Wall clock time and date at job start Tue Mar 31 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46791 * 2 1 4 4 C 1.52995 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47200 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47022 * 59.99985 * 4 3 2 7 7 C 1.34774 * 120.00288 * 60.00209 * 6 4 3 8 8 O 1.21280 * 119.99761 * 359.97438 * 7 6 4 9 9 C 1.50698 * 120.00338 * 179.97438 * 7 6 4 10 10 H 1.09007 * 109.46871 * 59.99694 * 9 7 6 11 11 C 1.53000 * 109.47177 * 300.00305 * 9 7 6 12 12 C 1.50694 * 109.47166 * 179.97438 * 9 7 6 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 9 7 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 7 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.50699 * 109.46908 * 299.99780 * 4 3 2 21 21 C 1.38237 * 120.00502 * 329.72862 * 20 4 3 22 22 C 1.38237 * 120.00197 * 179.76468 * 21 20 4 23 23 C 1.38238 * 119.99728 * 0.50569 * 22 21 20 24 24 C 1.38234 * 120.00072 * 359.74820 * 23 22 21 25 25 C 1.38238 * 119.99561 * 149.99899 * 20 4 3 26 26 H 1.08995 * 109.47489 * 299.99990 * 1 2 3 27 27 H 1.08998 * 109.47317 * 60.00517 * 1 2 3 28 28 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47489 * 240.00010 * 2 1 3 30 30 H 1.08998 * 109.46862 * 119.99762 * 2 1 3 31 31 H 1.09007 * 109.47312 * 59.99376 * 3 2 1 32 32 H 1.09007 * 109.46901 * 300.00053 * 3 2 1 33 33 H 1.08998 * 109.47223 * 299.99728 * 5 4 3 34 34 H 1.09005 * 109.47048 * 60.00037 * 5 4 3 35 35 H 1.08998 * 109.47339 * 179.97438 * 5 4 3 36 36 H 0.97006 * 119.99461 * 239.99949 * 6 4 3 37 37 H 1.08998 * 109.47089 * 59.99668 * 11 9 7 38 38 H 1.08995 * 109.47131 * 179.97438 * 11 9 7 39 39 H 1.09002 * 109.47106 * 299.99721 * 11 9 7 40 40 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 41 41 H 1.08001 * 119.99285 * 359.97438 * 21 20 4 42 42 H 1.07993 * 120.00053 * 180.22563 * 22 21 20 43 43 H 1.07997 * 119.99668 * 179.72470 * 23 22 21 44 44 H 1.07994 * 119.99585 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00682 * 0.02562 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8852 0.0000 6 7 4.0587 0.7519 -1.1952 7 6 3.7337 1.2121 -2.4195 8 8 3.0361 2.1979 -2.5312 9 6 4.2370 0.5019 -3.6496 10 1 3.8741 -0.5260 -3.6498 11 6 5.7670 0.5025 -3.6487 12 6 3.7346 1.2117 -4.8804 13 1 3.1133 2.0895 -4.7818 14 6 4.0681 0.7403 -6.1325 15 7 4.8251 -0.3284 -6.2526 16 14 3.4447 1.6197 -7.6581 17 1 3.9408 0.9199 -8.8703 18 1 1.9597 1.6184 -7.6581 19 1 3.9385 3.0202 -7.6587 20 6 4.0717 0.7325 1.2315 21 6 3.3268 0.7571 2.3957 22 6 3.7849 0.1016 3.5233 23 6 4.9928 -0.5698 3.4896 24 6 5.7402 -0.5900 2.3269 25 6 5.2796 0.0611 1.1978 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6765 1.9563 -0.8900 33 1 3.7169 3.3984 -0.8904 34 1 3.7160 3.3995 0.8896 35 1 5.1698 2.8853 0.0009 36 1 4.6165 -0.0368 -1.1058 37 1 6.1300 -0.0111 -2.7585 38 1 6.1311 -0.0116 -4.5382 39 1 6.1300 1.5303 -3.6486 40 1 5.0594 -0.6602 -7.1335 41 1 2.3854 1.2857 2.4233 42 1 3.2012 0.1177 4.4318 43 1 5.3528 -1.0782 4.3719 44 1 6.6840 -1.1141 2.3008 45 1 5.8639 0.0459 0.2897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889479153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:51 Heat of formation + Delta-G solvation = -43.719798 kcal Electronic energy + Delta-G solvation = -23991.741173 eV Core-core repulsion = 20779.833953 eV Total energy + Delta-G solvation = -3211.907220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62455 -39.82075 -37.33311 -35.70106 -34.60605 -33.08275 -31.92893 -31.50380 -30.24407 -27.66226 -27.18969 -25.11579 -23.87654 -23.27027 -22.44252 -21.30402 -20.21219 -18.76185 -18.21963 -17.20264 -16.72051 -16.39142 -16.07959 -15.90194 -15.54167 -15.29650 -14.98327 -14.76348 -14.39795 -14.30424 -14.17871 -13.61233 -13.53479 -13.36689 -13.08543 -13.04955 -12.90595 -12.81044 -12.64245 -12.50041 -12.31082 -12.17283 -11.99063 -11.89578 -11.68158 -11.53463 -11.45793 -11.03444 -10.54626 -10.07126 -9.95034 -9.75268 -9.51217 -8.13590 -6.23439 0.46124 0.54774 1.40723 1.42162 1.50613 2.03651 2.36388 2.54858 2.94627 3.16102 3.56233 3.80241 4.05931 4.12772 4.18932 4.24929 4.33334 4.35121 4.55007 4.57290 4.66838 4.68400 4.74827 4.75375 4.81915 4.91349 4.96179 4.97320 5.03303 5.04601 5.10233 5.19917 5.25559 5.31633 5.37540 5.46644 5.50985 5.62044 5.64531 5.68077 5.74725 5.87133 5.97210 6.14962 6.23945 6.78503 6.91261 7.42636 7.64629 8.92103 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.004499 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.141823 B = 6222.443257 C = 6809.449062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.216 3.784 5 C -0.152 4.152 6 N -0.719 5.719 7 C 0.528 3.472 8 O -0.571 6.571 9 C 0.024 3.976 10 H 0.033 0.967 11 C -0.118 4.118 12 C -0.524 4.524 13 H 0.050 0.950 14 C 0.019 3.981 15 N -0.912 5.912 16 Si 0.954 3.046 17 H -0.276 1.276 18 H -0.277 1.277 19 H -0.276 1.276 20 C -0.084 4.084 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.133 4.133 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.402 0.598 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.264 0.736 41 H 0.134 0.866 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 -2.042 21.363 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.163 4.163 4 C 0.130 3.870 5 C -0.210 4.210 6 N -0.373 5.373 7 C 0.317 3.683 8 O -0.449 6.449 9 C 0.003 3.997 10 H 0.051 0.949 11 C -0.176 4.176 12 C -0.562 4.562 13 H 0.068 0.932 14 C -0.180 4.180 15 N -0.552 5.552 16 Si 0.780 3.220 17 H -0.201 1.201 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.084 4.084 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.151 4.151 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.239 0.761 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.157 0.843 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.810 -1.452 21.138 21.203 hybrid contribution 0.063 0.101 -1.429 1.434 sum -0.746 -1.351 19.709 19.769 Atomic orbital electron populations 1.21726 0.95153 1.01870 1.01642 1.21453 0.96359 0.96148 1.01367 1.21995 0.93614 0.97929 1.02736 1.19145 0.93844 0.91589 0.82426 1.22126 1.00824 0.95393 1.02701 1.46263 1.54312 1.32122 1.04586 1.21279 0.78238 0.83730 0.85066 1.90451 1.39180 1.28053 1.87250 1.18785 0.95103 0.95694 0.90167 0.94881 1.21537 0.95379 0.99273 1.01420 1.21249 1.31329 1.12644 0.91002 0.93180 1.25594 0.95277 0.95756 1.01406 1.69952 1.37309 1.23673 1.24237 0.85677 0.78634 0.78742 0.78968 1.20058 1.20240 1.20181 1.19739 0.95582 0.98716 0.94398 1.21208 0.99972 0.99970 0.92195 1.21442 0.96650 0.97047 0.98528 1.21499 0.94928 0.99281 0.98542 1.21376 1.00681 0.99048 0.92752 1.21115 0.95910 0.98666 0.99409 0.91072 0.94535 0.92139 0.94706 0.90632 0.89354 0.92714 0.92950 0.90230 0.92857 0.76130 0.93410 0.91222 0.95871 0.92718 0.84797 0.83588 0.83728 0.84340 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.12 -3.21 5.45 30.60 0.17 -3.04 16 3 C -0.12 -3.69 3.55 30.59 0.11 -3.58 16 4 C 0.22 6.38 0.59 2.86 0.00 6.38 16 5 C -0.15 -4.70 8.38 71.98 0.60 -4.09 16 6 N -0.72 -25.08 3.98 -426.35 -1.70 -26.78 16 7 C 0.53 24.06 6.57 87.66 0.58 24.64 16 8 O -0.57 -29.32 11.67 -3.03 -0.04 -29.36 16 9 C 0.02 1.21 2.64 -12.29 -0.03 1.18 16 10 H 0.03 1.78 8.14 -2.38 -0.02 1.76 16 11 C -0.12 -5.48 8.87 71.98 0.64 -4.84 16 12 C -0.52 -30.57 8.37 25.60 0.21 -30.36 16 13 H 0.05 3.11 6.75 -2.91 -0.02 3.09 16 14 C 0.02 1.05 5.30 84.66 0.45 1.50 16 15 N -0.91 -51.93 11.32 21.45 0.24 -51.69 16 16 Si 0.95 45.52 29.54 68.60 2.03 47.55 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 C -0.08 -2.00 4.06 -19.86 -0.08 -2.08 16 21 C -0.12 -2.26 7.79 22.27 0.17 -2.08 16 22 C -0.12 -1.89 10.05 22.27 0.22 -1.66 16 23 C -0.12 -1.94 10.05 22.27 0.22 -1.71 16 24 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 25 C -0.13 -3.00 8.96 22.27 0.20 -2.80 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.03 1.16 7.60 -2.39 -0.02 1.14 16 30 H 0.08 1.84 6.19 -2.39 -0.01 1.82 16 31 H 0.09 2.11 6.51 -2.38 -0.02 2.09 16 32 H 0.05 2.07 6.17 -2.38 -0.01 2.06 16 33 H 0.05 1.99 6.17 -2.39 -0.01 1.97 16 34 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.40 12.60 6.09 -92.70 -0.56 12.03 16 37 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 38 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.13 2.32 6.17 -2.91 -0.02 2.30 16 42 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 45 H 0.12 2.72 6.71 -2.91 -0.02 2.70 16 Total: -1.00 -66.59 349.89 5.35 -61.24 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.41 Total: 26.44 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 4.40 Total: -27.40 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -1.46 Total: -78.47 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.04 Total: -29.36 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -66.59 5.35 -61.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889479153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.519 kcal (2) G-P(sol) polarization free energy of solvation -66.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds