Wall clock time and date at job start Tue Mar 31 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46791 * 2 1 4 4 C 1.52995 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47200 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47022 * 59.99985 * 4 3 2 7 7 C 1.34774 * 120.00288 * 60.00209 * 6 4 3 8 8 O 1.21280 * 119.99761 * 359.97438 * 7 6 4 9 9 C 1.50698 * 120.00338 * 179.97438 * 7 6 4 10 10 H 1.09007 * 109.46871 * 59.99694 * 9 7 6 11 11 C 1.53000 * 109.47177 * 300.00305 * 9 7 6 12 12 C 1.50694 * 109.47166 * 179.97438 * 9 7 6 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 9 7 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 7 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.50699 * 109.46908 * 299.99780 * 4 3 2 21 21 C 1.38237 * 120.00502 * 329.72862 * 20 4 3 22 22 C 1.38237 * 120.00197 * 179.76468 * 21 20 4 23 23 C 1.38238 * 119.99728 * 0.50569 * 22 21 20 24 24 C 1.38234 * 120.00072 * 359.74820 * 23 22 21 25 25 C 1.38238 * 119.99561 * 149.99899 * 20 4 3 26 26 H 1.08995 * 109.47489 * 299.99990 * 1 2 3 27 27 H 1.08998 * 109.47317 * 60.00517 * 1 2 3 28 28 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47489 * 240.00010 * 2 1 3 30 30 H 1.08998 * 109.46862 * 119.99762 * 2 1 3 31 31 H 1.09007 * 109.47312 * 59.99376 * 3 2 1 32 32 H 1.09007 * 109.46901 * 300.00053 * 3 2 1 33 33 H 1.08998 * 109.47223 * 299.99728 * 5 4 3 34 34 H 1.09005 * 109.47048 * 60.00037 * 5 4 3 35 35 H 1.08998 * 109.47339 * 179.97438 * 5 4 3 36 36 H 0.97006 * 119.99461 * 239.99949 * 6 4 3 37 37 H 1.08998 * 109.47089 * 59.99668 * 11 9 7 38 38 H 1.08995 * 109.47131 * 179.97438 * 11 9 7 39 39 H 1.09002 * 109.47106 * 299.99721 * 11 9 7 40 40 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 41 41 H 1.08001 * 119.99285 * 359.97438 * 21 20 4 42 42 H 1.07993 * 120.00053 * 180.22563 * 22 21 20 43 43 H 1.07997 * 119.99668 * 179.72470 * 23 22 21 44 44 H 1.07994 * 119.99585 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00682 * 0.02562 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8852 0.0000 6 7 4.0587 0.7519 -1.1952 7 6 3.7337 1.2121 -2.4195 8 8 3.0361 2.1979 -2.5312 9 6 4.2370 0.5019 -3.6496 10 1 3.8741 -0.5260 -3.6498 11 6 5.7670 0.5025 -3.6487 12 6 3.7346 1.2117 -4.8804 13 1 3.1133 2.0895 -4.7818 14 6 4.0681 0.7403 -6.1325 15 7 4.8251 -0.3284 -6.2526 16 14 3.4447 1.6197 -7.6581 17 1 3.9408 0.9199 -8.8703 18 1 1.9597 1.6184 -7.6581 19 1 3.9385 3.0202 -7.6587 20 6 4.0717 0.7325 1.2315 21 6 3.3268 0.7571 2.3957 22 6 3.7849 0.1016 3.5233 23 6 4.9928 -0.5698 3.4896 24 6 5.7402 -0.5900 2.3269 25 6 5.2796 0.0611 1.1978 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6765 1.9563 -0.8900 33 1 3.7169 3.3984 -0.8904 34 1 3.7160 3.3995 0.8896 35 1 5.1698 2.8853 0.0009 36 1 4.6165 -0.0368 -1.1058 37 1 6.1300 -0.0111 -2.7585 38 1 6.1311 -0.0116 -4.5382 39 1 6.1300 1.5303 -3.6486 40 1 5.0594 -0.6602 -7.1335 41 1 2.3854 1.2857 2.4233 42 1 3.2012 0.1177 4.4318 43 1 5.3528 -1.0782 4.3719 44 1 6.6840 -1.1141 2.3008 45 1 5.8639 0.0459 0.2897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889479153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:51 Heat of formation + Delta-G solvation = -28.349826 kcal Electronic energy + Delta-G solvation = -23991.074681 eV Core-core repulsion = 20779.833953 eV Total energy + Delta-G solvation = -3211.240728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38588 -38.51195 -36.04233 -33.68660 -33.32236 -31.56194 -30.85908 -30.12612 -29.05876 -26.51117 -25.10855 -23.71514 -22.62630 -22.20041 -21.31176 -19.93756 -18.74692 -17.51260 -16.19338 -15.86240 -15.39639 -15.00470 -14.77416 -14.46752 -14.23193 -14.12145 -13.69982 -13.40544 -13.20104 -12.97615 -12.62010 -12.45129 -12.34566 -11.95273 -11.90045 -11.67436 -11.36803 -11.27449 -11.05693 -10.96474 -10.73112 -10.66843 -10.52011 -10.45130 -10.32563 -10.15344 -9.92017 -8.95749 -8.94764 -8.80224 -8.47957 -8.29615 -8.20850 -6.00107 -4.02875 1.31023 1.35895 3.37817 3.40287 3.45601 3.70482 3.80038 3.97266 4.49788 4.63074 4.83190 4.93544 5.03717 5.09653 5.26388 5.32444 5.33829 5.44785 5.52650 5.62630 5.72166 5.81936 5.87874 5.96193 5.99567 6.08977 6.09653 6.20664 6.30717 6.33664 6.42156 6.46118 6.54382 6.58526 6.61462 6.65005 6.72376 6.85508 6.94940 6.97513 7.23608 7.51469 7.78715 8.03124 8.20276 8.51266 9.05816 9.32379 9.62603 11.07480 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.004499 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.141823 B = 6222.443257 C = 6809.449062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.129 4.129 4 C 0.216 3.784 5 C -0.156 4.156 6 N -0.737 5.737 7 C 0.525 3.475 8 O -0.541 6.541 9 C 0.029 3.971 10 H 0.050 0.950 11 C -0.132 4.132 12 C -0.498 4.498 13 H 0.074 0.926 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.899 3.101 17 H -0.289 1.289 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.071 4.071 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.117 4.117 25 C -0.117 4.117 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.394 0.606 37 H 0.010 0.990 38 H 0.092 0.908 39 H 0.030 0.970 40 H 0.260 0.740 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 -1.341 18.679 18.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.167 4.167 4 C 0.130 3.870 5 C -0.214 4.214 6 N -0.392 5.392 7 C 0.315 3.685 8 O -0.417 6.417 9 C 0.008 3.992 10 H 0.068 0.932 11 C -0.190 4.190 12 C -0.537 4.537 13 H 0.092 0.908 14 C -0.143 4.143 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.214 1.214 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.071 4.071 21 C -0.128 4.128 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.135 4.135 25 C -0.135 4.135 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.229 0.771 37 H 0.029 0.971 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.996 -0.726 18.424 18.465 hybrid contribution 0.095 -0.078 -0.700 0.710 sum -0.901 -0.804 17.724 17.765 Atomic orbital electron populations 1.21739 0.96299 1.01102 1.01476 1.21515 0.95344 0.96961 1.02124 1.22064 0.93680 0.97554 1.03399 1.19032 0.93716 0.91756 0.82497 1.22190 1.00925 0.95068 1.03265 1.46513 1.55338 1.32310 1.05088 1.21835 0.78295 0.84194 0.84216 1.90455 1.37803 1.26787 1.86623 1.18857 0.94003 0.96788 0.89551 0.93247 1.21735 0.96725 0.99725 1.00776 1.21096 1.30830 1.12758 0.88973 0.90828 1.24947 0.95169 0.95075 0.99072 1.69865 1.37131 1.23136 1.23553 0.86530 0.79258 0.79708 0.81759 1.21449 1.20244 1.20254 1.19978 0.94655 0.97423 0.95041 1.21069 0.99754 0.99646 0.92358 1.21107 0.96453 0.98175 0.98154 1.21118 0.95322 1.00088 0.98038 1.21123 0.99831 0.99455 0.93059 1.21059 0.95909 0.97784 0.98751 0.93330 0.92623 0.93190 0.91669 0.92340 0.92003 0.88880 0.89528 0.92653 0.92818 0.77103 0.97116 0.88934 0.95035 0.92988 0.85689 0.86267 0.86409 0.86115 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.73 5.45 -26.73 -0.15 -1.87 16 3 C -0.13 -1.92 3.55 -26.73 -0.09 -2.01 16 4 C 0.22 3.24 0.59 -132.98 -0.08 3.16 16 5 C -0.16 -2.41 8.38 37.16 0.31 -2.10 16 6 N -0.74 -12.64 3.98 -48.69 -0.19 -12.83 16 7 C 0.52 11.48 6.57 -10.99 -0.07 11.41 16 8 O -0.54 -13.17 11.67 5.56 0.06 -13.10 16 9 C 0.03 0.71 2.64 -92.93 -0.24 0.47 16 10 H 0.05 1.27 8.14 -51.92 -0.42 0.85 16 11 C -0.13 -3.00 8.87 37.16 0.33 -2.67 16 12 C -0.50 -13.99 8.37 -34.44 -0.29 -14.27 16 13 H 0.07 2.17 6.75 -52.49 -0.35 1.82 16 14 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 15 N -0.90 -25.18 11.32 55.43 0.63 -24.55 16 16 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.07 -0.90 4.06 -104.62 -0.42 -1.33 16 21 C -0.11 -1.25 7.79 -39.58 -0.31 -1.56 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 24 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.43 8.96 -39.58 -0.35 -1.78 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.07 7.60 -51.93 -0.39 0.68 16 30 H 0.06 0.77 6.19 -51.93 -0.32 0.45 16 31 H 0.06 0.79 6.51 -51.93 -0.34 0.45 16 32 H 0.09 1.70 6.17 -51.93 -0.32 1.37 16 33 H 0.09 1.58 6.17 -51.93 -0.32 1.26 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.39 6.16 6.09 -40.82 -0.25 5.91 16 37 H 0.01 0.19 7.56 -51.93 -0.39 -0.20 16 38 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.13 1.30 6.17 -52.49 -0.32 0.98 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.12 1.50 6.71 -52.49 -0.35 1.15 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -29.75 349.89 -8.59 -38.33 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.04 Total: 7.51 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.29 Total: -17.47 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.43 Total: -37.38 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.06 Total: -13.10 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.75 -8.59 -38.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889479153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.983 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds