Wall clock time and date at job start Tue Mar 31 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 C 1.53001 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46889 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47406 * 59.99550 * 4 3 2 7 7 C 1.34780 * 119.99550 * 59.99614 * 6 4 3 8 8 O 1.21274 * 120.00259 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99723 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.47107 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47041 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99952 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99576 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00468 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99903 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46938 * 89.99863 * 15 13 11 17 17 H 1.48489 * 109.47300 * 209.99844 * 15 13 11 18 18 H 1.48496 * 109.47031 * 330.00294 * 15 13 11 19 19 C 1.50706 * 109.46826 * 299.99881 * 4 3 2 20 20 C 1.38237 * 119.99744 * 150.00542 * 19 4 3 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 4 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00223 * 330.01753 * 19 4 3 25 25 H 1.08999 * 109.47154 * 299.99672 * 1 2 3 26 26 H 1.08991 * 109.47333 * 60.00541 * 1 2 3 27 27 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47053 * 239.99550 * 2 1 3 29 29 H 1.09001 * 109.47069 * 119.99938 * 2 1 3 30 30 H 1.08996 * 109.47173 * 59.99736 * 3 2 1 31 31 H 1.09001 * 109.46660 * 299.99862 * 3 2 1 32 32 H 1.09000 * 109.47055 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47313 * 299.99349 * 5 4 3 34 34 H 1.09000 * 109.47547 * 59.99968 * 5 4 3 35 35 H 0.96996 * 120.00154 * 240.00318 * 6 4 3 36 36 H 1.09009 * 109.47428 * 300.00432 * 9 7 6 37 37 H 1.09001 * 109.47068 * 60.00404 * 9 7 6 38 38 H 1.09000 * 109.46902 * 299.99867 * 10 9 7 39 39 H 1.08998 * 109.46904 * 59.99898 * 10 9 7 40 40 H 0.96998 * 120.00536 * 180.02562 * 14 13 11 41 41 H 1.08005 * 120.00088 * 359.97438 * 20 19 4 42 42 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07998 * 119.99975 * 0.02562 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 7 4.0589 0.7517 -1.1951 7 6 3.7337 1.2119 -2.4195 8 8 3.0369 2.1981 -2.5313 9 6 4.2371 0.5016 -3.6496 10 6 3.7280 1.2228 -4.8992 11 6 4.2308 0.5122 -6.1293 12 1 4.8518 -0.3658 -6.0297 13 6 3.8981 0.9829 -7.3818 14 7 3.1415 2.0517 -7.5030 15 14 4.5220 0.1024 -8.9066 16 1 3.5445 -0.9399 -9.3111 17 1 4.6870 1.0814 -10.0108 18 1 5.8303 -0.5344 -8.6100 19 6 4.0717 0.7323 1.2315 20 6 5.2797 0.0609 1.1979 21 6 5.7397 -0.5910 2.3268 22 6 4.9923 -0.5706 3.4895 23 6 3.7821 0.0966 3.5217 24 6 3.3240 0.7519 2.3940 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 5.1699 2.8850 0.0009 33 1 3.7170 3.3983 -0.8905 34 1 3.7162 3.3994 0.8895 35 1 4.6165 -0.0370 -1.1057 36 1 5.3272 0.5020 -3.6489 37 1 3.8742 -0.5262 -3.6497 38 1 2.6380 1.2227 -4.9000 39 1 4.0912 2.2505 -4.8988 40 1 2.9071 2.3827 -8.3841 41 1 5.8636 0.0451 0.2895 42 1 6.6832 -1.1158 2.3004 43 1 5.3519 -1.0796 4.3715 44 1 3.1961 0.1088 4.4287 45 1 2.3800 1.2759 2.4200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889482236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:43 Heat of formation + Delta-G solvation = -34.218002 kcal Electronic energy + Delta-G solvation = -23332.391339 eV Core-core repulsion = 20120.896148 eV Total energy + Delta-G solvation = -3211.495191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61233 -38.77810 -36.27563 -33.55670 -33.42279 -31.81629 -31.04563 -30.63725 -29.39251 -26.67136 -25.69556 -23.61665 -22.65638 -21.77029 -21.41907 -19.92659 -19.15551 -17.71017 -16.60858 -15.89496 -15.56347 -15.20850 -15.08419 -14.56849 -14.45553 -14.35209 -14.02215 -13.55280 -13.43232 -13.25719 -12.74834 -12.60034 -12.36806 -12.22916 -12.04613 -12.00948 -11.60850 -11.42582 -11.21004 -11.12106 -10.92269 -10.68477 -10.62827 -10.58302 -10.49903 -9.92145 -9.60563 -9.11902 -9.09455 -8.99786 -8.83393 -8.59903 -8.30295 -5.94664 -3.98822 1.15896 1.21523 3.30065 3.34156 3.40021 3.42437 3.50006 3.68437 4.44131 4.48888 4.66775 4.79974 4.87772 4.95257 5.09725 5.17400 5.30029 5.37922 5.40343 5.41224 5.56787 5.62148 5.71859 5.77434 5.83491 5.86983 5.95766 5.97568 6.04955 6.19532 6.25006 6.26045 6.27488 6.32447 6.35093 6.41544 6.45839 6.56037 6.80303 6.90307 6.93171 7.76253 7.89011 7.96659 8.09146 8.41060 8.84986 9.10044 9.64646 11.16205 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.003519 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.527138 B = 7955.043436 C = 8421.576972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.131 4.131 4 C 0.218 3.782 5 C -0.158 4.158 6 N -0.735 5.735 7 C 0.514 3.486 8 O -0.528 6.528 9 C -0.131 4.131 10 C 0.039 3.961 11 C -0.527 4.527 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.073 4.073 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.109 4.109 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.395 0.605 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 -5.064 23.414 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.169 4.169 4 C 0.132 3.868 5 C -0.216 4.216 6 N -0.390 5.390 7 C 0.303 3.697 8 O -0.404 6.404 9 C -0.171 4.171 10 C 0.001 3.999 11 C -0.565 4.565 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.074 4.074 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.137 4.137 24 C -0.127 4.127 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.230 0.770 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.128 -4.211 23.172 23.579 hybrid contribution 0.669 -0.915 -0.751 1.360 sum 1.796 -5.126 22.421 23.070 Atomic orbital electron populations 1.21747 0.96102 1.01242 1.01670 1.21517 0.95557 0.96796 1.02012 1.22087 0.93401 0.97702 1.03721 1.19064 0.93882 0.91788 0.82097 1.22204 1.00995 0.94830 1.03598 1.46437 1.55149 1.32269 1.05183 1.21440 0.79380 0.84568 0.84329 1.90595 1.37070 1.26134 1.86579 1.21878 1.01344 1.00396 0.93525 1.18875 0.97070 0.95541 0.88370 1.21232 1.31836 1.12366 0.91073 0.92687 1.25014 0.95214 0.95032 0.99090 1.69992 1.36579 1.22845 1.23411 0.86609 0.79180 0.79388 0.82873 1.20693 1.21243 1.19904 1.19936 0.94771 0.97665 0.95018 1.21015 0.95871 0.97985 0.98749 1.21126 0.99850 0.99425 0.93050 1.21143 0.95243 0.99923 0.98077 1.21133 0.96399 0.98006 0.98201 1.21079 0.99742 0.99522 0.92333 0.93196 0.92514 0.93096 0.91887 0.92243 0.91650 0.88820 0.92697 0.89475 0.92293 0.76987 0.90432 0.90435 0.95843 0.95843 0.92986 0.85860 0.86059 0.86297 0.86133 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.50 5.45 -26.73 -0.15 -1.64 16 3 C -0.13 -1.72 3.55 -26.73 -0.09 -1.81 16 4 C 0.22 2.79 0.59 -132.97 -0.08 2.71 16 5 C -0.16 -2.14 8.38 37.15 0.31 -1.83 16 6 N -0.74 -10.30 4.09 -48.69 -0.20 -10.49 16 7 C 0.51 9.54 7.25 -10.99 -0.08 9.46 16 8 O -0.53 -11.64 12.19 5.56 0.07 -11.58 16 9 C -0.13 -2.65 5.64 -27.88 -0.16 -2.81 16 10 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 11 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 15 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.07 -0.80 4.07 -104.62 -0.43 -1.23 16 20 C -0.12 -1.19 8.96 -39.58 -0.35 -1.55 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 22 C -0.13 -1.06 10.05 -39.58 -0.40 -1.45 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.11 -1.07 7.77 -39.58 -0.31 -1.37 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.89 7.61 -51.93 -0.39 0.49 16 29 H 0.06 0.68 6.17 -51.93 -0.32 0.36 16 30 H 0.06 0.74 6.51 -51.93 -0.34 0.40 16 31 H 0.09 1.55 6.17 -51.93 -0.32 1.23 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.44 6.16 -51.93 -0.32 1.12 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.39 4.64 6.67 -40.82 -0.27 4.37 16 36 H 0.08 1.44 8.14 -51.92 -0.42 1.01 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.12 1.16 6.71 -52.48 -0.35 0.80 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.13 1.13 6.16 -52.49 -0.32 0.81 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -32.57 356.55 -8.98 -41.55 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.25 Total: 3.64 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -2.69 Total: -18.50 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.54 Total: -37.20 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.58 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.57 -8.98 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889482236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.333 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds