Wall clock time and date at job start Tue Mar 31 2020 06:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46756 * 2 1 4 4 C 1.53004 * 109.46756 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46913 * 184.99751 * 4 3 2 6 6 N 1.46499 * 109.47320 * 305.00023 * 4 3 2 7 7 C 1.34777 * 119.99665 * 300.27951 * 6 4 3 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 4 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 4 10 10 H 1.09003 * 109.47112 * 299.99065 * 9 7 6 11 11 C 1.52995 * 109.47490 * 59.99635 * 9 7 6 12 12 C 1.50698 * 109.46944 * 179.97438 * 9 7 6 13 13 H 1.08001 * 120.00089 * 359.97438 * 12 9 7 14 14 C 1.37882 * 120.00151 * 179.97438 * 12 9 7 15 15 N 1.31511 * 119.99699 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99903 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47070 * 90.00340 * 16 14 12 18 18 H 1.48504 * 109.46932 * 210.00284 * 16 14 12 19 19 H 1.48499 * 109.47539 * 329.99770 * 16 14 12 20 20 C 1.50703 * 109.46924 * 65.00043 * 4 3 2 21 21 C 1.38231 * 120.00234 * 29.72850 * 20 4 3 22 22 C 1.38241 * 120.00145 * 179.80899 * 21 20 4 23 23 C 1.38230 * 119.99442 * 0.39579 * 22 21 20 24 24 C 1.38230 * 120.00397 * 359.85355 * 23 22 21 25 25 C 1.38232 * 119.99523 * 209.99420 * 20 4 3 26 26 H 1.09007 * 109.46734 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47198 * 299.99918 * 1 2 3 28 28 H 1.08997 * 109.47222 * 60.00435 * 1 2 3 29 29 H 1.08999 * 109.47198 * 240.00082 * 2 1 3 30 30 H 1.09001 * 109.47017 * 120.00289 * 2 1 3 31 31 H 1.08999 * 109.47200 * 60.00083 * 3 2 1 32 32 H 1.08997 * 109.46900 * 299.99762 * 3 2 1 33 33 H 1.08995 * 109.47223 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.47179 * 300.00478 * 5 4 3 35 35 H 1.09004 * 109.46762 * 59.99989 * 5 4 3 36 36 H 0.97001 * 119.99790 * 119.99664 * 6 4 3 37 37 H 1.08995 * 109.47139 * 60.00165 * 11 9 7 38 38 H 1.09003 * 109.47199 * 179.97438 * 11 9 7 39 39 H 1.09001 * 109.46983 * 299.99719 * 11 9 7 40 40 H 0.97004 * 119.99534 * 179.97438 * 15 14 12 41 41 H 1.08006 * 120.00149 * 359.97438 * 21 20 4 42 42 H 1.07996 * 119.99560 * 180.22505 * 22 21 20 43 43 H 1.08005 * 119.99324 * 179.83683 * 23 22 21 44 44 H 1.08000 * 119.99994 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00434 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8795 0.1250 6 7 4.0589 0.6502 1.1304 7 6 3.7291 0.9988 2.3899 8 8 3.0319 1.9714 2.5871 9 6 4.2269 0.1801 3.5530 10 1 3.8631 -0.8432 3.4593 11 6 5.7569 0.1789 3.5583 12 6 3.7211 0.7774 4.8408 13 1 3.1015 1.6618 4.8191 14 6 4.0493 0.1950 6.0467 15 7 4.8034 -0.8821 6.0730 16 14 3.4229 0.9360 7.6429 17 1 2.1126 0.3293 7.9896 18 1 4.3971 0.6648 8.7304 19 1 3.2610 2.4029 7.4779 20 6 4.0718 0.8423 -1.2887 21 6 3.3216 0.9586 -2.4439 22 6 3.7837 0.4114 -3.6263 23 6 4.9922 -0.2592 -3.6515 24 6 5.7399 -0.3800 -2.4952 25 6 5.2796 0.1706 -1.3137 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.1699 2.8796 0.1250 34 1 3.7162 3.4691 -0.7165 35 1 3.7170 3.3137 1.0566 36 1 4.6164 -0.1277 0.9726 37 1 6.1207 1.2021 3.6521 38 1 6.1169 -0.4129 4.3999 39 1 6.1231 -0.2530 2.6269 40 1 5.0346 -1.2916 6.9215 41 1 2.3756 1.4794 -2.4233 42 1 3.1992 0.5055 -4.5295 43 1 5.3520 -0.6890 -4.5747 44 1 6.6839 -0.9043 -2.5149 45 1 5.8639 0.0763 -0.4103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889479155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:57 Heat of formation + Delta-G solvation = -43.265867 kcal Electronic energy + Delta-G solvation = -24002.522669 eV Core-core repulsion = 20790.635133 eV Total energy + Delta-G solvation = -3211.887536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61910 -39.81220 -37.33589 -35.70089 -34.57268 -33.10361 -31.94552 -31.50330 -30.23695 -27.66278 -27.18984 -25.11506 -23.88081 -23.29824 -22.40895 -21.29424 -20.22499 -18.76089 -18.22667 -17.19866 -16.72664 -16.38957 -16.08013 -15.89733 -15.55008 -15.29005 -14.97975 -14.76523 -14.40233 -14.28205 -14.19295 -13.61636 -13.54378 -13.38204 -13.07743 -13.05036 -12.91243 -12.79512 -12.63409 -12.49836 -12.30565 -12.16628 -11.99920 -11.89724 -11.68394 -11.54295 -11.43362 -11.02585 -10.54810 -10.07321 -9.94875 -9.76081 -9.51714 -8.13844 -6.23543 0.46168 0.54785 1.40041 1.40669 1.52574 2.04233 2.36515 2.54987 2.94685 3.15962 3.56511 3.80062 4.05678 4.11833 4.18839 4.25160 4.33431 4.34865 4.55395 4.57032 4.66593 4.68416 4.74897 4.75406 4.82633 4.91218 4.95965 4.97170 5.03118 5.04367 5.10392 5.20080 5.25443 5.31973 5.37966 5.46095 5.51058 5.62118 5.64281 5.68070 5.74845 5.87137 5.97226 6.14976 6.23956 6.78811 6.91504 7.42689 7.65165 8.92075 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.004514 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.185892 B = 6201.710128 C = 6785.450208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.124 4.124 4 C 0.215 3.785 5 C -0.152 4.152 6 N -0.719 5.719 7 C 0.528 3.472 8 O -0.570 6.570 9 C 0.023 3.977 10 H 0.033 0.967 11 C -0.118 4.118 12 C -0.523 4.523 13 H 0.050 0.950 14 C 0.018 3.982 15 N -0.912 5.912 16 Si 0.954 3.046 17 H -0.276 1.276 18 H -0.275 1.275 19 H -0.278 1.278 20 C -0.084 4.084 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.132 4.132 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.402 0.598 37 H 0.022 0.978 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.263 0.737 41 H 0.135 0.865 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 -0.166 -21.396 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.162 4.162 4 C 0.130 3.870 5 C -0.210 4.210 6 N -0.373 5.373 7 C 0.317 3.683 8 O -0.449 6.449 9 C 0.002 3.998 10 H 0.051 0.949 11 C -0.176 4.176 12 C -0.561 4.561 13 H 0.068 0.932 14 C -0.180 4.180 15 N -0.552 5.552 16 Si 0.780 3.220 17 H -0.201 1.201 18 H -0.201 1.201 19 H -0.203 1.203 20 C -0.085 4.085 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.151 4.151 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.239 0.761 37 H 0.041 0.959 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.157 0.843 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.782 0.408 -21.121 21.139 hybrid contribution 0.063 -0.039 1.433 1.435 sum -0.719 0.370 -19.688 19.704 Atomic orbital electron populations 1.21724 0.95123 1.01840 1.01668 1.21406 0.96370 0.96236 1.01169 1.22007 0.93595 0.97891 1.02701 1.19142 0.93853 0.90741 0.83283 1.22121 1.00823 0.95379 1.02686 1.46269 1.54246 1.31939 1.04828 1.21269 0.78192 0.84493 0.84323 1.90455 1.39182 1.29561 1.85717 1.18788 0.95132 0.94911 0.90942 0.94879 1.21536 0.95365 0.99658 1.01059 1.21277 1.31317 1.12320 0.91195 0.93201 1.25592 0.95288 0.95367 1.01801 1.69958 1.37497 1.20961 1.26776 0.85621 0.78324 0.78613 0.79477 1.20132 1.20056 1.20325 1.19740 0.95571 0.99092 0.94048 1.21231 0.99943 1.00285 0.92002 1.21444 0.96634 0.97447 0.98119 1.21498 0.94957 0.98954 0.98856 1.21378 1.00671 0.99399 0.92402 1.21114 0.95957 0.98928 0.99082 0.92251 0.94470 0.91003 0.90923 0.94812 0.92747 0.89173 0.92851 0.90233 0.92980 0.76138 0.95865 0.91233 0.93404 0.92732 0.84748 0.83589 0.83728 0.84334 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.91 71.98 0.71 -2.93 16 2 C -0.11 -3.23 5.47 30.60 0.17 -3.07 16 3 C -0.12 -3.66 3.54 30.60 0.11 -3.55 16 4 C 0.22 6.37 0.59 2.86 0.00 6.37 16 5 C -0.15 -4.68 8.39 71.98 0.60 -4.08 16 6 N -0.72 -25.04 3.83 -426.32 -1.63 -26.67 16 7 C 0.53 24.05 6.34 87.66 0.56 24.61 16 8 O -0.57 -29.31 11.73 -3.04 -0.04 -29.35 16 9 C 0.02 1.20 2.64 -12.29 -0.03 1.16 16 10 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 11 C -0.12 -5.48 8.87 71.98 0.64 -4.85 16 12 C -0.52 -30.51 8.37 25.60 0.21 -30.30 16 13 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 14 C 0.02 1.04 5.30 84.66 0.45 1.49 16 15 N -0.91 -51.93 11.32 21.45 0.24 -51.69 16 16 Si 0.95 45.54 29.54 68.60 2.03 47.56 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 C -0.08 -2.00 4.12 -19.87 -0.08 -2.09 16 21 C -0.12 -2.28 8.17 22.27 0.18 -2.10 16 22 C -0.12 -1.89 10.05 22.27 0.22 -1.66 16 23 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 24 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 25 C -0.13 -3.00 8.96 22.27 0.20 -2.80 16 26 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.82 6.63 -2.39 -0.02 1.80 16 30 H 0.03 1.16 7.28 -2.39 -0.02 1.14 16 31 H 0.05 2.04 6.31 -2.39 -0.02 2.02 16 32 H 0.09 2.12 6.21 -2.39 -0.01 2.11 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.97 6.18 -2.38 -0.01 1.96 16 36 H 0.40 12.58 6.09 -92.71 -0.56 12.02 16 37 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 39 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 40 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.13 2.32 6.04 -2.91 -0.02 2.31 16 42 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 45 H 0.12 2.72 6.71 -2.91 -0.02 2.70 16 Total: -1.00 -66.70 349.86 5.41 -61.29 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.41 Total: 26.32 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 4.39 Total: -27.48 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -1.39 Total: -78.36 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.04 Total: -29.35 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -66.70 5.41 -61.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889479155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.028 kcal (2) G-P(sol) polarization free energy of solvation -66.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds