Wall clock time and date at job start Tue Mar 31 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 C 1.53001 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.46889 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47406 * 59.99550 * 4 3 2 7 7 C 1.34780 * 119.99550 * 59.99614 * 6 4 3 8 8 O 1.21274 * 120.00259 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99723 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.47107 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47041 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99952 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99576 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00468 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99903 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46938 * 89.99863 * 15 13 11 17 17 H 1.48489 * 109.47300 * 209.99844 * 15 13 11 18 18 H 1.48496 * 109.47031 * 330.00294 * 15 13 11 19 19 C 1.50706 * 109.46826 * 299.99881 * 4 3 2 20 20 C 1.38237 * 119.99744 * 150.00542 * 19 4 3 21 21 C 1.38235 * 119.99712 * 180.02562 * 20 19 4 22 22 C 1.38234 * 120.00220 * 359.94731 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00223 * 330.01753 * 19 4 3 25 25 H 1.08999 * 109.47154 * 299.99672 * 1 2 3 26 26 H 1.08991 * 109.47333 * 60.00541 * 1 2 3 27 27 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47053 * 239.99550 * 2 1 3 29 29 H 1.09001 * 109.47069 * 119.99938 * 2 1 3 30 30 H 1.08996 * 109.47173 * 59.99736 * 3 2 1 31 31 H 1.09001 * 109.46660 * 299.99862 * 3 2 1 32 32 H 1.09000 * 109.47055 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47313 * 299.99349 * 5 4 3 34 34 H 1.09000 * 109.47547 * 59.99968 * 5 4 3 35 35 H 0.96996 * 120.00154 * 240.00318 * 6 4 3 36 36 H 1.09009 * 109.47428 * 300.00432 * 9 7 6 37 37 H 1.09001 * 109.47068 * 60.00404 * 9 7 6 38 38 H 1.09000 * 109.46902 * 299.99867 * 10 9 7 39 39 H 1.08998 * 109.46904 * 59.99898 * 10 9 7 40 40 H 0.96998 * 120.00536 * 180.02562 * 14 13 11 41 41 H 1.08005 * 120.00088 * 359.97438 * 20 19 4 42 42 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07998 * 119.99975 * 0.02562 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 7 4.0589 0.7517 -1.1951 7 6 3.7337 1.2119 -2.4195 8 8 3.0369 2.1981 -2.5313 9 6 4.2371 0.5016 -3.6496 10 6 3.7280 1.2228 -4.8992 11 6 4.2308 0.5122 -6.1293 12 1 4.8518 -0.3658 -6.0297 13 6 3.8981 0.9829 -7.3818 14 7 3.1415 2.0517 -7.5030 15 14 4.5220 0.1024 -8.9066 16 1 3.5445 -0.9399 -9.3111 17 1 4.6870 1.0814 -10.0108 18 1 5.8303 -0.5344 -8.6100 19 6 4.0717 0.7323 1.2315 20 6 5.2797 0.0609 1.1979 21 6 5.7397 -0.5910 2.3268 22 6 4.9923 -0.5706 3.4895 23 6 3.7821 0.0966 3.5217 24 6 3.3240 0.7519 2.3940 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 5.1699 2.8850 0.0009 33 1 3.7170 3.3983 -0.8905 34 1 3.7162 3.3994 0.8895 35 1 4.6165 -0.0370 -1.1057 36 1 5.3272 0.5020 -3.6489 37 1 3.8742 -0.5262 -3.6497 38 1 2.6380 1.2227 -4.9000 39 1 4.0912 2.2505 -4.8988 40 1 2.9071 2.3827 -8.3841 41 1 5.8636 0.0451 0.2895 42 1 6.6832 -1.1158 2.3004 43 1 5.3519 -1.0796 4.3715 44 1 3.1961 0.1088 4.4287 45 1 2.3800 1.2759 2.4200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889482236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:42 Heat of formation + Delta-G solvation = -52.597768 kcal Electronic energy + Delta-G solvation = -23333.188346 eV Core-core repulsion = 20120.896148 eV Total energy + Delta-G solvation = -3212.292198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.70302 -39.90295 -37.39796 -35.52552 -34.68329 -33.27378 -32.32023 -31.64897 -30.37192 -27.77098 -27.60112 -24.77491 -23.56335 -23.19547 -22.45771 -21.25332 -20.38704 -19.00258 -18.31502 -17.10027 -16.85410 -16.50456 -16.43296 -15.95691 -15.63411 -15.40133 -15.03212 -14.83280 -14.47556 -14.27699 -14.17976 -14.07441 -13.60086 -13.41170 -13.23582 -13.14819 -12.98668 -12.84246 -12.68102 -12.47991 -12.33106 -11.94431 -11.89943 -11.72096 -11.64970 -11.56163 -11.48759 -11.27745 -10.56532 -10.41603 -10.06371 -9.76555 -9.55104 -8.17681 -6.31549 0.44103 0.53790 1.41531 1.44216 1.55117 1.79922 2.26757 2.45025 2.92582 3.15205 3.51510 3.76385 4.02878 4.04767 4.15346 4.18167 4.23227 4.33486 4.45478 4.52485 4.54463 4.57074 4.64410 4.66699 4.72592 4.78121 4.90958 4.96080 5.01572 5.07730 5.10718 5.18468 5.23705 5.28620 5.33322 5.44169 5.50048 5.57072 5.62050 5.65411 5.67559 5.79422 5.86889 6.13467 6.18925 6.68233 6.87116 7.38189 7.43445 8.94791 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.003519 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.527138 B = 7955.043436 C = 8421.576972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.128 4.128 4 C 0.219 3.781 5 C -0.155 4.155 6 N -0.713 5.713 7 C 0.516 3.484 8 O -0.571 6.571 9 C -0.122 4.122 10 C 0.047 3.953 11 C -0.544 4.544 12 H 0.073 0.927 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.972 3.028 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.256 1.256 19 C -0.086 4.086 20 C -0.129 4.129 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.116 4.116 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.409 0.591 36 H 0.100 0.900 37 H 0.098 0.902 38 H -0.018 1.018 39 H -0.017 1.017 40 H 0.262 0.738 41 H 0.125 0.875 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -7.533 25.553 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.166 4.166 4 C 0.133 3.867 5 C -0.213 4.213 6 N -0.367 5.367 7 C 0.305 3.695 8 O -0.449 6.449 9 C -0.162 4.162 10 C 0.009 3.991 11 C -0.581 4.581 12 H 0.092 0.908 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.796 3.204 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.180 1.180 19 C -0.086 4.086 20 C -0.148 4.148 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.134 4.134 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.247 0.753 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.000 1.000 39 H 0.001 0.999 40 H 0.071 0.929 41 H 0.143 0.857 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.612 -6.721 25.358 26.363 hybrid contribution 0.213 -0.128 -1.302 1.325 sum 2.825 -6.849 24.056 25.171 Atomic orbital electron populations 1.21744 0.95486 1.01914 1.01522 1.21456 0.96106 0.95942 1.01696 1.22022 0.93722 0.98144 1.02726 1.19100 0.93695 0.91516 0.82351 1.22147 1.01090 0.95380 1.02699 1.46166 1.54091 1.32210 1.04277 1.21109 0.79096 0.83968 0.85373 1.90602 1.39066 1.27987 1.87278 1.21648 1.02510 1.00523 0.91508 1.18637 0.94429 0.94239 0.91796 1.21719 1.31833 1.12861 0.91737 0.90842 1.26114 0.95243 0.95762 1.03234 1.70170 1.38195 1.24885 1.24413 0.85344 0.79282 0.78017 0.77751 1.19729 1.21143 1.17953 1.19707 0.95744 0.98910 0.94254 1.21128 0.95680 0.98367 0.99580 1.21393 1.00661 0.99045 0.92715 1.21507 0.94877 0.99208 0.98694 1.21429 0.96710 0.97181 0.98511 1.21199 0.99951 0.99879 0.92343 0.91360 0.94660 0.92002 0.94028 0.90492 0.89580 0.92813 0.92397 0.93071 0.90411 0.75315 0.88199 0.88401 0.99963 0.99872 0.92886 0.85681 0.84169 0.83905 0.83882 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.91 71.98 0.71 -2.63 16 2 C -0.11 -2.76 5.45 30.60 0.17 -2.60 16 3 C -0.13 -3.40 3.55 30.60 0.11 -3.29 16 4 C 0.22 5.56 0.59 2.86 0.00 5.56 16 5 C -0.16 -4.28 8.38 71.98 0.60 -3.67 16 6 N -0.71 -19.97 4.09 -426.33 -1.74 -21.72 16 7 C 0.52 19.92 7.25 87.66 0.64 20.56 16 8 O -0.57 -27.04 12.19 -3.01 -0.04 -27.08 16 9 C -0.12 -5.00 5.64 29.85 0.17 -4.83 16 10 C 0.05 2.62 4.26 29.85 0.13 2.75 16 11 C -0.54 -31.34 9.11 25.60 0.23 -31.10 16 12 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 13 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 14 N -0.94 -59.93 13.29 21.44 0.28 -59.64 16 15 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 19 C -0.09 -1.71 4.07 -19.86 -0.08 -1.79 16 20 C -0.13 -2.32 8.96 22.27 0.20 -2.12 16 21 C -0.12 -1.75 10.05 22.27 0.22 -1.53 16 22 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 23 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 24 C -0.12 -1.96 7.77 22.27 0.17 -1.79 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 26 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.17 7.61 -2.39 -0.02 1.15 16 29 H 0.08 1.60 6.17 -2.39 -0.01 1.58 16 30 H 0.09 1.88 6.51 -2.39 -0.02 1.87 16 31 H 0.05 1.89 6.17 -2.39 -0.01 1.88 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.80 6.16 -2.39 -0.01 1.78 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.41 9.14 6.67 -92.71 -0.62 8.53 16 36 H 0.10 3.63 8.14 -2.38 -0.02 3.61 16 37 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 38 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 39 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 40 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.13 2.10 6.71 -2.91 -0.02 2.08 16 42 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 43 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 45 H 0.13 2.02 6.16 -2.91 -0.02 2.00 16 Total: -1.00 -74.77 356.55 5.06 -69.71 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.35 Total: 21.16 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 4.18 Total: -29.20 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -1.46 Total: -81.36 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.04 Total: -27.08 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -74.77 5.06 -69.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889482236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.113 kcal (2) G-P(sol) polarization free energy of solvation -74.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds