Wall clock time and date at job start Tue Mar 31 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00071 * 2 1 4 4 C 1.53002 * 109.46847 * 125.00217 * 3 2 1 5 5 C 1.53009 * 109.47102 * 185.57982 * 4 3 2 6 6 H 1.09007 * 109.46586 * 54.40259 * 5 4 3 7 7 C 1.53000 * 109.47349 * 294.41014 * 5 4 3 8 8 O 1.42904 * 109.46775 * 304.99703 * 7 5 4 9 9 C 1.35900 * 116.99807 * 179.97438 * 8 7 5 10 10 C 1.38733 * 120.05728 * 359.73019 * 9 8 7 11 11 C 1.38138 * 119.94567 * 179.74024 * 10 9 8 12 12 C 1.38270 * 120.05207 * 0.50888 * 11 10 9 13 13 C 1.38264 * 120.11380 * 359.76430 * 12 11 10 14 14 C 1.38139 * 120.05192 * 359.97438 * 13 12 11 15 15 N 1.46898 * 109.47366 * 174.40182 * 5 4 3 16 16 C 1.46895 * 111.00492 * 276.11422 * 15 5 4 17 17 C 1.52999 * 109.47379 * 175.03576 * 16 15 5 18 18 C 1.50696 * 109.47185 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99917 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99640 * 179.97438 * 18 17 16 21 21 N 1.31503 * 120.00339 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99697 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47022 * 89.99975 * 22 20 18 24 24 H 1.48492 * 109.47295 * 209.99940 * 22 20 18 25 25 H 1.48503 * 109.47195 * 330.00304 * 22 20 18 26 26 H 1.08003 * 119.99911 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00009 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99911 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47515 * 5.00432 * 3 2 1 30 30 H 1.08998 * 109.47381 * 244.99776 * 3 2 1 31 31 H 1.08997 * 109.47455 * 65.58307 * 4 3 2 32 32 H 1.08995 * 109.47609 * 305.57883 * 4 3 2 33 33 H 1.09000 * 109.47069 * 184.99661 * 7 5 4 34 34 H 1.08998 * 109.46810 * 64.99268 * 7 5 4 35 35 H 1.08006 * 120.02386 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.97691 * 180.27105 * 11 10 9 37 37 H 1.08003 * 119.94181 * 179.74628 * 12 11 10 38 38 H 1.07994 * 119.97182 * 179.97438 * 13 12 11 39 39 H 1.08003 * 120.02836 * 179.97438 * 14 13 12 40 40 H 1.00901 * 110.99951 * 152.15116 * 15 5 4 41 41 H 1.09001 * 109.46628 * 295.03170 * 16 15 5 42 42 H 1.08998 * 109.47384 * 55.02862 * 16 15 5 43 43 H 1.09003 * 109.46758 * 299.99938 * 17 16 15 44 44 H 1.08998 * 109.47446 * 59.99324 * 17 16 15 45 45 H 0.97004 * 120.00652 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.6986 2.7093 1.2640 6 1 2.9300 3.4812 1.3042 7 6 4.5761 2.9272 0.0298 8 8 5.5090 1.8510 -0.0874 9 6 6.3685 1.8914 -1.1392 10 6 6.3115 2.9421 -2.0432 11 6 7.1899 2.9837 -3.1086 12 6 8.1185 1.9736 -3.2802 13 6 8.1736 0.9223 -2.3838 14 6 7.3009 0.8791 -1.3138 15 7 4.5286 2.7812 2.4739 16 6 3.7204 3.1427 3.6461 17 6 4.5912 3.0869 4.9029 18 6 3.7620 3.4571 6.1054 19 1 2.7183 3.7076 5.9853 20 6 4.3357 3.4760 7.3591 21 7 5.6064 3.1705 7.5054 22 14 3.3079 3.9357 8.8497 23 1 2.6916 2.7120 9.4224 24 1 4.1752 4.5772 9.8702 25 1 2.2398 4.8832 8.4414 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 3.7997 0.5689 1.0415 32 1 2.4901 1.1366 2.1049 33 1 5.1173 3.8679 0.1303 34 1 3.9484 2.9624 -0.8606 35 1 5.5835 3.7290 -1.9120 36 1 7.1489 3.8037 -3.8102 37 1 8.8017 2.0057 -4.1161 38 1 8.8994 0.1344 -2.5203 39 1 7.3440 0.0575 -0.6141 40 1 5.2941 3.4266 2.3494 41 1 3.3288 4.1520 3.5200 42 1 2.8920 2.4415 3.7466 43 1 4.9829 2.0775 5.0289 44 1 5.4196 3.7881 4.8024 45 1 6.0101 3.1842 8.3873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883215957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:11 Heat of formation + Delta-G solvation = -10.802736 kcal Electronic energy + Delta-G solvation = -22249.591904 eV Core-core repulsion = 19039.112074 eV Total energy + Delta-G solvation = -3210.479829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21574 -38.13290 -36.54199 -35.08345 -33.18450 -31.54455 -31.07778 -29.86267 -28.97213 -27.32332 -24.54652 -23.61601 -22.65262 -22.26296 -20.50801 -19.90412 -19.77643 -18.29271 -16.46885 -16.17919 -16.07525 -15.88460 -15.20355 -14.91495 -14.80289 -14.41696 -14.26611 -13.78669 -13.53980 -13.43418 -13.20929 -12.73469 -12.57137 -12.14219 -12.02433 -11.87714 -11.68746 -11.36795 -11.14233 -11.04345 -10.97644 -10.92307 -10.69380 -10.50275 -10.35383 -9.92935 -9.41464 -9.29097 -9.12669 -9.10747 -8.33300 -8.24716 -7.80323 -5.97603 -4.00299 1.22107 1.36386 2.25754 3.18969 3.33143 3.39168 3.42051 3.69361 4.41334 4.58910 4.64253 4.74276 4.76636 4.88238 4.98088 5.05962 5.09412 5.20726 5.26068 5.38198 5.38882 5.39753 5.49169 5.59993 5.65199 5.66931 5.86095 5.89071 5.96380 6.21946 6.28376 6.28468 6.31019 6.41000 6.42259 6.55044 6.62394 6.68926 6.75943 7.01669 7.40381 7.51028 7.74648 7.83232 7.97535 8.11606 8.45518 9.07232 9.63307 11.13752 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012685 B = 0.003398 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.857270 B = 8238.427080 C = 9910.959482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.096 4.096 4 C -0.102 4.102 5 C 0.090 3.910 6 H 0.056 0.944 7 C 0.060 3.940 8 O -0.290 6.290 9 C 0.137 3.863 10 C -0.215 4.215 11 C -0.082 4.082 12 C -0.167 4.167 13 C -0.081 4.081 14 C -0.153 4.153 15 N -0.680 5.680 16 C 0.066 3.934 17 C 0.027 3.973 18 C -0.522 4.522 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.337 0.663 41 H 0.014 0.986 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.013 0.987 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 -2.775 -23.145 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.162 4.162 3 C -0.134 4.134 4 C -0.140 4.140 5 C -0.020 4.020 6 H 0.074 0.926 7 C -0.016 4.016 8 O -0.203 6.203 9 C 0.091 3.909 10 C -0.234 4.234 11 C -0.100 4.100 12 C -0.186 4.186 13 C -0.100 4.100 14 C -0.172 4.172 15 N -0.312 5.312 16 C -0.062 4.062 17 C -0.010 4.010 18 C -0.561 4.561 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.200 1.200 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.031 0.969 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.952 -3.593 -22.713 23.016 hybrid contribution -0.731 1.447 0.631 1.740 sum -1.683 -2.146 -22.083 22.251 Atomic orbital electron populations 1.23804 0.95986 1.01595 1.02615 1.22963 0.95921 0.98699 0.98582 1.20841 0.98146 0.95229 0.99141 1.21463 0.97777 0.97139 0.97632 1.21637 0.93659 0.97895 0.88796 0.92587 1.23084 0.90516 0.88983 0.98981 1.86244 1.44641 1.46121 1.43244 1.19147 0.90484 0.94152 0.87134 1.21278 1.03853 1.00178 0.98054 1.20918 0.94377 0.98065 0.96632 1.21015 1.00870 0.95799 1.00872 1.20963 0.97541 0.97947 0.93505 1.20504 0.96793 0.99486 1.00399 1.60514 1.11851 1.56719 1.02103 1.22225 0.96758 0.96611 0.90633 1.19035 0.94541 0.97935 0.89514 1.21180 0.96453 1.46425 0.92016 0.92831 1.24999 0.94928 0.95431 0.98986 1.69971 1.11232 1.48807 1.23151 0.86604 0.80125 0.78622 0.82690 1.20629 1.21232 1.19957 0.88781 0.88755 0.87432 0.91896 0.91402 0.90267 0.91235 0.92214 0.91733 0.85723 0.86131 0.86232 0.85574 0.85070 0.84485 0.96781 0.92228 0.95594 0.96864 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.07 14.32 29.02 0.42 -1.66 16 2 C -0.14 -1.58 9.52 -36.02 -0.34 -1.92 16 3 C -0.10 -1.07 5.29 -27.88 -0.15 -1.22 16 4 C -0.10 -1.40 4.79 -26.73 -0.13 -1.53 16 5 C 0.09 1.26 2.47 -67.71 -0.17 1.09 16 6 H 0.06 0.75 7.87 -51.92 -0.41 0.34 16 7 C 0.06 0.71 3.95 37.16 0.15 0.86 16 8 O -0.29 -4.00 9.10 -19.43 -0.18 -4.18 16 9 C 0.14 1.73 6.69 -39.22 -0.26 1.47 16 10 C -0.21 -2.35 9.04 -39.44 -0.36 -2.71 16 11 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 12 C -0.17 -1.56 10.04 -39.56 -0.40 -1.96 16 13 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 14 C -0.15 -1.81 9.99 -39.44 -0.39 -2.20 16 15 N -0.68 -12.08 6.23 -106.72 -0.66 -12.74 16 16 C 0.07 1.38 5.40 -3.83 -0.02 1.36 16 17 C 0.03 0.72 5.27 -27.89 -0.15 0.57 16 18 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -27.21 13.28 55.43 0.74 -26.47 16 22 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 H 0.09 0.91 7.84 -52.48 -0.41 0.49 16 27 H 0.09 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.06 0.66 7.79 -51.93 -0.40 0.26 16 30 H 0.07 0.71 6.98 -51.93 -0.36 0.35 16 31 H 0.08 1.18 7.38 -51.93 -0.38 0.80 16 32 H 0.07 1.08 7.21 -51.93 -0.37 0.70 16 33 H 0.06 0.67 7.56 -51.93 -0.39 0.28 16 34 H 0.06 0.64 6.47 -51.93 -0.34 0.30 16 35 H 0.12 1.18 6.30 -52.48 -0.33 0.85 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.34 5.85 8.35 -39.29 -0.33 5.52 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 1.26 7.19 -51.93 -0.37 0.88 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -31.23 370.66 -10.00 -41.23 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.45 Total: 3.65 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -3.01 Total: -23.90 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.07 Total: -39.21 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.18 Total: -4.18 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.23 -10.00 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883215957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.431 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds