Wall clock time and date at job start Tue Mar 31 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.53002 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47340 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47089 * 60.00033 * 4 3 2 7 7 C 1.34777 * 120.00115 * 59.99886 * 6 4 3 8 8 O 1.21288 * 119.99593 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00369 * 180.02562 * 7 6 4 10 10 H 1.09001 * 109.46613 * 300.00111 * 9 7 6 11 11 C 1.53006 * 109.47239 * 59.99719 * 9 7 6 12 12 C 1.50698 * 109.47576 * 180.02562 * 9 7 6 13 13 H 1.08004 * 119.99528 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00356 * 180.02562 * 12 9 7 15 15 N 1.31512 * 120.00020 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 119.99603 * 359.97438 * 14 12 9 17 17 H 1.48495 * 109.47195 * 90.00782 * 16 14 12 18 18 H 1.48502 * 109.46875 * 210.00223 * 16 14 12 19 19 H 1.48493 * 109.47388 * 330.00132 * 16 14 12 20 20 C 1.50695 * 109.47399 * 300.00219 * 4 3 2 21 21 C 1.38238 * 119.99579 * 329.72520 * 20 4 3 22 22 C 1.38244 * 119.99808 * 179.76461 * 21 20 4 23 23 C 1.38240 * 119.99683 * 0.50863 * 22 21 20 24 24 C 1.38234 * 119.99875 * 359.74791 * 23 22 21 25 25 C 1.38227 * 120.00556 * 359.97438 * 24 23 22 26 26 H 1.08993 * 109.47662 * 300.00035 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00258 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 239.99513 * 2 1 3 30 30 H 1.09004 * 109.46733 * 120.00196 * 2 1 3 31 31 H 1.09000 * 109.47380 * 60.00304 * 3 2 1 32 32 H 1.08996 * 109.47134 * 299.99215 * 3 2 1 33 33 H 1.08992 * 109.47346 * 300.00686 * 5 4 3 34 34 H 1.09004 * 109.46785 * 60.00308 * 5 4 3 35 35 H 1.09001 * 109.47364 * 179.97438 * 5 4 3 36 36 H 0.96995 * 120.00194 * 240.00302 * 6 4 3 37 37 H 1.09001 * 109.47002 * 60.00070 * 11 9 7 38 38 H 1.08993 * 109.46955 * 180.02562 * 11 9 7 39 39 H 1.09000 * 109.47050 * 300.00336 * 11 9 7 40 40 H 0.97000 * 119.99684 * 179.97438 * 15 14 12 41 41 H 1.07998 * 120.00443 * 359.97438 * 21 20 4 42 42 H 1.07997 * 119.99955 * 180.23043 * 22 21 20 43 43 H 1.08001 * 119.99654 * 179.71863 * 23 22 21 44 44 H 1.08004 * 119.99345 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00206 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 7 4.0588 0.7517 -1.1953 7 6 3.7338 1.2119 -2.4196 8 8 3.0369 2.1983 -2.5312 9 6 4.2361 0.5011 -3.6497 10 1 5.3261 0.5007 -3.6494 11 6 3.7256 -0.9413 -3.6495 12 6 3.7349 1.2117 -4.8805 13 1 3.1142 2.0900 -4.7818 14 6 4.0677 0.7400 -6.1326 15 7 3.6299 1.3599 -7.2066 16 14 5.1406 -0.7797 -6.3032 17 1 4.2812 -1.9898 -6.3485 18 1 5.9328 -0.6881 -7.5560 19 1 6.0608 -0.8691 -5.1412 20 6 4.0719 0.7322 1.2313 21 6 3.3270 0.7570 2.3956 22 6 3.7850 0.1013 3.5232 23 6 4.9929 -0.5701 3.4895 24 6 5.7402 -0.5903 2.3268 25 6 5.2796 0.0604 1.1976 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9562 -0.8900 33 1 3.7170 3.3983 -0.8903 34 1 3.7163 3.3992 0.8896 35 1 5.1700 2.8849 0.0009 36 1 4.6164 -0.0370 -1.1060 37 1 2.6355 -0.9409 -3.6498 38 1 4.0893 -1.4555 -4.5390 39 1 4.0885 -1.4550 -2.7593 40 1 3.8644 1.0282 -8.0875 41 1 2.3856 1.2856 2.4233 42 1 3.2013 0.1175 4.4317 43 1 5.3529 -1.0785 4.3718 44 1 6.6841 -1.1145 2.3007 45 1 5.8637 0.0450 0.2893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889479152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:48 Heat of formation + Delta-G solvation = -38.243924 kcal Electronic energy + Delta-G solvation = -24111.386223 eV Core-core repulsion = 20899.716454 eV Total energy + Delta-G solvation = -3211.669769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67523 -39.87761 -37.36245 -35.73992 -34.63188 -33.51253 -32.22112 -31.59543 -30.29643 -27.67206 -27.10870 -25.33355 -23.91824 -23.26927 -22.44016 -21.27436 -20.27831 -18.75753 -18.67432 -17.24430 -16.85629 -16.44133 -16.16214 -15.91615 -15.47015 -15.32186 -14.99655 -14.96566 -14.61056 -14.32702 -14.21578 -14.02410 -13.58714 -13.51607 -13.37298 -13.16103 -12.94848 -12.84392 -12.63536 -12.52420 -12.29658 -12.12842 -11.89634 -11.68190 -11.55090 -11.48184 -11.43647 -11.20390 -10.75750 -10.18465 -9.98978 -9.74816 -9.52165 -8.25863 -6.32642 0.46245 0.55431 1.32528 1.38663 1.49733 1.95823 2.34093 2.38645 2.94551 3.08041 3.55006 3.79551 4.05871 4.08790 4.18367 4.20387 4.25700 4.34967 4.42735 4.48923 4.56288 4.60759 4.64683 4.68413 4.74465 4.76593 4.81240 4.93313 4.97608 5.02869 5.05407 5.10043 5.20418 5.25566 5.31178 5.37588 5.43544 5.48281 5.54359 5.61711 5.64646 5.68967 5.85287 6.15215 6.29267 6.72270 6.90589 7.28986 7.59826 8.91796 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.004843 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.413993 B = 5780.282462 C = 6253.189072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.127 4.127 4 C 0.218 3.782 5 C -0.155 4.155 6 N -0.717 5.717 7 C 0.533 3.467 8 O -0.567 6.567 9 C -0.011 4.011 10 H 0.064 0.936 11 C -0.138 4.138 12 C -0.514 4.514 13 H 0.032 0.968 14 C 0.006 3.994 15 N -0.953 5.953 16 Si 0.957 3.043 17 H -0.262 1.262 18 H -0.300 1.300 19 H -0.232 1.232 20 C -0.083 4.083 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.119 4.119 25 C -0.131 4.131 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.406 0.594 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.266 0.734 41 H 0.132 0.868 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 -8.335 25.257 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.165 4.165 4 C 0.132 3.868 5 C -0.213 4.213 6 N -0.371 5.371 7 C 0.321 3.679 8 O -0.445 6.445 9 C -0.032 4.032 10 H 0.082 0.918 11 C -0.195 4.195 12 C -0.552 4.552 13 H 0.050 0.950 14 C -0.190 4.190 15 N -0.593 5.593 16 Si 0.782 3.218 17 H -0.188 1.188 18 H -0.228 1.228 19 H -0.156 1.156 20 C -0.083 4.083 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.149 4.149 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.243 0.757 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.150 0.850 42 H 0.162 0.838 43 H 0.162 0.838 44 H 0.158 0.842 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.628 -7.610 25.004 26.269 hybrid contribution 0.364 -0.285 -1.186 1.273 sum 2.993 -7.895 23.818 25.270 Atomic orbital electron populations 1.21735 0.95478 1.01880 1.01445 1.21462 0.96106 0.95961 1.01749 1.22001 0.93737 0.98169 1.02557 1.19106 0.93737 0.91494 0.82426 1.22143 1.01014 0.95513 1.02600 1.46189 1.54397 1.32238 1.04313 1.20820 0.78673 0.83598 0.84807 1.90522 1.38870 1.27990 1.87074 1.19266 0.98203 0.94307 0.91441 0.91837 1.21996 1.01136 0.95149 1.01204 1.21075 1.31586 1.12393 0.90181 0.95006 1.25994 0.97266 1.00802 0.94924 1.70077 1.47659 1.42946 0.98665 0.85744 0.79235 0.78890 0.77920 1.18830 1.22806 1.15565 1.19695 0.95693 0.98764 0.94195 1.21197 0.99962 0.99925 0.92287 1.21430 0.96719 0.97123 0.98479 1.21499 0.94883 0.99238 0.98644 1.21377 1.00633 0.99034 0.92681 1.21120 0.95726 0.98509 0.99543 0.91325 0.94806 0.91972 0.93977 0.90428 0.89586 0.93024 0.93233 0.90343 0.92509 0.75665 0.93640 0.93737 0.90140 0.92510 0.85035 0.83819 0.83848 0.84191 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.91 71.98 0.71 -2.80 16 2 C -0.12 -2.98 5.45 30.59 0.17 -2.81 16 3 C -0.13 -3.61 3.55 30.59 0.11 -3.50 16 4 C 0.22 6.03 0.59 2.85 0.00 6.04 16 5 C -0.15 -4.61 8.38 71.98 0.60 -4.00 16 6 N -0.72 -22.55 3.98 -426.32 -1.70 -24.25 16 7 C 0.53 22.96 6.57 87.66 0.58 23.53 16 8 O -0.57 -29.30 11.67 -3.05 -0.04 -29.34 16 9 C -0.01 -0.48 2.23 -12.29 -0.03 -0.51 16 10 H 0.06 2.76 7.20 -2.39 -0.02 2.74 16 11 C -0.14 -5.36 8.57 71.98 0.62 -4.74 16 12 C -0.51 -30.85 8.96 25.60 0.23 -30.62 16 13 H 0.03 2.25 7.00 -2.91 -0.02 2.23 16 14 C 0.01 0.38 5.45 84.65 0.46 0.84 16 15 N -0.95 -61.74 13.96 21.45 0.30 -61.44 16 16 Si 0.96 43.71 24.37 68.60 1.67 45.39 16 17 H -0.26 -11.27 6.87 99.48 0.68 -10.58 16 18 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 19 H -0.23 -9.23 6.53 99.48 0.65 -8.58 16 20 C -0.08 -1.79 4.06 -19.87 -0.08 -1.87 16 21 C -0.12 -2.09 7.79 22.27 0.17 -1.92 16 22 C -0.12 -1.74 10.05 22.27 0.22 -1.51 16 23 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 24 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 25 C -0.13 -2.56 8.96 22.27 0.20 -2.36 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 1.27 7.60 -2.39 -0.02 1.25 16 30 H 0.08 1.71 6.19 -2.39 -0.01 1.70 16 31 H 0.09 2.01 6.51 -2.39 -0.02 2.00 16 32 H 0.05 1.94 6.17 -2.39 -0.01 1.93 16 33 H 0.05 1.87 6.16 -2.39 -0.01 1.85 16 34 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.41 10.54 6.08 -92.71 -0.56 9.98 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.04 1.77 3.27 -2.39 -0.01 1.76 16 39 H 0.08 2.34 7.56 -2.39 -0.02 2.32 16 40 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 41 H 0.13 2.16 6.17 -2.91 -0.02 2.14 16 42 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 44 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.12 2.33 6.71 -2.91 -0.02 2.31 16 Total: -1.00 -75.84 343.07 4.99 -70.85 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.34 Total: 28.18 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 4.41 Total: -29.38 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -1.40 Total: -85.69 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.04 Total: -29.34 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.67 Total: 45.39 kcal Total: -75.84 4.99 -70.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889479152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.604 kcal (2) G-P(sol) polarization free energy of solvation -75.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds