Wall clock time and date at job start Tue Mar 31 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47324 * 2 1 4 4 C 1.53000 * 109.47094 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46806 * 185.00638 * 4 3 2 6 6 N 1.46496 * 109.47096 * 305.00334 * 4 3 2 7 7 C 1.34777 * 120.00258 * 299.99787 * 6 4 3 8 8 O 1.21279 * 120.00166 * 0.02562 * 7 6 4 9 9 C 1.50706 * 119.99762 * 180.02562 * 7 6 4 10 10 H 1.08996 * 109.46822 * 60.00850 * 9 7 6 11 11 C 1.52997 * 109.47238 * 300.00068 * 9 7 6 12 12 C 1.50708 * 109.46685 * 180.02562 * 9 7 6 13 13 H 1.07995 * 119.99755 * 0.02562 * 12 9 7 14 14 C 1.37873 * 119.99729 * 179.97438 * 12 9 7 15 15 N 1.31516 * 119.99909 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99980 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46755 * 90.00221 * 16 14 12 18 18 H 1.48498 * 109.46866 * 210.00208 * 16 14 12 19 19 H 1.48496 * 109.47178 * 330.00271 * 16 14 12 20 20 C 1.50699 * 109.47083 * 65.00528 * 4 3 2 21 21 C 1.38236 * 119.99716 * 29.72855 * 20 4 3 22 22 C 1.38231 * 119.99685 * 179.78971 * 21 20 4 23 23 C 1.38236 * 120.00015 * 0.43417 * 22 21 20 24 24 C 1.38229 * 120.00259 * 359.81782 * 23 22 21 25 25 C 1.38231 * 120.00028 * 209.99544 * 20 4 3 26 26 H 1.08998 * 109.47220 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46752 * 299.99134 * 1 2 3 28 28 H 1.08991 * 109.47712 * 59.99312 * 1 2 3 29 29 H 1.09002 * 109.46752 * 240.00866 * 2 1 3 30 30 H 1.09001 * 109.47711 * 120.00726 * 2 1 3 31 31 H 1.09002 * 109.46499 * 60.00711 * 3 2 1 32 32 H 1.08991 * 109.47288 * 300.00948 * 3 2 1 33 33 H 1.09001 * 109.47248 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47097 * 300.00129 * 5 4 3 35 35 H 1.09001 * 109.47142 * 60.00093 * 5 4 3 36 36 H 0.96999 * 119.99694 * 120.00397 * 6 4 3 37 37 H 1.09002 * 109.47153 * 180.02562 * 11 9 7 38 38 H 1.09001 * 109.46832 * 60.00314 * 11 9 7 39 39 H 1.09004 * 109.47261 * 300.00295 * 11 9 7 40 40 H 0.97002 * 119.99804 * 180.02562 * 15 14 12 41 41 H 1.07998 * 120.00390 * 359.97438 * 21 20 4 42 42 H 1.08007 * 120.00369 * 180.27014 * 22 21 20 43 43 H 1.08002 * 119.99967 * 179.83758 * 23 22 21 44 44 H 1.07997 * 120.00657 * 180.02562 * 24 23 22 45 45 H 1.08002 * 119.99926 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8794 0.1252 6 7 4.0588 0.6500 1.1304 7 6 3.7338 1.0017 2.3902 8 8 3.0363 1.9741 2.5875 9 6 4.2371 0.1867 3.5537 10 1 5.3271 0.1873 3.5530 11 6 3.7276 -1.2504 3.4280 12 6 3.7348 0.7866 4.8417 13 1 3.1129 1.6693 4.8199 14 6 4.0682 0.2078 6.0478 15 7 4.8251 -0.8675 6.0743 16 14 3.4462 0.9516 7.6445 17 1 2.1381 0.3435 7.9972 18 1 4.4247 0.6848 8.7291 19 1 3.2812 2.4178 7.4763 20 6 4.0718 0.8423 -1.2887 21 6 3.3215 0.9588 -2.4439 22 6 3.7838 0.4121 -3.6263 23 6 4.9921 -0.2590 -3.6516 24 6 5.7399 -0.3800 -2.4954 25 6 5.2796 0.1705 -1.3138 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 1.8932 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6766 1.9564 -0.8898 33 1 5.1701 2.8795 0.1243 34 1 3.7163 3.4691 -0.7163 35 1 3.7171 3.3135 1.0569 36 1 4.6164 -0.1279 0.9725 37 1 4.0913 -1.8397 4.2698 38 1 4.0906 -1.6844 2.4964 39 1 2.6375 -1.2508 3.4286 40 1 5.0594 -1.2749 6.9228 41 1 2.3756 1.4796 -2.4232 42 1 3.1997 0.5068 -4.5299 43 1 5.3520 -0.6884 -4.5749 44 1 6.6841 -0.9039 -2.5152 45 1 5.8639 0.0761 -0.4104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889479154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:54 Heat of formation + Delta-G solvation = -27.944337 kcal Electronic energy + Delta-G solvation = -24050.329136 eV Core-core repulsion = 20839.105991 eV Total energy + Delta-G solvation = -3211.223145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37766 -38.51463 -36.02414 -33.68816 -33.28364 -31.60036 -30.86570 -30.12041 -29.03823 -26.50667 -25.10525 -23.72214 -22.63981 -22.19808 -21.27746 -19.91551 -18.77892 -17.48834 -16.16304 -15.90214 -15.38130 -14.97756 -14.85767 -14.47109 -14.24539 -14.08761 -13.56899 -13.37168 -13.21823 -13.08091 -12.57056 -12.48629 -12.34938 -11.99678 -11.88000 -11.58010 -11.41186 -11.26420 -11.03977 -10.98694 -10.69267 -10.64221 -10.53117 -10.40355 -10.30887 -10.16392 -9.91940 -8.96067 -8.93946 -8.81315 -8.47422 -8.30389 -8.20565 -6.00254 -4.02966 1.31087 1.35913 3.35258 3.41026 3.47665 3.70159 3.81613 3.96594 4.49819 4.63179 4.83206 4.93366 5.04555 5.09517 5.27784 5.33126 5.34504 5.45258 5.52624 5.63258 5.73223 5.82981 5.87735 5.96918 5.99681 6.10073 6.11355 6.21525 6.31031 6.35171 6.42231 6.46293 6.55980 6.60122 6.62553 6.65414 6.73012 6.86429 6.94960 6.98204 7.23566 7.51590 7.79166 8.03286 8.20472 8.51387 9.06179 9.32750 9.62657 11.07335 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.004462 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.239610 B = 6273.172867 C = 6667.502460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.128 4.128 4 C 0.216 3.784 5 C -0.157 4.157 6 N -0.737 5.737 7 C 0.524 3.476 8 O -0.540 6.540 9 C 0.029 3.971 10 H 0.050 0.950 11 C -0.131 4.131 12 C -0.497 4.497 13 H 0.074 0.926 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.273 1.273 20 C -0.070 4.070 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.116 4.116 25 C -0.117 4.117 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.394 0.606 37 H 0.092 0.908 38 H 0.010 0.990 39 H 0.030 0.970 40 H 0.260 0.740 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 0.030 -18.694 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.166 4.166 4 C 0.130 3.870 5 C -0.215 4.215 6 N -0.393 5.393 7 C 0.314 3.686 8 O -0.416 6.416 9 C 0.008 3.992 10 H 0.067 0.933 11 C -0.189 4.189 12 C -0.536 4.536 13 H 0.092 0.908 14 C -0.143 4.143 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.071 4.071 21 C -0.129 4.129 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.135 4.135 25 C -0.135 4.135 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.229 0.771 37 H 0.110 0.890 38 H 0.029 0.971 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.381 0.630 -18.386 18.449 hybrid contribution 0.077 -0.172 0.691 0.716 sum -1.304 0.458 -17.695 17.749 Atomic orbital electron populations 1.21734 0.96353 1.01105 1.01389 1.21478 0.95267 0.96892 1.02173 1.22062 0.93652 0.97686 1.03178 1.19030 0.93757 0.91179 0.83060 1.22194 1.00909 0.94813 1.03550 1.46523 1.55396 1.31794 1.05552 1.21835 0.78518 0.84877 0.83330 1.90459 1.37736 1.28398 1.85024 1.18867 0.97579 0.92259 0.90529 0.93266 1.21735 0.99120 0.98129 0.99944 1.21138 1.31211 1.12269 0.88947 0.90773 1.24945 0.95123 0.95026 0.99185 1.69874 1.37245 1.20639 1.25928 0.86479 0.78401 0.79783 0.82705 1.20744 1.21371 1.19776 1.19977 0.94637 0.97551 0.94927 1.21088 0.99717 1.00039 0.92082 1.21111 0.96430 0.98535 0.97772 1.21117 0.95354 0.99927 0.98179 1.21123 0.99821 0.99745 0.92767 1.21052 0.95962 0.98115 0.98375 0.93190 0.92650 0.93395 0.92582 0.91382 0.89087 0.92007 0.92823 0.92632 0.89525 0.77108 0.88960 0.97065 0.95050 0.93050 0.85651 0.86268 0.86407 0.86109 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.75 5.47 -26.73 -0.15 -1.89 16 3 C -0.13 -1.90 3.54 -26.73 -0.09 -2.00 16 4 C 0.22 3.23 0.59 -132.97 -0.08 3.15 16 5 C -0.16 -2.40 8.38 37.16 0.31 -2.09 16 6 N -0.74 -12.61 3.82 -48.68 -0.19 -12.80 16 7 C 0.52 11.45 6.35 -10.98 -0.07 11.38 16 8 O -0.54 -13.14 11.72 5.56 0.07 -13.08 16 9 C 0.03 0.70 2.64 -92.92 -0.25 0.46 16 10 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 11 C -0.13 -3.00 8.86 37.16 0.33 -2.67 16 12 C -0.50 -13.95 8.37 -34.44 -0.29 -14.24 16 13 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 14 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 15 N -0.90 -25.17 11.32 55.43 0.63 -24.54 16 16 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.07 -0.90 4.12 -104.63 -0.43 -1.33 16 21 C -0.11 -1.26 8.17 -39.58 -0.32 -1.59 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.13 -1.25 10.05 -39.59 -0.40 -1.65 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.42 8.96 -39.58 -0.35 -1.78 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.76 6.63 -51.93 -0.34 0.41 16 30 H 0.07 1.16 7.29 -51.93 -0.38 0.78 16 31 H 0.09 1.65 6.32 -51.93 -0.33 1.32 16 32 H 0.06 0.78 6.21 -51.93 -0.32 0.46 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.58 6.17 -51.93 -0.32 1.26 16 36 H 0.39 6.15 6.08 -40.82 -0.25 5.90 16 37 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 38 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.13 1.31 6.04 -52.49 -0.32 0.99 16 42 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.12 1.49 6.71 -52.49 -0.35 1.14 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -29.78 349.87 -8.59 -38.37 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.04 Total: 7.51 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -2.31 Total: -17.56 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.44 Total: -37.34 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.07 Total: -13.08 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.78 -8.59 -38.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889479154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.424 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds