Wall clock time and date at job start Tue Mar 31 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46872 * 2 1 4 4 C 1.53002 * 109.46498 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46864 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47238 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47232 * 55.00078 * 6 5 4 8 8 C 1.52999 * 109.47060 * 175.00623 * 6 5 4 9 9 N 1.46510 * 109.47136 * 295.00356 * 6 5 4 10 10 C 1.34776 * 119.99748 * 154.99953 * 9 6 5 11 11 O 1.21608 * 120.00232 * 359.97438 * 10 9 6 12 12 C 1.47431 * 119.99588 * 179.97438 * 10 9 6 13 13 C 1.39224 * 120.28436 * 355.35397 * 12 10 9 14 14 C 1.38216 * 120.09495 * 180.02562 * 13 12 10 15 15 C 1.38826 * 120.67574 * 0.02562 * 14 13 12 16 16 C 1.37595 * 120.57212 * 0.02562 * 15 14 13 17 17 C 1.40715 * 119.87536 * 359.67629 * 16 15 14 18 18 C 1.40894 * 120.32384 * 180.30024 * 17 16 15 19 19 H 1.08008 * 119.99589 * 215.85266 * 18 17 16 20 20 C 1.40267 * 120.00513 * 35.85338 * 18 17 16 21 21 N 1.30630 * 119.99628 * 8.96993 * 20 18 17 22 22 Si 1.86798 * 120.00193 * 188.97731 * 20 18 17 23 23 H 1.48499 * 109.46950 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47290 * 119.99986 * 22 20 18 25 25 H 1.48504 * 109.46912 * 239.99435 * 22 20 18 26 26 H 1.09001 * 109.47137 * 299.99858 * 1 2 3 27 27 H 1.09001 * 109.47351 * 60.00004 * 1 2 3 28 28 H 1.09003 * 109.47472 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46539 * 239.99691 * 2 1 3 30 30 H 1.08998 * 109.46865 * 120.00011 * 2 1 3 31 31 H 1.08990 * 109.47550 * 60.00343 * 3 2 1 32 32 H 1.08993 * 109.46939 * 299.99517 * 3 2 1 33 33 H 1.09001 * 109.47521 * 299.99871 * 4 3 2 34 34 H 1.09001 * 109.47341 * 60.00246 * 4 3 2 35 35 H 1.08998 * 109.47506 * 299.99971 * 5 4 3 36 36 H 1.09006 * 109.47064 * 60.00040 * 5 4 3 37 37 H 1.08997 * 109.47110 * 299.99437 * 8 6 5 38 38 H 1.08993 * 109.47779 * 60.00117 * 8 6 5 39 39 H 1.09002 * 109.47184 * 179.97438 * 8 6 5 40 40 H 0.97002 * 119.99644 * 334.99745 * 9 6 5 41 41 H 1.08003 * 119.95630 * 0.02562 * 13 12 10 42 42 H 1.08004 * 119.66284 * 179.97438 * 14 13 12 43 43 H 1.08002 * 119.71607 * 179.97438 * 15 14 13 44 44 H 1.07992 * 120.06659 * 179.97438 * 16 15 14 45 45 H 0.97004 * 119.99712 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6100 2.8849 -0.0013 7 1 5.9734 2.2951 -0.8428 8 6 6.1200 4.3219 -0.1275 9 7 6.0984 2.3016 1.2508 10 6 7.3204 1.7351 1.2987 11 8 8.0174 1.7077 0.3026 12 6 7.8120 1.1487 2.5589 13 6 7.0611 1.2616 3.7258 14 6 7.5260 0.7108 4.9052 15 6 8.7415 0.0413 4.9434 16 6 9.5065 -0.0858 3.8068 17 6 9.0530 0.4605 2.5919 18 6 9.8257 0.3304 1.4210 19 1 9.8509 1.1330 0.6987 20 6 10.5623 -0.8414 1.1932 21 7 10.3980 -1.8777 1.9714 22 14 11.7782 -0.9199 -0.2227 23 1 11.7772 0.3756 -0.9484 24 1 13.1388 -1.1897 0.3077 25 1 11.3848 -2.0085 -1.1531 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 3.9337 0.9284 0.8891 34 1 3.9329 0.9287 -0.8909 35 1 3.7163 3.3985 -0.8912 36 1 3.7170 3.3990 0.8887 37 1 5.7567 4.7558 -1.0590 38 1 5.7568 4.9117 0.7140 39 1 7.2100 4.3219 -0.1270 40 1 5.5422 2.3233 2.0453 41 1 6.1140 1.7804 3.7096 42 1 6.9380 0.8030 5.8064 43 1 9.0901 -0.3828 5.8734 44 1 10.4510 -0.6080 3.8459 45 1 10.9076 -2.6879 1.8141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864767518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:51 Heat of formation + Delta-G solvation = -69.322561 kcal Electronic energy + Delta-G solvation = -22936.502015 eV Core-core repulsion = 19723.484576 eV Total energy + Delta-G solvation = -3213.017439 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80671 -38.86810 -37.63357 -36.01003 -35.50095 -33.14544 -31.82045 -31.49471 -30.43675 -27.36560 -27.18167 -24.43947 -23.27752 -22.74169 -21.81011 -21.50803 -21.10637 -19.32068 -17.99150 -17.27993 -16.97230 -16.39296 -15.97535 -15.76685 -15.44083 -15.16504 -14.75095 -14.72362 -14.50927 -14.49050 -13.99727 -13.83137 -13.55735 -13.26292 -12.94398 -12.87173 -12.81919 -12.79454 -12.51710 -12.39893 -12.31392 -12.02842 -11.90252 -11.77107 -11.66314 -11.46955 -11.34251 -11.24921 -11.13568 -10.16179 -9.86515 -9.37610 -9.19687 -8.66968 -6.35996 0.54057 1.01263 1.32335 1.46440 1.48771 2.21397 2.39817 2.56278 2.81195 3.67733 3.73171 4.03348 4.05855 4.22749 4.32523 4.35226 4.36460 4.42192 4.51038 4.60215 4.68466 4.78216 4.80386 4.86308 4.89648 4.95281 5.01726 5.09852 5.10392 5.11173 5.23271 5.27269 5.28876 5.34326 5.35744 5.41687 5.48441 5.55771 5.63432 5.81361 5.85147 6.07469 6.13145 6.36525 6.68576 6.84152 6.95036 7.05906 7.75236 8.31565 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.004229 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.834267 B = 6619.432292 C = 6992.189635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C -0.110 4.110 4 C -0.122 4.122 5 C -0.110 4.110 6 C 0.139 3.861 7 H 0.051 0.949 8 C -0.155 4.155 9 N -0.721 5.721 10 C 0.560 3.440 11 O -0.581 6.581 12 C -0.278 4.278 13 C -0.054 4.054 14 C -0.235 4.235 15 C -0.093 4.093 16 C -0.177 4.177 17 C 0.116 3.884 18 C -0.464 4.464 19 H 0.085 0.915 20 C 0.031 3.969 21 N -0.826 5.826 22 Si 0.977 3.023 23 H -0.270 1.270 24 H -0.255 1.255 25 H -0.267 1.267 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.403 0.597 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.494 6.556 -1.162 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.147 4.147 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.035 3.965 7 H 0.070 0.930 8 C -0.213 4.213 9 N -0.374 5.374 10 C 0.353 3.647 11 O -0.463 6.463 12 C -0.283 4.283 13 C -0.073 4.073 14 C -0.254 4.254 15 C -0.111 4.111 16 C -0.197 4.197 17 C 0.112 3.888 18 C -0.494 4.494 19 H 0.103 0.897 20 C -0.183 4.183 21 N -0.453 5.453 22 Si 0.799 3.201 23 H -0.195 1.195 24 H -0.179 1.179 25 H -0.192 1.192 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.240 0.760 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.137 0.863 44 H 0.115 0.885 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.950 6.305 -1.853 16.330 hybrid contribution 0.812 -0.575 -0.263 1.029 sum -14.138 5.730 -2.116 15.401 Atomic orbital electron populations 1.21753 0.94848 1.01805 1.02217 1.21575 0.96700 0.97270 1.01377 1.21553 0.93806 0.96595 1.02769 1.21597 0.96388 0.96745 1.01213 1.21817 0.91225 0.97264 1.04476 1.20985 0.95200 0.93901 0.86463 0.93022 1.22112 1.00033 0.95968 1.03205 1.45865 1.17095 1.60646 1.13830 1.18414 0.81259 0.76943 0.88113 1.90622 1.57475 1.59988 1.38203 1.19924 0.98560 1.15856 0.93995 1.21067 0.97660 0.96763 0.91772 1.20809 0.98872 1.07441 0.98270 1.21174 0.95171 0.97555 0.97241 1.21277 1.00670 1.05245 0.92467 1.17871 0.89596 0.88055 0.93237 1.20267 1.22007 1.02045 1.05033 0.89670 1.26789 0.97130 0.94509 0.99862 1.69753 1.35497 1.03129 1.36877 0.85234 0.78095 0.78901 0.77902 1.19450 1.17866 1.19181 0.92235 0.92207 0.92785 0.92933 0.92966 0.91021 0.91097 0.93279 0.93693 0.88717 0.89622 0.89864 0.91072 0.95574 0.75994 0.84981 0.84908 0.86269 0.88545 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.13 -2.39 5.93 30.59 0.18 -2.21 16 3 C -0.11 -1.86 5.21 30.59 0.16 -1.70 16 4 C -0.12 -2.68 5.10 30.60 0.16 -2.52 16 5 C -0.11 -2.17 4.75 30.60 0.15 -2.02 16 6 C 0.14 4.03 2.58 44.99 0.12 4.15 16 7 H 0.05 1.84 7.58 -2.39 -0.02 1.82 16 8 C -0.15 -4.09 9.48 71.98 0.68 -3.41 16 9 N -0.72 -24.67 4.48 -445.78 -2.00 -26.66 16 10 C 0.56 26.43 7.69 86.66 0.67 27.10 16 11 O -0.58 -32.21 13.19 -4.06 -0.05 -32.26 16 12 C -0.28 -13.79 5.92 -19.70 -0.12 -13.90 16 13 C -0.05 -2.18 9.52 22.50 0.21 -1.96 16 14 C -0.23 -9.22 10.03 22.41 0.22 -9.00 16 15 C -0.09 -4.08 10.01 22.26 0.22 -3.85 16 16 C -0.18 -9.31 8.62 22.72 0.20 -9.12 16 17 C 0.12 6.53 5.48 -21.11 -0.12 6.41 16 18 C -0.46 -27.42 7.78 23.41 0.18 -27.24 16 19 H 0.09 5.33 5.73 -2.91 -0.02 5.31 16 20 C 0.03 1.71 5.25 85.36 0.45 2.16 16 21 N -0.83 -45.16 11.25 21.88 0.25 -44.91 16 22 Si 0.98 42.81 29.57 68.60 2.03 44.84 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.25 7.75 -2.39 -0.02 1.23 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.40 11.39 6.66 -92.71 -0.62 10.78 16 41 H 0.13 4.08 6.42 -2.91 -0.02 4.06 16 42 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 43 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 44 H 0.10 5.30 6.72 -2.91 -0.02 5.28 16 45 H 0.29 14.19 8.29 -92.71 -0.77 13.42 16 Total: -1.00 -68.84 364.20 4.64 -64.20 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.34 Total: 33.37 kcal Atomic # 6 Polarization: -42.64 SS G_CDS: 4.08 Total: -38.57 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.75 Total: -71.58 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.05 Total: -32.26 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -68.84 4.64 -64.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864767518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.127 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds