Wall clock time and date at job start Tue Mar 31 2020 06:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46756 * 2 1 4 4 C 1.53004 * 109.46756 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46913 * 184.99751 * 4 3 2 6 6 N 1.46499 * 109.47320 * 305.00023 * 4 3 2 7 7 C 1.34777 * 119.99665 * 300.27951 * 6 4 3 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 4 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 4 10 10 H 1.09003 * 109.47112 * 299.99065 * 9 7 6 11 11 C 1.52995 * 109.47490 * 59.99635 * 9 7 6 12 12 C 1.50698 * 109.46944 * 179.97438 * 9 7 6 13 13 H 1.08001 * 120.00089 * 359.97438 * 12 9 7 14 14 C 1.37882 * 120.00151 * 179.97438 * 12 9 7 15 15 N 1.31511 * 119.99699 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99903 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47070 * 90.00340 * 16 14 12 18 18 H 1.48504 * 109.46932 * 210.00284 * 16 14 12 19 19 H 1.48499 * 109.47539 * 329.99770 * 16 14 12 20 20 C 1.50703 * 109.46924 * 65.00043 * 4 3 2 21 21 C 1.38231 * 120.00234 * 29.72850 * 20 4 3 22 22 C 1.38241 * 120.00145 * 179.80899 * 21 20 4 23 23 C 1.38230 * 119.99442 * 0.39579 * 22 21 20 24 24 C 1.38230 * 120.00397 * 359.85355 * 23 22 21 25 25 C 1.38232 * 119.99523 * 209.99420 * 20 4 3 26 26 H 1.09007 * 109.46734 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47198 * 299.99918 * 1 2 3 28 28 H 1.08997 * 109.47222 * 60.00435 * 1 2 3 29 29 H 1.08999 * 109.47198 * 240.00082 * 2 1 3 30 30 H 1.09001 * 109.47017 * 120.00289 * 2 1 3 31 31 H 1.08999 * 109.47200 * 60.00083 * 3 2 1 32 32 H 1.08997 * 109.46900 * 299.99762 * 3 2 1 33 33 H 1.08995 * 109.47223 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.47179 * 300.00478 * 5 4 3 35 35 H 1.09004 * 109.46762 * 59.99989 * 5 4 3 36 36 H 0.97001 * 119.99790 * 119.99664 * 6 4 3 37 37 H 1.08995 * 109.47139 * 60.00165 * 11 9 7 38 38 H 1.09003 * 109.47199 * 179.97438 * 11 9 7 39 39 H 1.09001 * 109.46983 * 299.99719 * 11 9 7 40 40 H 0.97004 * 119.99534 * 179.97438 * 15 14 12 41 41 H 1.08006 * 120.00149 * 359.97438 * 21 20 4 42 42 H 1.07996 * 119.99560 * 180.22505 * 22 21 20 43 43 H 1.08005 * 119.99324 * 179.83683 * 23 22 21 44 44 H 1.08000 * 119.99994 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00434 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8795 0.1250 6 7 4.0589 0.6502 1.1304 7 6 3.7291 0.9988 2.3899 8 8 3.0319 1.9714 2.5871 9 6 4.2269 0.1801 3.5530 10 1 3.8631 -0.8432 3.4593 11 6 5.7569 0.1789 3.5583 12 6 3.7211 0.7774 4.8408 13 1 3.1015 1.6618 4.8191 14 6 4.0493 0.1950 6.0467 15 7 4.8034 -0.8821 6.0730 16 14 3.4229 0.9360 7.6429 17 1 2.1126 0.3293 7.9896 18 1 4.3971 0.6648 8.7304 19 1 3.2610 2.4029 7.4779 20 6 4.0718 0.8423 -1.2887 21 6 3.3216 0.9586 -2.4439 22 6 3.7837 0.4114 -3.6263 23 6 4.9922 -0.2592 -3.6515 24 6 5.7399 -0.3800 -2.4952 25 6 5.2796 0.1706 -1.3137 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.1699 2.8796 0.1250 34 1 3.7162 3.4691 -0.7165 35 1 3.7170 3.3137 1.0566 36 1 4.6164 -0.1277 0.9726 37 1 6.1207 1.2021 3.6521 38 1 6.1169 -0.4129 4.3999 39 1 6.1231 -0.2530 2.6269 40 1 5.0346 -1.2916 6.9215 41 1 2.3756 1.4794 -2.4233 42 1 3.1992 0.5055 -4.5295 43 1 5.3520 -0.6890 -4.5747 44 1 6.6839 -0.9043 -2.5149 45 1 5.8639 0.0763 -0.4103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889479155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:57 Heat of formation + Delta-G solvation = -27.914732 kcal Electronic energy + Delta-G solvation = -24001.856994 eV Core-core repulsion = 20790.635133 eV Total energy + Delta-G solvation = -3211.221861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37666 -38.51207 -36.03481 -33.68663 -33.28649 -31.58968 -30.86365 -30.12255 -29.05479 -26.50651 -25.10848 -23.71583 -22.63828 -22.21217 -21.27250 -19.92685 -18.76209 -17.51245 -16.20021 -15.86019 -15.39152 -14.98906 -14.78525 -14.46437 -14.23859 -14.11620 -13.68982 -13.41515 -13.18082 -12.96774 -12.63590 -12.45301 -12.34519 -11.94680 -11.89696 -11.66465 -11.36755 -11.26379 -11.04780 -10.97395 -10.70740 -10.67959 -10.51332 -10.44219 -10.30463 -10.14687 -9.92001 -8.95721 -8.94227 -8.81518 -8.48279 -8.29573 -8.20969 -6.00360 -4.02990 1.31088 1.35908 3.35227 3.40972 3.47729 3.70593 3.80632 3.97185 4.49771 4.63139 4.83106 4.93411 5.04365 5.09409 5.27192 5.32741 5.34018 5.45111 5.52601 5.63011 5.72882 5.82715 5.87853 5.96844 5.99715 6.09733 6.10572 6.21313 6.30977 6.34693 6.42235 6.46205 6.55426 6.59703 6.61579 6.64949 6.72218 6.85536 6.95001 6.97476 7.23545 7.51454 7.78673 8.03121 8.20282 8.51375 9.06141 9.32735 9.62603 11.07294 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.004514 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.185892 B = 6201.710128 C = 6785.450208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.128 4.128 4 C 0.216 3.784 5 C -0.156 4.156 6 N -0.737 5.737 7 C 0.525 3.475 8 O -0.540 6.540 9 C 0.029 3.971 10 H 0.050 0.950 11 C -0.132 4.132 12 C -0.497 4.497 13 H 0.074 0.926 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.273 1.273 20 C -0.071 4.071 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.117 4.117 25 C -0.117 4.117 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.394 0.606 37 H 0.030 0.970 38 H 0.092 0.908 39 H 0.010 0.990 40 H 0.260 0.740 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 0.340 -18.672 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.166 4.166 4 C 0.130 3.870 5 C -0.214 4.214 6 N -0.393 5.393 7 C 0.315 3.685 8 O -0.416 6.416 9 C 0.008 3.992 10 H 0.067 0.933 11 C -0.190 4.190 12 C -0.536 4.536 13 H 0.092 0.908 14 C -0.143 4.143 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.071 4.071 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.135 4.135 25 C -0.135 4.135 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.229 0.771 37 H 0.050 0.950 38 H 0.111 0.889 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.959 0.938 -18.364 18.413 hybrid contribution 0.093 -0.165 0.693 0.719 sum -0.867 0.774 -17.671 17.709 Atomic orbital electron populations 1.21739 0.96312 1.01124 1.01422 1.21471 0.95305 0.96895 1.02090 1.22071 0.93666 0.97667 1.03226 1.19030 0.93723 0.91207 0.83057 1.22186 1.00924 0.94797 1.03512 1.46523 1.55277 1.31898 1.05564 1.21830 0.78259 0.85147 0.83309 1.90460 1.37784 1.28370 1.85006 1.18862 0.94049 0.95689 0.90637 0.93252 1.21733 0.96694 1.00412 1.00124 1.21138 1.30808 1.12583 0.89043 0.90772 1.24947 0.95175 0.94970 0.99195 1.69875 1.37326 1.20510 1.25969 0.86478 0.78434 0.79755 0.82690 1.20737 1.21372 1.19781 1.19978 0.94646 0.97557 0.94930 1.21091 0.99723 1.00042 0.92083 1.21110 0.96429 0.98541 0.97771 1.21117 0.95351 0.99928 0.98178 1.21125 0.99822 0.99748 0.92766 1.21058 0.95953 0.98091 0.98386 0.93176 0.92613 0.93378 0.92540 0.91547 0.89049 0.91969 0.92818 0.92648 0.89555 0.77108 0.95034 0.88939 0.97110 0.93050 0.85650 0.86267 0.86407 0.86112 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.73 5.47 -26.73 -0.15 -1.88 16 3 C -0.13 -1.91 3.54 -26.73 -0.09 -2.00 16 4 C 0.22 3.23 0.59 -132.97 -0.08 3.15 16 5 C -0.16 -2.40 8.39 37.16 0.31 -2.09 16 6 N -0.74 -12.62 3.83 -48.68 -0.19 -12.80 16 7 C 0.52 11.46 6.34 -10.99 -0.07 11.39 16 8 O -0.54 -13.15 11.73 5.55 0.07 -13.08 16 9 C 0.03 0.70 2.64 -92.93 -0.25 0.46 16 10 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 11 C -0.13 -3.00 8.87 37.16 0.33 -2.67 16 12 C -0.50 -13.95 8.37 -34.44 -0.29 -14.24 16 13 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 14 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 15 N -0.90 -25.18 11.32 55.43 0.63 -24.55 16 16 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.07 -0.91 4.12 -104.63 -0.43 -1.34 16 21 C -0.11 -1.26 8.17 -39.58 -0.32 -1.59 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.13 -1.25 10.05 -39.59 -0.40 -1.65 16 24 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.42 8.96 -39.58 -0.35 -1.78 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.76 6.63 -51.93 -0.34 0.41 16 30 H 0.07 1.12 7.28 -51.93 -0.38 0.74 16 31 H 0.09 1.65 6.31 -51.93 -0.33 1.32 16 32 H 0.06 0.79 6.21 -51.93 -0.32 0.46 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.58 6.18 -51.93 -0.32 1.26 16 36 H 0.39 6.16 6.09 -40.82 -0.25 5.91 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 39 H 0.01 0.19 7.56 -51.93 -0.39 -0.20 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 41 H 0.13 1.31 6.04 -52.48 -0.32 0.99 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.12 1.50 6.71 -52.49 -0.35 1.15 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -29.78 349.86 -8.59 -38.37 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.04 Total: 7.50 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.31 Total: -17.53 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.44 Total: -37.35 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.07 Total: -13.08 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.78 -8.59 -38.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889479155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.457 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds