Wall clock time and date at job start Tue Mar 31 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00071 * 2 1 4 4 C 1.53002 * 109.46847 * 125.00217 * 3 2 1 5 5 C 1.53009 * 109.47102 * 185.57982 * 4 3 2 6 6 H 1.09007 * 109.46586 * 54.40259 * 5 4 3 7 7 C 1.53000 * 109.47349 * 294.41014 * 5 4 3 8 8 O 1.42904 * 109.46775 * 304.99703 * 7 5 4 9 9 C 1.35900 * 116.99807 * 179.97438 * 8 7 5 10 10 C 1.38733 * 120.05728 * 359.73019 * 9 8 7 11 11 C 1.38138 * 119.94567 * 179.74024 * 10 9 8 12 12 C 1.38270 * 120.05207 * 0.50888 * 11 10 9 13 13 C 1.38264 * 120.11380 * 359.76430 * 12 11 10 14 14 C 1.38139 * 120.05192 * 359.97438 * 13 12 11 15 15 N 1.46898 * 109.47366 * 174.40182 * 5 4 3 16 16 C 1.46895 * 111.00492 * 276.11422 * 15 5 4 17 17 C 1.52999 * 109.47379 * 175.03576 * 16 15 5 18 18 C 1.50696 * 109.47185 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99917 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99640 * 179.97438 * 18 17 16 21 21 N 1.31503 * 120.00339 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99697 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47022 * 89.99975 * 22 20 18 24 24 H 1.48492 * 109.47295 * 209.99940 * 22 20 18 25 25 H 1.48503 * 109.47195 * 330.00304 * 22 20 18 26 26 H 1.08003 * 119.99911 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00009 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99911 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47515 * 5.00432 * 3 2 1 30 30 H 1.08998 * 109.47381 * 244.99776 * 3 2 1 31 31 H 1.08997 * 109.47455 * 65.58307 * 4 3 2 32 32 H 1.08995 * 109.47609 * 305.57883 * 4 3 2 33 33 H 1.09000 * 109.47069 * 184.99661 * 7 5 4 34 34 H 1.08998 * 109.46810 * 64.99268 * 7 5 4 35 35 H 1.08006 * 120.02386 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.97691 * 180.27105 * 11 10 9 37 37 H 1.08003 * 119.94181 * 179.74628 * 12 11 10 38 38 H 1.07994 * 119.97182 * 179.97438 * 13 12 11 39 39 H 1.08003 * 120.02836 * 179.97438 * 14 13 12 40 40 H 1.00901 * 110.99951 * 152.15116 * 15 5 4 41 41 H 1.09001 * 109.46628 * 295.03170 * 16 15 5 42 42 H 1.08998 * 109.47384 * 55.02862 * 16 15 5 43 43 H 1.09003 * 109.46758 * 299.99938 * 17 16 15 44 44 H 1.08998 * 109.47446 * 59.99324 * 17 16 15 45 45 H 0.97004 * 120.00652 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.6986 2.7093 1.2640 6 1 2.9300 3.4812 1.3042 7 6 4.5761 2.9272 0.0298 8 8 5.5090 1.8510 -0.0874 9 6 6.3685 1.8914 -1.1392 10 6 6.3115 2.9421 -2.0432 11 6 7.1899 2.9837 -3.1086 12 6 8.1185 1.9736 -3.2802 13 6 8.1736 0.9223 -2.3838 14 6 7.3009 0.8791 -1.3138 15 7 4.5286 2.7812 2.4739 16 6 3.7204 3.1427 3.6461 17 6 4.5912 3.0869 4.9029 18 6 3.7620 3.4571 6.1054 19 1 2.7183 3.7076 5.9853 20 6 4.3357 3.4760 7.3591 21 7 5.6064 3.1705 7.5054 22 14 3.3079 3.9357 8.8497 23 1 2.6916 2.7120 9.4224 24 1 4.1752 4.5772 9.8702 25 1 2.2398 4.8832 8.4414 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 3.7997 0.5689 1.0415 32 1 2.4901 1.1366 2.1049 33 1 5.1173 3.8679 0.1303 34 1 3.9484 2.9624 -0.8606 35 1 5.5835 3.7290 -1.9120 36 1 7.1489 3.8037 -3.8102 37 1 8.8017 2.0057 -4.1161 38 1 8.8994 0.1344 -2.5203 39 1 7.3440 0.0575 -0.6141 40 1 5.2941 3.4266 2.3494 41 1 3.3288 4.1520 3.5200 42 1 2.8920 2.4415 3.7466 43 1 4.9829 2.0775 5.0289 44 1 5.4196 3.7881 4.8024 45 1 6.0101 3.1842 8.3873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883215957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:11 Heat of formation + Delta-G solvation = -28.287210 kcal Electronic energy + Delta-G solvation = -22250.350087 eV Core-core repulsion = 19039.112074 eV Total energy + Delta-G solvation = -3211.238013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.10718 -39.13916 -37.61075 -36.32575 -35.05844 -33.03339 -31.88875 -30.68955 -30.51764 -28.57231 -26.10476 -25.00849 -23.49387 -23.12403 -22.38875 -20.96041 -20.65518 -19.16814 -18.50023 -17.32169 -17.05683 -16.81010 -16.49097 -16.18138 -16.05503 -15.76722 -15.26380 -14.89863 -14.70260 -14.56591 -14.28404 -14.16033 -13.78080 -13.40591 -13.28722 -13.14668 -12.89873 -12.80291 -12.50538 -12.42977 -12.26767 -12.03345 -11.89738 -11.81467 -11.57491 -11.43065 -11.34490 -11.18630 -10.56944 -10.17920 -9.90765 -9.25558 -9.08580 -8.20318 -6.32213 0.43935 0.55786 1.39581 1.41568 1.42475 1.52401 2.28822 2.40037 2.90234 3.12951 3.25616 3.69278 3.81205 3.97985 4.04528 4.15233 4.19262 4.27062 4.33332 4.37919 4.49495 4.52993 4.55327 4.60131 4.61704 4.64153 4.73171 4.81216 4.93248 5.07152 5.10563 5.13294 5.22807 5.40322 5.44898 5.47980 5.53164 5.64503 5.67304 5.76689 5.79500 5.91540 5.92901 6.13904 6.28682 6.52327 6.57683 6.85628 7.37142 8.91946 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012685 B = 0.003398 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.857270 B = 8238.427080 C = 9910.959482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C -0.086 4.086 4 C -0.095 4.095 5 C 0.090 3.910 6 H 0.071 0.929 7 C 0.064 3.936 8 O -0.315 6.315 9 C 0.112 3.888 10 C -0.222 4.222 11 C -0.085 4.085 12 C -0.168 4.168 13 C -0.085 4.085 14 C -0.177 4.177 15 N -0.691 5.691 16 C 0.086 3.914 17 C 0.034 3.966 18 C -0.544 4.544 19 H 0.061 0.939 20 C -0.001 4.001 21 N -0.932 5.932 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.261 1.261 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.123 0.877 40 H 0.338 0.662 41 H 0.023 0.977 42 H 0.057 0.943 43 H -0.011 1.011 44 H -0.011 1.011 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 -1.765 -24.768 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.182 4.182 3 C -0.123 4.123 4 C -0.133 4.133 5 C -0.019 4.019 6 H 0.089 0.911 7 C -0.011 4.011 8 O -0.228 6.228 9 C 0.066 3.934 10 C -0.240 4.240 11 C -0.103 4.103 12 C -0.186 4.186 13 C -0.102 4.102 14 C -0.196 4.196 15 N -0.323 5.323 16 C -0.042 4.042 17 C -0.004 4.004 18 C -0.583 4.583 19 H 0.080 0.920 20 C -0.199 4.199 21 N -0.572 5.572 22 Si 0.792 3.208 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.185 1.185 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.156 0.844 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.141 0.859 40 H 0.156 0.844 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.141 -2.586 -24.365 24.595 hybrid contribution -0.298 1.084 1.058 1.544 sum -2.439 -1.501 -23.307 23.482 Atomic orbital electron populations 1.23999 0.95729 1.02571 1.00953 1.23017 0.96428 0.98625 1.00096 1.20745 0.97695 0.95798 0.98080 1.21361 0.97592 0.96497 0.97874 1.21729 0.93913 0.98338 0.87946 0.91146 1.23070 0.90514 0.88864 0.98671 1.86199 1.45403 1.46937 1.44273 1.19390 0.91024 0.95357 0.87624 1.21492 1.04548 0.99930 0.98056 1.21306 0.93697 0.98815 0.96491 1.21407 1.00881 0.95102 1.01164 1.21271 0.97303 0.98848 0.92814 1.20684 0.97832 0.99644 1.01403 1.60391 1.12259 1.56771 1.02908 1.21800 0.95668 0.97036 0.89723 1.18885 0.94487 0.94881 0.92114 1.21621 0.97056 1.46473 0.93102 0.92043 1.26000 0.96176 0.95114 1.02565 1.70116 1.13216 1.49767 1.24150 0.85416 0.78509 0.78676 0.78241 1.19823 1.20687 1.18528 0.87982 0.87649 0.87674 0.90795 0.90495 0.92130 0.93482 0.91502 0.89155 0.84429 0.83504 0.83555 0.83439 0.85926 0.84364 0.95930 0.92427 0.99215 0.99235 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.68 14.32 67.78 0.97 -2.71 16 2 C -0.16 -3.47 9.52 25.65 0.24 -3.22 16 3 C -0.09 -1.81 5.29 29.85 0.16 -1.65 16 4 C -0.09 -2.63 4.79 30.60 0.15 -2.48 16 5 C 0.09 2.47 2.47 44.92 0.11 2.58 16 6 H 0.07 1.77 7.87 -2.38 -0.02 1.75 16 7 C 0.06 1.46 3.95 71.98 0.28 1.75 16 8 O -0.31 -8.81 9.10 -92.43 -0.84 -9.65 16 9 C 0.11 2.82 6.69 22.51 0.15 2.97 16 10 C -0.22 -4.53 9.04 22.36 0.20 -4.32 16 11 C -0.09 -1.44 10.04 22.25 0.22 -1.22 16 12 C -0.17 -2.73 10.04 22.28 0.22 -2.51 16 13 C -0.08 -1.57 10.04 22.25 0.22 -1.35 16 14 C -0.18 -4.24 9.99 22.36 0.22 -4.02 16 15 N -0.69 -25.12 6.23 -491.56 -3.06 -28.18 16 16 C 0.09 3.69 5.40 86.30 0.47 4.15 16 17 C 0.03 1.86 5.27 29.85 0.16 2.02 16 18 C -0.54 -31.65 9.11 25.60 0.23 -31.42 16 19 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 20 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 21 N -0.93 -58.19 13.28 21.45 0.28 -57.90 16 22 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 26 H 0.10 1.74 7.84 -2.91 -0.02 1.72 16 27 H 0.11 1.72 8.06 -2.91 -0.02 1.70 16 28 H 0.11 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.07 1.40 7.79 -2.39 -0.02 1.39 16 30 H 0.08 1.49 6.98 -2.39 -0.02 1.47 16 31 H 0.06 1.89 7.38 -2.39 -0.02 1.87 16 32 H 0.05 1.49 7.21 -2.39 -0.02 1.47 16 33 H 0.07 1.43 7.56 -2.39 -0.02 1.41 16 34 H 0.09 1.59 6.47 -2.39 -0.02 1.58 16 35 H 0.14 2.32 6.30 -2.91 -0.02 2.30 16 36 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.12 2.99 8.06 -2.91 -0.02 2.96 16 40 H 0.34 12.06 8.35 -89.69 -0.75 11.31 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 2.47 7.19 -2.39 -0.02 2.45 16 43 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 44 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 45 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -68.99 370.66 3.09 -65.90 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.20 Total: 23.93 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 4.48 Total: -41.00 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -2.78 Total: -86.08 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.84 Total: -9.65 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.99 3.09 -65.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883215957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.616 kcal (2) G-P(sol) polarization free energy of solvation -68.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds