Wall clock time and date at job start Tue Mar 31 2020 06:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46893 * 2 1 4 4 C 1.52995 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47235 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47398 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47132 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46923 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99983 * 179.97438 * 8 7 6 10 10 O 1.21607 * 119.99826 * 0.02562 * 9 8 7 11 11 C 1.47437 * 120.00283 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.27694 * 355.71167 * 11 9 8 13 13 C 1.38223 * 120.09019 * 180.27968 * 12 11 9 14 14 C 1.38827 * 120.67436 * 359.69359 * 13 12 11 15 15 C 1.37596 * 120.57166 * 0.02562 * 14 13 12 16 16 C 1.40714 * 119.88143 * 0.02562 * 15 14 13 17 17 C 1.40885 * 120.33020 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00278 * 216.32858 * 17 16 15 19 19 C 1.40279 * 119.99934 * 36.32229 * 17 16 15 20 20 N 1.30628 * 120.00021 * 190.51200 * 19 17 16 21 21 Si 1.86805 * 119.99864 * 10.51087 * 19 17 16 22 22 H 1.48495 * 109.47237 * 267.22291 * 21 19 17 23 23 H 1.48498 * 109.47138 * 27.22377 * 21 19 17 24 24 H 1.48504 * 109.46514 * 147.22203 * 21 19 17 25 25 H 1.08996 * 109.47125 * 60.00369 * 1 2 3 26 26 H 1.09000 * 109.46538 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47011 * 299.99865 * 1 2 3 28 28 H 1.09003 * 109.47473 * 240.00378 * 2 1 3 29 29 H 1.08996 * 109.47623 * 119.99454 * 2 1 3 30 30 H 1.09003 * 109.46752 * 59.99936 * 3 2 1 31 31 H 1.09001 * 109.47224 * 300.00098 * 3 2 1 32 32 H 1.09003 * 109.47296 * 60.00280 * 4 3 2 33 33 H 1.09001 * 109.47105 * 300.00181 * 4 3 2 34 34 H 1.09001 * 109.47209 * 60.00230 * 5 4 3 35 35 H 1.09001 * 109.47192 * 300.00092 * 5 4 3 36 36 H 1.09001 * 109.46791 * 59.99927 * 6 5 4 37 37 H 1.09001 * 109.46985 * 300.00171 * 6 5 4 38 38 H 1.09001 * 109.47351 * 60.00259 * 7 6 5 39 39 H 1.09001 * 109.47316 * 299.99957 * 7 6 5 40 40 H 0.97001 * 120.00283 * 0.02562 * 8 7 6 41 41 H 1.08002 * 119.96175 * 359.97438 * 12 11 9 42 42 H 1.08002 * 119.66391 * 179.71666 * 13 12 11 43 43 H 1.08000 * 119.71712 * 180.02562 * 14 13 12 44 44 H 1.07999 * 120.06224 * 180.02562 * 15 14 13 45 45 H 0.96995 * 120.00424 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0798 2.8851 0.0013 6 6 5.6099 2.8853 0.0013 7 6 6.1198 4.3278 0.0026 8 7 7.5848 4.3279 0.0032 9 6 8.2586 5.4951 0.0038 10 8 7.6504 6.5482 0.0044 11 6 9.7329 5.4953 0.0039 12 6 10.4350 4.2963 0.0932 13 6 11.8172 4.3014 0.0987 14 6 12.5215 5.4944 0.0094 15 6 11.8555 6.6947 -0.0857 16 6 10.4486 6.7173 -0.0924 17 6 9.7571 7.9410 -0.1890 18 1 8.8337 8.0836 0.3525 19 6 10.2682 8.9742 -0.9883 20 7 9.7477 10.1704 -0.9210 21 14 11.6930 8.6394 -2.1491 22 1 12.9732 8.9518 -1.4644 23 1 11.6811 7.2091 -2.5478 24 1 11.5574 9.4915 -3.3578 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9288 -0.8891 33 1 3.9329 0.9290 0.8908 34 1 3.7161 3.3987 0.8913 35 1 3.7168 3.3992 -0.8887 36 1 5.9732 2.3718 -0.8889 37 1 5.9732 2.3710 0.8910 38 1 5.7564 4.8409 0.8930 39 1 5.7564 4.8425 -0.8869 40 1 8.0698 3.4879 0.0024 41 1 9.8990 3.3613 0.1632 42 1 12.3549 3.3676 0.1729 43 1 13.6014 5.4804 0.0147 44 1 12.4116 7.6179 -0.1552 45 1 10.1008 10.8848 -1.4740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869379252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:58 Heat of formation + Delta-G solvation = -55.331155 kcal Electronic energy + Delta-G solvation = -21920.954012 eV Core-core repulsion = 18708.543285 eV Total energy + Delta-G solvation = -3212.410726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.05436 -37.29484 -36.71420 -34.94473 -33.69638 -32.85782 -30.53354 -30.42552 -29.21160 -26.09180 -25.12148 -22.89879 -22.03916 -21.26313 -21.13082 -20.76018 -19.34286 -17.56673 -16.61302 -16.29728 -15.36910 -15.28501 -15.18097 -14.28246 -14.14963 -14.09493 -14.07396 -13.57054 -13.41930 -13.20595 -12.63902 -12.55938 -12.31384 -12.23295 -12.05221 -11.92391 -11.51785 -11.37435 -11.25319 -11.09712 -10.92770 -10.82701 -10.71268 -10.61910 -10.58911 -10.42647 -10.13141 -9.79595 -9.24401 -8.44903 -8.35840 -7.80422 -7.57661 -6.88717 -4.46934 2.12299 2.61285 3.09317 3.18203 3.29667 3.90374 3.97008 4.04486 4.49412 4.61671 4.63471 4.78509 4.88983 4.97935 5.14200 5.18067 5.35764 5.40569 5.47911 5.51133 5.55561 5.66166 5.74812 5.79526 5.80893 5.81493 5.85556 5.92653 6.00332 6.05028 6.06094 6.16597 6.28060 6.28480 6.44767 6.52569 6.80929 7.10446 7.15328 7.25200 7.40755 7.60124 7.77316 8.03019 8.35987 8.49619 8.65749 8.88524 9.39978 10.07985 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025024 B = 0.002726 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.651453 B =10270.271296 C =11084.676223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.130 4.130 7 C 0.124 3.876 8 N -0.750 5.750 9 C 0.560 3.440 10 O -0.529 6.529 11 C -0.249 4.249 12 C -0.042 4.042 13 C -0.255 4.255 14 C -0.066 4.066 15 C -0.226 4.226 16 C 0.116 3.884 17 C -0.401 4.401 18 H 0.124 0.876 19 C 0.078 3.922 20 N -0.793 5.793 21 Si 0.907 3.093 22 H -0.268 1.268 23 H -0.243 1.243 24 H -0.289 1.289 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.391 0.609 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.475 -16.211 0.228 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.155 4.155 6 C -0.168 4.168 7 C 0.000 4.000 8 N -0.405 5.405 9 C 0.353 3.647 10 O -0.407 6.407 11 C -0.254 4.254 12 C -0.060 4.060 13 C -0.275 4.275 14 C -0.084 4.084 15 C -0.245 4.245 16 C 0.111 3.889 17 C -0.428 4.428 18 H 0.142 0.858 19 C -0.142 4.142 20 N -0.417 5.417 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.166 1.166 24 H -0.216 1.216 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.225 0.775 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.122 0.878 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.010 -15.120 0.171 18.134 hybrid contribution 0.917 -0.448 -0.540 1.154 sum -9.093 -15.568 -0.368 18.033 Atomic orbital electron populations 1.21785 0.96048 1.01445 1.01822 1.21547 0.95737 0.97147 1.01910 1.21641 0.95587 0.96548 1.02145 1.21602 0.95181 0.96875 1.02017 1.21513 0.94686 0.96760 1.02551 1.21797 0.95925 0.96632 1.02413 1.21152 0.81148 0.95877 1.01816 1.46003 1.06057 1.09002 1.79412 1.18357 0.87927 0.82638 0.75826 1.90723 1.70139 1.30436 1.49368 1.19435 0.90895 0.93661 1.21428 1.20777 0.94189 0.95358 0.95723 1.20284 0.93646 0.96571 1.16957 1.20737 0.97766 0.92993 0.96947 1.21151 0.94571 0.96650 1.12110 1.17560 0.90807 0.92198 0.88292 1.20199 1.08537 0.92886 1.21192 0.85848 1.26392 0.96730 0.93750 0.97350 1.69568 1.37518 1.01509 1.33063 0.86386 0.80432 0.80784 0.79078 1.19420 1.16577 1.21607 0.92779 0.92938 0.92773 0.92135 0.92135 0.92006 0.91998 0.92043 0.92050 0.91689 0.91687 0.91554 0.91573 0.92261 0.92219 0.77528 0.88706 0.88552 0.88584 0.87788 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 4 C -0.12 -0.96 5.21 -26.74 -0.14 -1.10 16 5 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 6 C -0.13 -1.39 5.33 -26.73 -0.14 -1.53 16 7 C 0.12 1.87 5.67 -4.04 -0.02 1.85 16 8 N -0.75 -13.17 5.51 -61.38 -0.34 -13.51 16 9 C 0.56 12.98 7.72 -12.51 -0.10 12.89 16 10 O -0.53 -14.38 13.54 5.27 0.07 -14.31 16 11 C -0.25 -5.94 5.92 -104.37 -0.62 -6.55 16 12 C -0.04 -0.84 9.52 -39.22 -0.37 -1.21 16 13 C -0.26 -5.05 10.03 -39.37 -0.39 -5.45 16 14 C -0.07 -1.38 10.01 -39.60 -0.40 -1.78 16 15 C -0.23 -5.40 7.00 -38.88 -0.27 -5.67 16 16 C 0.12 3.04 5.03 -106.54 -0.54 2.50 16 17 C -0.40 -11.43 8.31 -37.81 -0.31 -11.74 16 18 H 0.12 3.89 5.96 -52.49 -0.31 3.58 16 19 C 0.08 2.11 5.47 -17.30 -0.09 2.02 16 20 N -0.79 -21.79 13.92 55.56 0.77 -21.02 16 21 Si 0.91 20.96 24.52 -169.99 -4.17 16.79 16 22 H -0.27 -5.89 6.76 56.52 0.38 -5.50 16 23 H -0.24 -5.74 6.73 56.52 0.38 -5.36 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.39 5.76 6.52 -40.82 -0.27 5.49 16 41 H 0.09 1.54 6.42 -52.49 -0.34 1.20 16 42 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 43 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.10 2.45 5.01 -52.49 -0.26 2.18 16 45 H 0.29 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -30.45 360.04 -9.25 -39.69 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.54 Total: 6.61 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -3.47 Total: -19.69 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.44 Total: -34.53 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.07 Total: -14.31 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.17 Total: 16.79 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.45 -9.25 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869379252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.639 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds