.47779 * 60.00117 * 8 6 5 39 39 H 1.09002 * 109.47184 * 179.97438 * 8 6 5 40 40 H 0.97002 * 119.99644 * 334.99745 * 9 6 5 41 41 H 1.08003 * 119.95630 * 0.02562 * 13 12 10 42 42 H 1.08004 * 119.66284 * 179.97438 * 14 13 12 43 43 H 1.08002 * 119.71607 * 179.97438 * 15 14 13 44 44 H 1.07992 * 120.06659 * 179.97438 * 16 15 14 45 45 H 0.97004 * 119.99712 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6100 2.8849 -0.0013 7 1 5.9734 2.2951 -0.8428 8 6 6.1200 4.3219 -0.1275 9 7 6.0984 2.3016 1.2508 10 6 7.3204 1.7351 1.2987 11 8 8.0174 1.7077 0.3026 12 6 7.8120 1.1487 2.5589 13 6 7.0611 1.2616 3.7258 14 6 7.5260 0.7108 4.9052 15 6 8.7415 0.0413 4.9434 16 6 9.5065 -0.0858 3.8068 17 6 9.0530 0.4605 2.5919 18 6 9.8257 0.3304 1.4210 19 1 9.8509 1.1330 0.6987 20 6 10.5623 -0.8414 1.1932 21 7 10.3980 -1.8777 1.9714 22 14 11.7782 -0.9199 -0.2227 23 1 11.7772 0.3756 -0.9484 24 1 13.1388 -1.1897 0.3077 25 1 11.3848 -2.0085 -1.1531 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 3.9337 0.9284 0.8891 34 1 3.9329 0.9287 -0.8909 35 1 3.7163 3.3985 -0.8912 36 1 3.7170 3.3990 0.8887 37 1 5.7567 4.7558 -1.0590 38 1 5.7568 4.9117 0.7140 39 1 7.2100 4.3219 -0.1270 40 1 5.5422 2.3233 2.0453 41 1 6.1140 1.7804 3.7096 42 1 6.9380 0.8030 5.8064 43 1 9.0901 -0.3828 5.8734 44 1 10.4510 -0.6080 3.8459 45 1 10.9076 -2.6879 1.8141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864767518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:52 Heat of formation + Delta-G solvation = -54.410578 kcal Electronic energy + Delta-G solvation = -22935.855383 eV Core-core repulsion = 19723.484576 eV Total energy + Delta-G solvation = -3212.370807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.12088 -37.28526 -36.29032 -34.79184 -33.66592 -31.77568 -30.40617 -29.76666 -28.88055 -26.38837 -25.37902 -22.90996 -22.05551 -21.05606 -20.97471 -20.17653 -19.40135 -17.44940 -16.30305 -15.95990 -15.37878 -15.13180 -14.31880 -14.21192 -13.95800 -13.89226 -13.71179 -13.33668 -13.15370 -12.77360 -12.68769 -12.39220 -12.17360 -12.03359 -11.75759 -11.61325 -11.54223 -11.12410 -11.10817 -11.00748 -10.91818 -10.67934 -10.60619 -10.51435 -10.45251 -10.28113 -10.05179 -9.63438 -9.24827 -8.31346 -8.28197 -7.56336 -7.30570 -6.76917 -4.36199 2.39178 2.82279 3.12664 3.22183 3.24249 4.00916 4.03964 4.21852 4.61049 4.72533 4.85363 4.96896 5.14283 5.20554 5.26349 5.48926 5.59840 5.64328 5.66898 5.68341 5.75986 5.86347 5.89836 5.96428 5.98497 5.99845 6.04611 6.11082 6.17816 6.27260 6.30815 6.41480 6.42915 6.53308 6.68166 6.97466 7.13273 7.21500 7.32844 7.48941 7.64544 7.90902 8.02761 8.20918 8.46146 8.72000 8.86816 8.94374 9.49549 10.19378 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.004229 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.834267 B = 6619.432292 C = 6992.189635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.122 4.122 5 C -0.123 4.123 6 C 0.144 3.856 7 H 0.083 0.917 8 C -0.161 4.161 9 N -0.742 5.742 10 C 0.566 3.434 11 O -0.540 6.540 12 C -0.260 4.260 13 C -0.057 4.057 14 C -0.245 4.245 15 C -0.096 4.096 16 C -0.147 4.147 17 C 0.147 3.853 18 C -0.422 4.422 19 H 0.111 0.889 20 C 0.069 3.931 21 N -0.795 5.795 22 Si 0.915 3.085 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.275 1.275 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.390 0.610 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.706 5.312 -2.203 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.159 4.159 5 C -0.161 4.161 6 C 0.039 3.961 7 H 0.101 0.899 8 C -0.220 4.220 9 N -0.396 5.396 10 C 0.360 3.640 11 O -0.419 6.419 12 C -0.265 4.265 13 C -0.076 4.076 14 C -0.264 4.264 15 C -0.115 4.115 16 C -0.167 4.167 17 C 0.143 3.857 18 C -0.451 4.451 19 H 0.129 0.871 20 C -0.149 4.149 21 N -0.421 5.421 22 Si 0.739 3.261 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.200 1.200 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.224 0.776 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.133 0.867 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.115 5.047 -2.925 13.446 hybrid contribution 0.125 -0.269 -0.055 0.302 sum -11.990 4.779 -2.981 13.246 Atomic orbital electron populations 1.21777 0.96200 1.01397 1.01532 1.21553 0.95481 0.97218 1.02277 1.21612 0.95746 0.96533 1.01618 1.21619 0.94667 0.96710 1.02949 1.21876 0.94755 0.97230 1.02265 1.20761 0.92465 0.93970 0.88902 0.89927 1.22174 1.02418 0.96501 1.00867 1.46079 1.18978 1.62348 1.12219 1.18387 0.79934 0.76763 0.88960 1.90641 1.55874 1.58286 1.37055 1.19508 0.98674 1.16273 0.92005 1.20645 0.96584 0.97396 0.93009 1.20281 0.99585 1.09753 0.96823 1.20791 0.95033 0.98463 0.97220 1.21339 1.00291 1.03484 0.91542 1.17495 0.88405 0.86883 0.92892 1.20339 1.18962 1.01370 1.04412 0.87142 1.26135 0.95937 0.95277 0.97551 1.69730 1.34334 1.02680 1.35330 0.86135 0.79400 0.79684 0.80845 1.18004 1.19930 1.19990 0.92885 0.92973 0.92956 0.92080 0.91877 0.92222 0.92349 0.91386 0.91938 0.91106 0.91829 0.92566 0.93017 0.91917 0.77604 0.89310 0.89165 0.89142 0.86720 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.13 -1.25 5.93 -26.73 -0.16 -1.41 16 3 C -0.12 -1.15 5.21 -26.73 -0.14 -1.29 16 4 C -0.12 -1.44 5.10 -26.73 -0.14 -1.57 16 5 C -0.12 -1.40 4.75 -26.73 -0.13 -1.52 16 6 C 0.14 2.16 2.58 -67.92 -0.17 1.99 16 7 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 8 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 9 N -0.74 -12.99 4.48 -54.87 -0.25 -13.24 16 10 C 0.57 13.01 7.69 -12.52 -0.10 12.92 16 11 O -0.54 -14.11 13.19 5.27 0.07 -14.04 16 12 C -0.26 -6.35 5.92 -104.37 -0.62 -6.97 16 13 C -0.06 -1.23 9.52 -39.22 -0.37 -1.60 16 14 C -0.25 -5.23 10.03 -39.37 -0.39 -5.62 16 15 C -0.10 -2.18 10.01 -39.60 -0.40 -2.58 16 16 C -0.15 -3.77 8.62 -38.88 -0.34 -4.10 16 17 C 0.15 3.97 5.48 -106.54 -0.58 3.39 16 18 C -0.42 -11.70 7.78 -37.82 -0.29 -11.99 16 19 H 0.11 3.18 5.73 -52.48 -0.30 2.88 16 20 C 0.07 1.79 5.25 -17.30 -0.09 1.70 16 21 N -0.80 -20.82 11.25 55.56 0.63 -20.19 16 22 Si 0.91 19.87 29.57 -169.99 -5.03 14.84 16 23 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.39 6.01 6.66 -40.82 -0.27 5.74 16 41 H 0.09 1.57 6.42 -52.48 -0.34 1.23 16 42 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 44 H 0.11 3.00 6.72 -52.49 -0.35 2.64 16 45 H 0.28 6.67 8.29 -40.82 -0.34 6.33 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -29.22 364.20 -9.82 -39.04 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.53 Total: 9.57 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -3.20 Total: -21.47 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.38 Total: -33.43 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.04 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.22 -9.82 -39.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864767518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.366 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds