Wall clock time and date at job start Tue Mar 31 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.53002 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47340 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47089 * 60.00033 * 4 3 2 7 7 C 1.34777 * 120.00115 * 59.99886 * 6 4 3 8 8 O 1.21288 * 119.99593 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00369 * 180.02562 * 7 6 4 10 10 H 1.09001 * 109.46613 * 300.00111 * 9 7 6 11 11 C 1.53006 * 109.47239 * 59.99719 * 9 7 6 12 12 C 1.50698 * 109.47576 * 180.02562 * 9 7 6 13 13 H 1.08004 * 119.99528 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00356 * 180.02562 * 12 9 7 15 15 N 1.31512 * 120.00020 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 119.99603 * 359.97438 * 14 12 9 17 17 H 1.48495 * 109.47195 * 90.00782 * 16 14 12 18 18 H 1.48502 * 109.46875 * 210.00223 * 16 14 12 19 19 H 1.48493 * 109.47388 * 330.00132 * 16 14 12 20 20 C 1.50695 * 109.47399 * 300.00219 * 4 3 2 21 21 C 1.38238 * 119.99579 * 329.72520 * 20 4 3 22 22 C 1.38244 * 119.99808 * 179.76461 * 21 20 4 23 23 C 1.38240 * 119.99683 * 0.50863 * 22 21 20 24 24 C 1.38234 * 119.99875 * 359.74791 * 23 22 21 25 25 C 1.38227 * 120.00556 * 359.97438 * 24 23 22 26 26 H 1.08993 * 109.47662 * 300.00035 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00258 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 239.99513 * 2 1 3 30 30 H 1.09004 * 109.46733 * 120.00196 * 2 1 3 31 31 H 1.09000 * 109.47380 * 60.00304 * 3 2 1 32 32 H 1.08996 * 109.47134 * 299.99215 * 3 2 1 33 33 H 1.08992 * 109.47346 * 300.00686 * 5 4 3 34 34 H 1.09004 * 109.46785 * 60.00308 * 5 4 3 35 35 H 1.09001 * 109.47364 * 179.97438 * 5 4 3 36 36 H 0.96995 * 120.00194 * 240.00302 * 6 4 3 37 37 H 1.09001 * 109.47002 * 60.00070 * 11 9 7 38 38 H 1.08993 * 109.46955 * 180.02562 * 11 9 7 39 39 H 1.09000 * 109.47050 * 300.00336 * 11 9 7 40 40 H 0.97000 * 119.99684 * 179.97438 * 15 14 12 41 41 H 1.07998 * 120.00443 * 359.97438 * 21 20 4 42 42 H 1.07997 * 119.99955 * 180.23043 * 22 21 20 43 43 H 1.08001 * 119.99654 * 179.71863 * 23 22 21 44 44 H 1.08004 * 119.99345 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00206 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 7 4.0588 0.7517 -1.1953 7 6 3.7338 1.2119 -2.4196 8 8 3.0369 2.1983 -2.5312 9 6 4.2361 0.5011 -3.6497 10 1 5.3261 0.5007 -3.6494 11 6 3.7256 -0.9413 -3.6495 12 6 3.7349 1.2117 -4.8805 13 1 3.1142 2.0900 -4.7818 14 6 4.0677 0.7400 -6.1326 15 7 3.6299 1.3599 -7.2066 16 14 5.1406 -0.7797 -6.3032 17 1 4.2812 -1.9898 -6.3485 18 1 5.9328 -0.6881 -7.5560 19 1 6.0608 -0.8691 -5.1412 20 6 4.0719 0.7322 1.2313 21 6 3.3270 0.7570 2.3956 22 6 3.7850 0.1013 3.5232 23 6 4.9929 -0.5701 3.4895 24 6 5.7402 -0.5903 2.3268 25 6 5.2796 0.0604 1.1976 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9562 -0.8900 33 1 3.7170 3.3983 -0.8903 34 1 3.7163 3.3992 0.8896 35 1 5.1700 2.8849 0.0009 36 1 4.6164 -0.0370 -1.1060 37 1 2.6355 -0.9409 -3.6498 38 1 4.0893 -1.4555 -4.5390 39 1 4.0885 -1.4550 -2.7593 40 1 3.8644 1.0282 -8.0875 41 1 2.3856 1.2856 2.4233 42 1 3.2013 0.1175 4.4317 43 1 5.3529 -1.0785 4.3718 44 1 6.6841 -1.1145 2.3007 45 1 5.8637 0.0450 0.2893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889479152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:48 Heat of formation + Delta-G solvation = -18.555131 kcal Electronic energy + Delta-G solvation = -24110.532453 eV Core-core repulsion = 20899.716454 eV Total energy + Delta-G solvation = -3210.815998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48697 -38.64649 -36.14242 -33.79810 -33.39353 -31.76030 -31.03983 -30.58517 -29.25465 -26.56315 -25.11357 -23.91572 -22.74006 -22.33273 -21.36691 -19.96576 -18.88749 -17.51155 -16.69047 -15.99898 -15.44934 -15.07147 -14.95953 -14.68826 -14.22522 -14.18336 -13.74488 -13.46235 -13.39546 -13.16163 -12.76278 -12.55364 -12.44715 -12.28958 -12.06673 -11.94997 -11.62843 -11.50676 -11.33218 -11.11172 -10.95388 -10.64300 -10.53134 -10.49548 -10.37792 -10.22796 -9.61447 -9.07727 -9.02028 -8.87838 -8.58416 -8.47231 -8.40492 -6.03271 -4.02975 1.24286 1.29245 3.24347 3.31787 3.37339 3.59102 3.66564 3.83701 4.39406 4.55519 4.76151 4.87288 4.97295 5.03594 5.20459 5.26426 5.28220 5.38421 5.46080 5.54813 5.66859 5.73884 5.81754 5.87231 5.91944 5.98231 6.04969 6.07057 6.13341 6.15892 6.28825 6.33011 6.36491 6.39859 6.44589 6.48468 6.52289 6.58495 6.66825 6.75438 6.88694 7.11052 7.18602 7.57949 8.18512 8.58071 9.13758 9.19557 9.56378 11.09731 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.004843 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.413993 B = 5780.282462 C = 6253.189072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.130 4.130 4 C 0.218 3.782 5 C -0.158 4.158 6 N -0.739 5.739 7 C 0.533 3.467 8 O -0.525 6.525 9 C -0.006 4.006 10 H 0.050 0.950 11 C -0.144 4.144 12 C -0.502 4.502 13 H 0.094 0.906 14 C 0.070 3.930 15 N -0.897 5.897 16 Si 0.883 3.117 17 H -0.279 1.279 18 H -0.296 1.296 19 H -0.268 1.268 20 C -0.071 4.071 21 C -0.109 4.109 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.117 4.117 25 C -0.118 4.118 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.393 0.607 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.031 0.969 40 H 0.264 0.736 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 -5.182 21.563 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.168 4.168 4 C 0.131 3.869 5 C -0.216 4.216 6 N -0.394 5.394 7 C 0.321 3.679 8 O -0.399 6.399 9 C -0.027 4.027 10 H 0.067 0.933 11 C -0.201 4.201 12 C -0.540 4.540 13 H 0.112 0.888 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.714 3.286 17 H -0.206 1.206 18 H -0.224 1.224 19 H -0.193 1.193 20 C -0.071 4.071 21 C -0.127 4.127 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.135 4.135 25 C -0.136 4.136 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.228 0.772 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.923 -4.432 21.247 21.724 hybrid contribution 0.938 -1.380 -0.139 1.675 sum 1.861 -5.812 21.108 21.972 Atomic orbital electron populations 1.21741 0.96223 1.01121 1.01589 1.21520 0.95435 0.96922 1.02072 1.22072 0.93513 0.97621 1.03581 1.19046 0.93835 0.91768 0.82230 1.22202 1.00945 0.94939 1.03485 1.46474 1.55464 1.32311 1.05164 1.21142 0.78874 0.84154 0.83683 1.90512 1.36889 1.26188 1.86341 1.19316 0.97656 0.92940 0.92830 0.93269 1.22113 1.01831 0.97091 0.99109 1.20932 1.32327 1.13600 0.87162 0.88821 1.24976 0.95608 0.96741 0.95819 1.69882 1.45415 1.40348 0.97838 0.86932 0.80904 0.83782 0.77002 1.20597 1.22386 1.19334 1.19961 0.94667 0.97444 0.95038 1.21079 0.99762 0.99564 0.92320 1.21123 0.96430 0.98069 0.98182 1.21125 0.95304 1.00040 0.98039 1.21114 0.99812 0.99484 0.93071 1.21030 0.95921 0.97962 0.98721 0.93282 0.92532 0.93201 0.91680 0.92361 0.91853 0.88774 0.89411 0.92478 0.92770 0.77216 0.92382 0.93388 0.94970 0.92629 0.85610 0.86204 0.86377 0.86141 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.65 5.45 -26.73 -0.15 -1.79 16 3 C -0.13 -1.85 3.55 -26.73 -0.10 -1.95 16 4 C 0.22 3.08 0.59 -132.97 -0.08 3.00 16 5 C -0.16 -2.32 8.38 37.16 0.31 -2.01 16 6 N -0.74 -11.84 3.98 -48.68 -0.19 -12.04 16 7 C 0.53 11.15 6.57 -10.99 -0.07 11.08 16 8 O -0.52 -12.62 11.67 5.55 0.06 -12.56 16 9 C -0.01 -0.13 2.23 -92.92 -0.21 -0.34 16 10 H 0.05 1.11 7.20 -51.93 -0.37 0.74 16 11 C -0.14 -2.95 8.57 37.16 0.32 -2.63 16 12 C -0.50 -14.34 8.96 -34.44 -0.31 -14.65 16 13 H 0.09 3.04 7.00 -52.48 -0.37 2.68 16 14 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 15 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 16 Si 0.88 21.37 24.37 -169.99 -4.14 17.23 16 17 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.27 -6.04 6.53 56.52 0.37 -5.67 16 20 C -0.07 -0.85 4.06 -104.62 -0.43 -1.27 16 21 C -0.11 -1.17 7.79 -39.58 -0.31 -1.48 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 23 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 25 C -0.12 -1.33 8.96 -39.58 -0.35 -1.69 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 1.01 7.60 -51.93 -0.39 0.61 16 30 H 0.06 0.72 6.19 -51.93 -0.32 0.40 16 31 H 0.06 0.78 6.51 -51.93 -0.34 0.44 16 32 H 0.09 1.67 6.17 -51.93 -0.32 1.35 16 33 H 0.09 1.56 6.16 -51.93 -0.32 1.24 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.39 5.53 6.08 -40.82 -0.25 5.29 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 39 H 0.03 0.53 7.56 -51.93 -0.39 0.13 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.13 1.24 6.17 -52.49 -0.32 0.91 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.12 1.34 6.71 -52.49 -0.35 0.99 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -31.87 343.07 -7.52 -39.39 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.91 Total: 7.63 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -2.29 Total: -17.92 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.58 Total: -38.94 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.06 Total: -12.56 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.14 Total: 17.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.87 -7.52 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889479152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.840 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds