Wall clock time and date at job start Tue Mar 31 2020 06:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46893 * 2 1 4 4 C 1.52995 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47235 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47398 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47132 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46923 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99983 * 179.97438 * 8 7 6 10 10 O 1.21607 * 119.99826 * 0.02562 * 9 8 7 11 11 C 1.47437 * 120.00283 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.27694 * 355.71167 * 11 9 8 13 13 C 1.38223 * 120.09019 * 180.27968 * 12 11 9 14 14 C 1.38827 * 120.67436 * 359.69359 * 13 12 11 15 15 C 1.37596 * 120.57166 * 0.02562 * 14 13 12 16 16 C 1.40714 * 119.88143 * 0.02562 * 15 14 13 17 17 C 1.40885 * 120.33020 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00278 * 216.32858 * 17 16 15 19 19 C 1.40279 * 119.99934 * 36.32229 * 17 16 15 20 20 N 1.30628 * 120.00021 * 190.51200 * 19 17 16 21 21 Si 1.86805 * 119.99864 * 10.51087 * 19 17 16 22 22 H 1.48495 * 109.47237 * 267.22291 * 21 19 17 23 23 H 1.48498 * 109.47138 * 27.22377 * 21 19 17 24 24 H 1.48504 * 109.46514 * 147.22203 * 21 19 17 25 25 H 1.08996 * 109.47125 * 60.00369 * 1 2 3 26 26 H 1.09000 * 109.46538 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47011 * 299.99865 * 1 2 3 28 28 H 1.09003 * 109.47473 * 240.00378 * 2 1 3 29 29 H 1.08996 * 109.47623 * 119.99454 * 2 1 3 30 30 H 1.09003 * 109.46752 * 59.99936 * 3 2 1 31 31 H 1.09001 * 109.47224 * 300.00098 * 3 2 1 32 32 H 1.09003 * 109.47296 * 60.00280 * 4 3 2 33 33 H 1.09001 * 109.47105 * 300.00181 * 4 3 2 34 34 H 1.09001 * 109.47209 * 60.00230 * 5 4 3 35 35 H 1.09001 * 109.47192 * 300.00092 * 5 4 3 36 36 H 1.09001 * 109.46791 * 59.99927 * 6 5 4 37 37 H 1.09001 * 109.46985 * 300.00171 * 6 5 4 38 38 H 1.09001 * 109.47351 * 60.00259 * 7 6 5 39 39 H 1.09001 * 109.47316 * 299.99957 * 7 6 5 40 40 H 0.97001 * 120.00283 * 0.02562 * 8 7 6 41 41 H 1.08002 * 119.96175 * 359.97438 * 12 11 9 42 42 H 1.08002 * 119.66391 * 179.71666 * 13 12 11 43 43 H 1.08000 * 119.71712 * 180.02562 * 14 13 12 44 44 H 1.07999 * 120.06224 * 180.02562 * 15 14 13 45 45 H 0.96995 * 120.00424 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0798 2.8851 0.0013 6 6 5.6099 2.8853 0.0013 7 6 6.1198 4.3278 0.0026 8 7 7.5848 4.3279 0.0032 9 6 8.2586 5.4951 0.0038 10 8 7.6504 6.5482 0.0044 11 6 9.7329 5.4953 0.0039 12 6 10.4350 4.2963 0.0932 13 6 11.8172 4.3014 0.0987 14 6 12.5215 5.4944 0.0094 15 6 11.8555 6.6947 -0.0857 16 6 10.4486 6.7173 -0.0924 17 6 9.7571 7.9410 -0.1890 18 1 8.8337 8.0836 0.3525 19 6 10.2682 8.9742 -0.9883 20 7 9.7477 10.1704 -0.9210 21 14 11.6930 8.6394 -2.1491 22 1 12.9732 8.9518 -1.4644 23 1 11.6811 7.2091 -2.5478 24 1 11.5574 9.4915 -3.3578 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9288 -0.8891 33 1 3.9329 0.9290 0.8908 34 1 3.7161 3.3987 0.8913 35 1 3.7168 3.3992 -0.8887 36 1 5.9732 2.3718 -0.8889 37 1 5.9732 2.3710 0.8910 38 1 5.7564 4.8409 0.8930 39 1 5.7564 4.8425 -0.8869 40 1 8.0698 3.4879 0.0024 41 1 9.8990 3.3613 0.1632 42 1 12.3549 3.3676 0.1729 43 1 13.6014 5.4804 0.0147 44 1 12.4116 7.6179 -0.1552 45 1 10.1008 10.8848 -1.4740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869379252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:58 Heat of formation + Delta-G solvation = -73.440162 kcal Electronic energy + Delta-G solvation = -21921.739277 eV Core-core repulsion = 18708.543285 eV Total energy + Delta-G solvation = -3213.195992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81577 -38.85862 -37.69644 -36.18928 -35.49312 -34.03629 -32.29356 -31.97994 -30.31258 -27.46501 -26.56697 -24.21916 -23.43466 -22.55646 -22.07422 -21.73513 -20.96639 -19.45818 -18.29559 -17.17643 -17.07016 -16.77874 -16.25522 -15.82190 -15.78567 -15.35144 -15.33885 -14.81154 -14.51699 -14.36140 -14.28667 -13.95232 -13.79632 -13.29584 -13.19449 -13.02550 -12.90373 -12.68214 -12.51078 -12.20877 -12.10948 -12.08370 -12.02739 -11.76198 -11.61749 -11.51770 -11.31122 -11.30576 -11.08554 -10.31861 -9.99195 -9.51298 -9.41160 -8.82574 -6.48864 0.34381 0.83868 1.23033 1.36833 1.45973 2.09688 2.26105 2.45657 2.71217 3.53661 3.75182 3.98360 4.04178 4.15921 4.20475 4.26320 4.29683 4.41631 4.44001 4.45318 4.65757 4.68997 4.73770 4.75595 4.84307 4.86422 4.99988 5.00692 5.04553 5.04941 5.12794 5.20763 5.29587 5.30014 5.30535 5.42795 5.47308 5.52325 5.56160 5.64360 5.69621 5.87507 5.96803 6.27756 6.47518 6.68205 6.78932 6.93280 7.64983 8.21847 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025024 B = 0.002726 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.651453 B =10270.271296 C =11084.676223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.115 4.115 7 C 0.121 3.879 8 N -0.727 5.727 9 C 0.550 3.450 10 O -0.582 6.582 11 C -0.268 4.268 12 C -0.039 4.039 13 C -0.230 4.230 14 C -0.062 4.062 15 C -0.247 4.247 16 C 0.098 3.902 17 C -0.451 4.451 18 H 0.070 0.930 19 C 0.033 3.967 20 N -0.850 5.850 21 Si 0.969 3.031 22 H -0.247 1.247 23 H -0.249 1.249 24 H -0.280 1.280 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.043 0.957 40 H 0.409 0.591 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.137 0.863 44 H 0.102 0.898 45 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.399 -20.897 -0.109 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.152 4.152 7 C -0.002 4.002 8 N -0.381 5.381 9 C 0.343 3.657 10 O -0.463 6.463 11 C -0.273 4.273 12 C -0.058 4.058 13 C -0.249 4.249 14 C -0.080 4.080 15 C -0.266 4.266 16 C 0.094 3.906 17 C -0.480 4.480 18 H 0.088 0.912 19 C -0.180 4.180 20 N -0.476 5.476 21 Si 0.791 3.209 22 H -0.172 1.172 23 H -0.173 1.173 24 H -0.207 1.207 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.246 0.754 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.119 0.881 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.935 -19.872 -0.150 21.398 hybrid contribution 0.253 0.659 -0.316 0.773 sum -7.682 -19.213 -0.466 20.697 Atomic orbital electron populations 1.21796 0.95809 1.01870 1.01749 1.21538 0.95985 0.96551 1.02163 1.21632 0.95362 0.97082 1.01860 1.21545 0.95356 0.95579 1.02572 1.21502 0.93767 0.97942 1.02200 1.21716 0.96577 0.93167 1.03778 1.21319 0.79522 0.98995 1.00400 1.45777 1.07130 1.08057 1.77151 1.18601 0.88337 0.83319 0.75449 1.90726 1.71079 1.32783 1.51714 1.19838 0.91546 0.94672 1.21213 1.21246 0.94963 0.95551 0.94007 1.20963 0.93537 0.98083 1.12282 1.21265 1.00076 0.92091 0.94576 1.21252 0.93538 0.98298 1.13503 1.17838 0.92317 0.92162 0.88259 1.19947 1.07997 0.95631 1.24423 0.91157 1.27154 0.99265 0.93232 0.98394 1.69626 1.40108 1.02518 1.35385 0.85458 0.78097 0.79992 0.77319 1.17150 1.17307 1.20665 0.92892 0.92280 0.92853 0.91884 0.91840 0.92308 0.92360 0.91483 0.91410 0.92094 0.92208 0.90177 0.90039 0.93688 0.93886 0.75373 0.84045 0.83626 0.84497 0.88055 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.49 5.93 30.60 0.18 -1.31 16 3 C -0.12 -1.65 5.21 30.60 0.16 -1.49 16 4 C -0.11 -1.56 5.21 30.59 0.16 -1.40 16 5 C -0.12 -2.01 5.21 30.59 0.16 -1.85 16 6 C -0.11 -2.19 5.33 30.60 0.16 -2.03 16 7 C 0.12 3.63 5.67 86.38 0.49 4.12 16 8 N -0.73 -24.71 5.51 -466.35 -2.57 -27.27 16 9 C 0.55 26.12 7.72 86.67 0.67 26.79 16 10 O -0.58 -33.99 13.54 -4.05 -0.05 -34.05 16 11 C -0.27 -12.60 5.92 -19.70 -0.12 -12.71 16 12 C -0.04 -1.40 9.52 22.50 0.21 -1.18 16 13 C -0.23 -7.62 10.03 22.41 0.22 -7.39 16 14 C -0.06 -2.29 10.01 22.26 0.22 -2.07 16 15 C -0.25 -11.44 7.00 22.72 0.16 -11.29 16 16 C 0.10 5.24 5.03 -21.11 -0.11 5.13 16 17 C -0.45 -27.67 8.31 23.41 0.19 -27.47 16 18 H 0.07 4.94 5.96 -2.91 -0.02 4.92 16 19 C 0.03 1.91 5.47 85.37 0.47 2.38 16 20 N -0.85 -50.41 13.92 21.88 0.30 -50.11 16 21 Si 0.97 44.36 24.52 68.60 1.68 46.04 16 22 H -0.25 -10.27 6.76 99.48 0.67 -9.60 16 23 H -0.25 -11.47 6.73 99.48 0.67 -10.80 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.41 10.62 6.52 -92.71 -0.60 10.01 16 41 H 0.14 3.68 6.42 -2.91 -0.02 3.66 16 42 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 44 H 0.10 4.68 5.01 -2.91 -0.01 4.66 16 45 H 0.29 15.49 8.29 -92.71 -0.77 14.72 16 Total: -1.00 -73.95 360.04 3.61 -70.35 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.29 Total: 27.84 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 3.96 Total: -32.80 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -2.26 Total: -77.38 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.05 Total: -34.05 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.68 Total: 46.04 kcal Total: -73.95 3.61 -70.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869379252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.094 kcal (2) G-P(sol) polarization free energy of solvation -73.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds