Wall clock time and date at job start Tue Mar 31 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47093 * 2 1 4 4 C 1.52996 * 109.46678 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46678 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47093 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47076 * 305.00327 * 6 5 4 8 8 C 1.52994 * 109.46927 * 185.00216 * 6 5 4 9 9 N 1.46494 * 109.46984 * 64.99905 * 6 5 4 10 10 C 1.34776 * 120.00161 * 204.99659 * 9 6 5 11 11 O 1.21608 * 119.99839 * 0.02562 * 10 9 6 12 12 C 1.47431 * 120.00197 * 179.97438 * 10 9 6 13 13 C 1.39220 * 120.28302 * 354.91982 * 12 10 9 14 14 C 1.38225 * 120.09270 * 180.29589 * 13 12 10 15 15 C 1.38821 * 120.67571 * 359.43765 * 14 13 12 16 16 C 1.37603 * 120.56872 * 0.56298 * 15 14 13 17 17 C 1.40708 * 119.88184 * 359.72179 * 16 15 14 18 18 C 1.40890 * 120.32848 * 180.02562 * 17 16 15 19 19 H 1.07990 * 120.00154 * 141.30259 * 18 17 16 20 20 C 1.40280 * 119.99795 * 321.30001 * 18 17 16 21 21 N 1.30621 * 120.00148 * 174.57477 * 20 18 17 22 22 Si 1.86804 * 119.99776 * 354.57054 * 20 18 17 23 23 H 1.48501 * 109.46797 * 89.16355 * 22 20 18 24 24 H 1.48494 * 109.47065 * 209.15890 * 22 20 18 25 25 H 1.48497 * 109.47474 * 329.16535 * 22 20 18 26 26 H 1.09002 * 109.46990 * 299.99943 * 1 2 3 27 27 H 1.09003 * 109.46601 * 60.00074 * 1 2 3 28 28 H 1.08997 * 109.46960 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46990 * 240.00057 * 2 1 3 30 30 H 1.08997 * 109.47277 * 120.00454 * 2 1 3 31 31 H 1.08997 * 109.46522 * 59.99874 * 3 2 1 32 32 H 1.08997 * 109.46985 * 299.99730 * 3 2 1 33 33 H 1.08994 * 109.47631 * 60.00073 * 4 3 2 34 34 H 1.09003 * 109.47435 * 299.99823 * 4 3 2 35 35 H 1.09002 * 109.47156 * 60.00022 * 5 4 3 36 36 H 1.08991 * 109.47371 * 299.99755 * 5 4 3 37 37 H 1.09002 * 109.46988 * 179.97438 * 8 6 5 38 38 H 1.09001 * 109.47283 * 299.99499 * 8 6 5 39 39 H 1.08996 * 109.47662 * 60.00293 * 8 6 5 40 40 H 0.97000 * 119.99902 * 25.00498 * 9 6 5 41 41 H 1.08001 * 119.95354 * 0.02562 * 13 12 10 42 42 H 1.08007 * 119.65957 * 179.70288 * 14 13 12 43 43 H 1.07997 * 119.71990 * 180.30914 * 15 14 13 44 44 H 1.08001 * 120.05979 * 179.74666 * 16 15 14 45 45 H 0.96999 * 120.00539 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6101 2.8850 -0.0013 7 1 5.9734 2.2959 0.8408 8 6 6.1200 4.3221 0.1238 9 7 6.0984 2.3007 -1.2528 10 6 7.3203 1.7342 -1.3004 11 8 8.0174 1.7077 -0.3043 12 6 7.8115 1.1457 -2.5597 13 6 6.9796 1.0769 -3.6739 14 6 7.4422 0.5188 -4.8508 15 6 8.7391 0.0321 -4.9421 16 6 9.5848 0.0862 -3.8579 17 6 9.1366 0.6441 -2.6464 18 6 9.9947 0.7047 -1.5306 19 1 9.9818 1.5709 -0.8859 20 6 10.8658 -0.3603 -1.2571 21 7 11.7349 -0.2606 -0.2871 22 14 10.7827 -1.9212 -2.2800 23 1 11.6809 -1.7910 -3.4554 24 1 11.2129 -3.0778 -1.4541 25 1 9.3884 -2.1355 -2.7439 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9564 -0.8900 33 1 3.9330 0.9288 -0.8908 34 1 3.9338 0.9285 0.8891 35 1 3.7171 3.3991 0.8887 36 1 3.7164 3.3986 -0.8912 37 1 7.2100 4.3220 0.1243 38 1 5.7567 4.9111 -0.7183 39 1 5.7568 4.7568 1.0550 40 1 5.5422 2.3217 -2.0473 41 1 5.9700 1.4562 -3.6173 42 1 6.7893 0.4646 -5.7095 43 1 9.0861 -0.3963 -5.8707 44 1 10.5908 -0.2986 -3.9369 45 1 12.3370 -0.9972 -0.0977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864767520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:55 Heat of formation + Delta-G solvation = -50.283906 kcal Electronic energy + Delta-G solvation = -22997.448123 eV Core-core repulsion = 19785.256262 eV Total energy + Delta-G solvation = -3212.191861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.23569 -37.48555 -36.39699 -34.83786 -33.60925 -31.88268 -30.54425 -30.44224 -29.12723 -26.41192 -25.34846 -22.94325 -22.19745 -21.32630 -21.01550 -20.17644 -19.50535 -17.52666 -16.70622 -16.03365 -15.43098 -15.22247 -14.36447 -14.15019 -14.04779 -14.02450 -13.82866 -13.50361 -13.39500 -12.87657 -12.69367 -12.54034 -12.28415 -12.06760 -11.91355 -11.78137 -11.65256 -11.47164 -11.11684 -10.97304 -10.93431 -10.73755 -10.69946 -10.53513 -10.42773 -10.29762 -10.05793 -9.77127 -9.24526 -8.45722 -8.33507 -7.80921 -7.57019 -6.84972 -4.44020 2.12150 2.60548 3.10479 3.19389 3.30217 3.95394 3.99156 4.05156 4.57395 4.63568 4.81443 4.93232 5.11058 5.16942 5.22708 5.39716 5.45932 5.59434 5.62537 5.64717 5.73560 5.77912 5.83221 5.86888 5.93048 5.95129 5.96019 6.02188 6.04857 6.13299 6.23074 6.30808 6.38363 6.47809 6.51716 6.55843 6.80843 7.11596 7.20930 7.27266 7.39740 7.58916 7.76404 8.02095 8.38890 8.51084 8.65199 8.86123 9.41069 10.13405 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.004241 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.217338 B = 6601.160190 C = 6968.400866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.122 4.122 5 C -0.123 4.123 6 C 0.144 3.856 7 H 0.084 0.916 8 C -0.162 4.162 9 N -0.742 5.742 10 C 0.561 3.439 11 O -0.525 6.525 12 C -0.245 4.245 13 C -0.043 4.043 14 C -0.252 4.252 15 C -0.066 4.066 16 C -0.227 4.227 17 C 0.118 3.882 18 C -0.397 4.397 19 H 0.115 0.885 20 C 0.079 3.921 21 N -0.799 5.799 22 Si 0.908 3.092 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.243 1.243 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.389 0.611 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.984 2.554 -1.344 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.159 4.159 5 C -0.161 4.161 6 C 0.039 3.961 7 H 0.102 0.898 8 C -0.220 4.220 9 N -0.396 5.396 10 C 0.353 3.647 11 O -0.402 6.402 12 C -0.250 4.250 13 C -0.062 4.062 14 C -0.272 4.272 15 C -0.085 4.085 16 C -0.246 4.246 17 C 0.113 3.887 18 C -0.424 4.424 19 H 0.132 0.868 20 C -0.141 4.141 21 N -0.423 5.423 22 Si 0.734 3.266 23 H -0.195 1.195 24 H -0.217 1.217 25 H -0.167 1.167 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.223 0.777 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.123 0.877 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.244 2.467 -0.380 15.447 hybrid contribution -0.197 -0.700 -0.847 1.116 sum -15.441 1.767 -1.227 15.590 Atomic orbital electron populations 1.21778 0.96182 1.01402 1.01568 1.21553 0.95507 0.97217 1.02226 1.21618 0.95729 0.96528 1.01674 1.21619 0.94687 0.96744 1.02881 1.21880 0.94721 0.97201 1.02344 1.20771 0.92447 0.94082 0.88770 0.89840 1.22174 1.02553 0.96380 1.00907 1.46085 1.18920 1.62291 1.12350 1.18343 0.80082 0.77308 0.88968 1.90764 1.55420 1.57440 1.36539 1.19511 0.95412 1.16788 0.93271 1.20785 0.96706 0.95861 0.92864 1.20297 0.96949 1.12027 0.97905 1.20737 0.93847 0.96937 0.96966 1.21193 0.99279 1.10252 0.93844 1.17570 0.90110 0.88545 0.92437 1.19934 1.10617 1.04275 1.07591 0.86784 1.26290 0.92146 1.00884 0.94745 1.69541 1.14185 1.33104 1.25456 0.86401 0.81307 0.79775 0.79093 1.19472 1.21746 1.16659 0.92942 0.92876 0.92959 0.91939 0.92072 0.92288 0.92220 0.91489 0.91895 0.91029 0.91799 0.91810 0.93004 0.92497 0.77666 0.88708 0.88559 0.88587 0.87719 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.18 5.93 -26.73 -0.16 -1.34 16 3 C -0.12 -1.10 5.21 -26.73 -0.14 -1.23 16 4 C -0.12 -1.36 5.10 -26.73 -0.14 -1.50 16 5 C -0.12 -1.35 4.75 -26.73 -0.13 -1.48 16 6 C 0.14 2.13 2.57 -67.93 -0.17 1.96 16 7 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 8 C -0.16 -2.27 9.48 37.15 0.35 -1.92 16 9 N -0.74 -12.57 4.48 -54.88 -0.25 -12.82 16 10 C 0.56 12.64 7.69 -12.52 -0.10 12.55 16 11 O -0.52 -13.94 13.34 5.27 0.07 -13.87 16 12 C -0.25 -5.73 5.92 -104.37 -0.62 -6.35 16 13 C -0.04 -0.86 9.52 -39.22 -0.37 -1.23 16 14 C -0.25 -4.94 10.03 -39.37 -0.39 -5.34 16 15 C -0.07 -1.38 10.01 -39.60 -0.40 -1.78 16 16 C -0.23 -5.38 6.94 -38.88 -0.27 -5.65 16 17 C 0.12 3.05 5.04 -106.54 -0.54 2.51 16 18 C -0.40 -11.23 8.08 -37.81 -0.31 -11.53 16 19 H 0.11 3.56 6.37 -52.49 -0.33 3.23 16 20 C 0.08 2.13 5.51 -17.30 -0.10 2.04 16 21 N -0.80 -22.09 13.92 55.56 0.77 -21.31 16 22 Si 0.91 21.07 24.49 -169.99 -4.16 16.90 16 23 H -0.27 -5.91 6.70 56.52 0.38 -5.54 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.24 -5.78 6.68 56.52 0.38 -5.40 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.39 5.65 6.66 -40.82 -0.27 5.38 16 41 H 0.09 1.52 6.43 -52.49 -0.34 1.19 16 42 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.11 2.45 4.89 -52.49 -0.26 2.20 16 45 H 0.29 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -29.95 358.34 -8.79 -38.74 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.52 Total: 8.09 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -3.10 Total: -21.12 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.53 Total: -34.14 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.07 Total: -13.87 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.16 Total: 16.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.95 -8.79 -38.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864767520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.546 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds