Wall clock time and date at job start Tue Mar 31 2020 06:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47054 * 185.00114 * 4 3 2 6 6 N 1.46496 * 109.47070 * 305.00294 * 4 3 2 7 7 C 1.34770 * 120.00206 * 299.99568 * 6 4 3 8 8 O 1.21282 * 120.00037 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00208 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47219 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47219 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99789 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99922 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00193 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99962 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46810 * 60.00146 * 15 13 11 17 17 H 1.48500 * 109.47090 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47182 * 300.00480 * 15 13 11 19 19 C 1.50699 * 109.46610 * 65.00295 * 4 3 2 20 20 C 1.38230 * 120.00743 * 29.72526 * 19 4 3 21 21 C 1.38231 * 120.00475 * 179.78757 * 20 19 4 22 22 C 1.38236 * 119.99990 * 0.43993 * 21 20 19 23 23 C 1.38233 * 119.99711 * 359.81608 * 22 21 20 24 24 C 1.38237 * 120.00326 * 359.97438 * 23 22 21 25 25 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 26 26 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 28 28 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 29 29 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 30 30 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 31 31 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 32 32 H 1.08995 * 109.47070 * 60.00530 * 5 4 3 33 33 H 1.09002 * 109.47069 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47018 * 300.00144 * 5 4 3 35 35 H 0.97003 * 120.00320 * 120.00161 * 6 4 3 36 36 H 1.08996 * 109.47092 * 299.99874 * 9 7 6 37 37 H 1.09002 * 109.47015 * 60.00325 * 9 7 6 38 38 H 1.08998 * 109.47609 * 300.00219 * 10 9 7 39 39 H 1.09002 * 109.46911 * 60.00200 * 10 9 7 40 40 H 0.97000 * 119.99824 * 180.02562 * 14 13 11 41 41 H 1.08009 * 119.99776 * 0.02562 * 20 19 4 42 42 H 1.08003 * 119.99974 * 180.27531 * 21 20 19 43 43 H 1.07998 * 120.00113 * 179.83089 * 22 21 20 44 44 H 1.08002 * 119.99994 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.00313 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8795 0.1251 6 7 4.0588 0.6500 1.1304 7 6 3.7338 1.0018 2.3901 8 8 3.0364 1.9742 2.5874 9 6 4.2371 0.1869 3.5537 10 6 3.7272 0.7959 4.8613 11 6 4.2299 -0.0193 6.0248 12 1 4.8514 -0.8849 5.8492 13 6 3.8974 0.3405 7.3136 14 7 3.1410 1.3949 7.5276 15 14 4.5211 -0.6695 8.7559 16 1 6.0061 -0.6689 8.7551 17 1 4.0260 -0.0785 10.0250 18 1 4.0267 -2.0644 8.6339 19 6 4.0717 0.8423 -1.2887 20 6 3.3215 0.9585 -2.4439 21 6 3.7838 0.4118 -3.6263 22 6 4.9921 -0.2593 -3.6516 23 6 5.7398 -0.3802 -2.4953 24 6 5.2796 0.1704 -1.3138 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9562 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.7172 3.3135 1.0567 33 1 5.1701 2.8795 0.1242 34 1 3.7163 3.4690 -0.7165 35 1 4.6164 -0.1279 0.9727 36 1 3.8741 -0.8369 3.4643 37 1 5.3272 0.1874 3.5531 38 1 4.0897 1.8199 4.9511 39 1 2.6371 0.7951 4.8617 40 1 2.9073 1.6483 8.4343 41 1 2.3758 1.4800 -2.4234 42 1 3.1996 0.5065 -4.5298 43 1 5.3520 -0.6888 -4.5748 44 1 6.6837 -0.9048 -2.5150 45 1 5.8640 0.0763 -0.4104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889482237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:46 Heat of formation + Delta-G solvation = -33.763560 kcal Electronic energy + Delta-G solvation = -23340.783795 eV Core-core repulsion = 20129.308310 eV Total energy + Delta-G solvation = -3211.475485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60259 -38.77530 -36.27037 -33.51747 -33.41968 -31.84521 -31.05225 -30.63501 -29.38319 -26.66729 -25.69317 -23.61880 -22.67645 -21.77099 -21.38002 -19.91560 -19.16894 -17.71347 -16.60304 -15.89776 -15.55803 -15.19504 -15.09280 -14.57591 -14.44409 -14.35782 -14.01035 -13.56494 -13.41271 -13.25518 -12.76806 -12.60151 -12.35699 -12.22455 -12.03570 -12.00293 -11.59855 -11.41577 -11.20378 -11.12229 -10.90297 -10.68121 -10.62385 -10.60258 -10.47032 -9.91656 -9.60348 -9.12429 -9.09976 -9.01511 -8.83372 -8.59763 -8.29869 -5.94439 -3.98661 1.15920 1.21573 3.30475 3.35382 3.39860 3.41311 3.50224 3.68405 4.44260 4.49009 4.66669 4.79878 4.88272 4.94889 5.10488 5.17750 5.30375 5.37883 5.40428 5.41356 5.57601 5.63282 5.71558 5.77727 5.83583 5.87579 5.96439 5.98134 6.05691 6.20230 6.25053 6.26073 6.27959 6.32638 6.36184 6.42489 6.45825 6.55967 6.80357 6.90261 6.93240 7.76081 7.89163 7.96899 8.09360 8.41198 8.85374 9.10038 9.64700 11.16396 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022659 B = 0.003530 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.392201 B = 7929.994516 C = 8397.331720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.130 4.130 4 C 0.218 3.782 5 C -0.158 4.158 6 N -0.735 5.735 7 C 0.514 3.486 8 O -0.528 6.528 9 C -0.131 4.131 10 C 0.039 3.961 11 C -0.528 4.528 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.074 4.074 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.116 4.116 24 C -0.118 4.118 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.395 0.605 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -2.989 -23.692 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.168 4.168 4 C 0.132 3.868 5 C -0.216 4.216 6 N -0.390 5.390 7 C 0.303 3.697 8 O -0.403 6.403 9 C -0.171 4.171 10 C 0.002 3.998 11 C -0.566 4.566 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.074 4.074 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.134 4.134 24 C -0.136 4.136 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.230 0.770 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.112 -2.159 -23.373 23.499 hybrid contribution 0.690 -0.982 0.661 1.370 sum 1.801 -3.141 -22.712 22.999 Atomic orbital electron populations 1.21744 0.96110 1.01269 1.01626 1.21466 0.95524 0.96741 1.01951 1.22094 0.93383 0.97808 1.03553 1.19060 0.93895 0.91149 0.82738 1.22204 1.00990 0.94596 1.03820 1.46442 1.55168 1.31870 1.05558 1.21437 0.79392 0.85356 0.83546 1.90600 1.37024 1.27738 1.84985 1.21876 1.01334 0.99277 0.94652 1.18868 0.97060 0.96157 0.87732 1.21198 1.31886 1.12258 0.91250 0.92738 1.25016 0.95190 0.95172 0.98954 1.69987 1.36499 1.25347 1.21005 0.86666 0.79134 0.80374 0.81834 1.20269 1.21300 1.20271 1.19938 0.94769 0.97830 0.94861 1.21095 0.99726 0.99915 0.92046 1.21135 0.96402 0.98334 0.97823 1.21145 0.95285 0.99735 0.98236 1.21128 0.99822 0.99727 0.92760 1.21017 0.95895 0.98328 0.98373 0.93227 0.93080 0.92509 0.92444 0.91793 0.88977 0.91625 0.89483 0.92702 0.92292 0.76990 0.90442 0.90442 0.95855 0.95844 0.92929 0.85555 0.86134 0.86296 0.86057 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.50 5.47 -26.73 -0.15 -1.64 16 3 C -0.13 -1.71 3.54 -26.73 -0.09 -1.80 16 4 C 0.22 2.79 0.59 -132.97 -0.08 2.71 16 5 C -0.16 -2.14 8.38 37.16 0.31 -1.83 16 6 N -0.74 -10.29 3.93 -48.68 -0.19 -10.48 16 7 C 0.51 9.53 7.03 -10.99 -0.08 9.45 16 8 O -0.53 -11.63 12.25 5.56 0.07 -11.56 16 9 C -0.13 -2.65 5.64 -27.88 -0.16 -2.80 16 10 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 11 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 C -0.07 -0.80 4.12 -104.62 -0.43 -1.23 16 20 C -0.11 -1.08 8.17 -39.59 -0.32 -1.40 16 21 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 22 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 24 C -0.12 -1.19 8.96 -39.58 -0.35 -1.55 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.67 6.63 -51.93 -0.34 0.32 16 29 H 0.06 0.92 7.29 -51.93 -0.38 0.55 16 30 H 0.09 1.51 6.32 -51.93 -0.33 1.18 16 31 H 0.07 0.73 6.21 -51.93 -0.32 0.41 16 32 H 0.09 1.44 6.17 -51.93 -0.32 1.11 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.39 4.64 6.67 -40.82 -0.27 4.37 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.13 1.13 6.05 -52.48 -0.32 0.82 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.12 1.16 6.71 -52.49 -0.35 0.80 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -32.56 356.58 -8.99 -41.55 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.25 Total: 3.69 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.71 Total: -18.57 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.55 Total: -37.20 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.56 -8.99 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889482237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.786 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds