Wall clock time and date at job start Tue Mar 31 2020 06:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47054 * 185.00114 * 4 3 2 6 6 N 1.46496 * 109.47070 * 305.00294 * 4 3 2 7 7 C 1.34770 * 120.00206 * 299.99568 * 6 4 3 8 8 O 1.21282 * 120.00037 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00208 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47219 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47219 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99789 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99922 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00193 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99962 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46810 * 60.00146 * 15 13 11 17 17 H 1.48500 * 109.47090 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47182 * 300.00480 * 15 13 11 19 19 C 1.50699 * 109.46610 * 65.00295 * 4 3 2 20 20 C 1.38230 * 120.00743 * 29.72526 * 19 4 3 21 21 C 1.38231 * 120.00475 * 179.78757 * 20 19 4 22 22 C 1.38236 * 119.99990 * 0.43993 * 21 20 19 23 23 C 1.38233 * 119.99711 * 359.81608 * 22 21 20 24 24 C 1.38237 * 120.00326 * 359.97438 * 23 22 21 25 25 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 26 26 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 28 28 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 29 29 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 30 30 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 31 31 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 32 32 H 1.08995 * 109.47070 * 60.00530 * 5 4 3 33 33 H 1.09002 * 109.47069 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47018 * 300.00144 * 5 4 3 35 35 H 0.97003 * 120.00320 * 120.00161 * 6 4 3 36 36 H 1.08996 * 109.47092 * 299.99874 * 9 7 6 37 37 H 1.09002 * 109.47015 * 60.00325 * 9 7 6 38 38 H 1.08998 * 109.47609 * 300.00219 * 10 9 7 39 39 H 1.09002 * 109.46911 * 60.00200 * 10 9 7 40 40 H 0.97000 * 119.99824 * 180.02562 * 14 13 11 41 41 H 1.08009 * 119.99776 * 0.02562 * 20 19 4 42 42 H 1.08003 * 119.99974 * 180.27531 * 21 20 19 43 43 H 1.07998 * 120.00113 * 179.83089 * 22 21 20 44 44 H 1.08002 * 119.99994 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.00313 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8795 0.1251 6 7 4.0588 0.6500 1.1304 7 6 3.7338 1.0018 2.3901 8 8 3.0364 1.9742 2.5874 9 6 4.2371 0.1869 3.5537 10 6 3.7272 0.7959 4.8613 11 6 4.2299 -0.0193 6.0248 12 1 4.8514 -0.8849 5.8492 13 6 3.8974 0.3405 7.3136 14 7 3.1410 1.3949 7.5276 15 14 4.5211 -0.6695 8.7559 16 1 6.0061 -0.6689 8.7551 17 1 4.0260 -0.0785 10.0250 18 1 4.0267 -2.0644 8.6339 19 6 4.0717 0.8423 -1.2887 20 6 3.3215 0.9585 -2.4439 21 6 3.7838 0.4118 -3.6263 22 6 4.9921 -0.2593 -3.6516 23 6 5.7398 -0.3802 -2.4953 24 6 5.2796 0.1704 -1.3138 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9562 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.7172 3.3135 1.0567 33 1 5.1701 2.8795 0.1242 34 1 3.7163 3.4690 -0.7165 35 1 4.6164 -0.1279 0.9727 36 1 3.8741 -0.8369 3.4643 37 1 5.3272 0.1874 3.5531 38 1 4.0897 1.8199 4.9511 39 1 2.6371 0.7951 4.8617 40 1 2.9073 1.6483 8.4343 41 1 2.3758 1.4800 -2.4234 42 1 3.1996 0.5065 -4.5298 43 1 5.3520 -0.6888 -4.5748 44 1 6.6837 -0.9048 -2.5150 45 1 5.8640 0.0763 -0.4104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889482237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:45 Heat of formation + Delta-G solvation = -52.082337 kcal Electronic energy + Delta-G solvation = -23341.578157 eV Core-core repulsion = 20129.308310 eV Total energy + Delta-G solvation = -3212.269847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69715 -39.89253 -37.40224 -35.52276 -34.64773 -33.28764 -32.34375 -31.65195 -30.36128 -27.77030 -27.60095 -24.77569 -23.57630 -23.21411 -22.42352 -21.24426 -20.39787 -19.00496 -18.31166 -17.09002 -16.86623 -16.51290 -16.43310 -15.94102 -15.64650 -15.39556 -15.03219 -14.82971 -14.47322 -14.28781 -14.18068 -14.05422 -13.61382 -13.42585 -13.23808 -13.14152 -12.98798 -12.81093 -12.65815 -12.51374 -12.32730 -11.94390 -11.89225 -11.72534 -11.65526 -11.56393 -11.46218 -11.29515 -10.55634 -10.41900 -10.06294 -9.77318 -9.55666 -8.17534 -6.31505 0.44096 0.53819 1.41454 1.45946 1.53643 1.80394 2.26968 2.45193 2.92611 3.15205 3.51802 3.76157 4.02486 4.04608 4.15250 4.17561 4.23544 4.33255 4.45427 4.52664 4.54022 4.57155 4.64213 4.66641 4.72584 4.78909 4.90754 4.95677 5.00957 5.07967 5.10750 5.18634 5.23616 5.28909 5.33679 5.43719 5.49780 5.56854 5.61985 5.65456 5.67536 5.79435 5.86894 6.13464 6.18948 6.68469 6.86994 7.38209 7.43887 8.94735 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022659 B = 0.003530 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.392201 B = 7929.994516 C = 8397.331720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.127 4.127 4 C 0.219 3.781 5 C -0.155 4.155 6 N -0.713 5.713 7 C 0.516 3.484 8 O -0.570 6.570 9 C -0.122 4.122 10 C 0.047 3.953 11 C -0.545 4.545 12 H 0.073 0.927 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.972 3.028 16 H -0.262 1.262 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.086 4.086 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.129 4.129 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.409 0.591 36 H 0.098 0.902 37 H 0.100 0.900 38 H -0.017 1.017 39 H -0.018 1.018 40 H 0.263 0.737 41 H 0.132 0.868 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 -5.278 -26.035 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.165 4.165 4 C 0.133 3.867 5 C -0.213 4.213 6 N -0.367 5.367 7 C 0.305 3.695 8 O -0.449 6.449 9 C -0.162 4.162 10 C 0.009 3.991 11 C -0.583 4.583 12 H 0.092 0.908 13 C -0.203 4.203 14 N -0.577 5.577 15 Si 0.796 3.204 16 H -0.187 1.187 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.086 4.086 20 C -0.135 4.135 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.147 4.147 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.247 0.753 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.001 0.999 39 H 0.000 1.000 40 H 0.071 0.929 41 H 0.150 0.850 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.592 -4.486 -25.766 26.282 hybrid contribution 0.236 -0.243 1.276 1.320 sum 2.829 -4.728 -24.490 25.102 Atomic orbital electron populations 1.21740 0.95469 1.01891 1.01539 1.21406 0.96109 0.96032 1.01504 1.22033 0.93698 0.98119 1.02681 1.19094 0.93710 0.90642 0.83222 1.22146 1.01082 0.95385 1.02682 1.46169 1.54109 1.31988 1.04468 1.21101 0.79101 0.84621 0.84710 1.90607 1.39029 1.29508 1.85769 1.21645 1.02501 0.99836 0.92207 1.18629 0.94420 0.94528 0.91480 1.21695 1.31888 1.12786 0.91914 0.90843 1.26118 0.95209 0.96356 1.02648 1.70170 1.38140 1.27543 1.21808 0.85398 0.79069 0.78761 0.77170 1.18699 1.21288 1.18753 1.19710 0.95740 0.99308 0.93869 1.21217 0.99938 1.00206 0.92117 1.21431 0.96710 0.97552 0.98108 1.21508 0.94917 0.98873 0.99007 1.21396 1.00635 0.99386 0.92386 1.21130 0.95708 0.98670 0.99242 0.91264 0.92097 0.94652 0.90728 0.94147 0.92885 0.89385 0.93078 0.92402 0.90414 0.75321 0.88423 0.88205 0.99895 0.99967 0.92880 0.84995 0.83883 0.83905 0.84165 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.91 71.98 0.71 -2.69 16 2 C -0.11 -2.78 5.47 30.59 0.17 -2.62 16 3 C -0.13 -3.37 3.54 30.60 0.11 -3.26 16 4 C 0.22 5.55 0.59 2.86 0.00 5.55 16 5 C -0.15 -4.27 8.38 71.98 0.60 -3.66 16 6 N -0.71 -19.95 3.93 -426.33 -1.67 -21.62 16 7 C 0.52 19.92 7.03 87.66 0.62 20.53 16 8 O -0.57 -27.02 12.25 -3.04 -0.04 -27.06 16 9 C -0.12 -5.00 5.64 29.85 0.17 -4.83 16 10 C 0.05 2.65 4.26 29.85 0.13 2.78 16 11 C -0.55 -31.44 9.11 25.60 0.23 -31.20 16 12 H 0.07 3.87 7.74 -2.91 -0.02 3.84 16 13 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 14 N -0.94 -59.98 13.29 21.45 0.28 -59.69 16 15 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 16 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 19 C -0.09 -1.72 4.12 -19.87 -0.08 -1.80 16 20 C -0.12 -1.98 8.17 22.27 0.18 -1.80 16 21 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 22 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 23 C -0.12 -1.75 10.05 22.27 0.22 -1.53 16 24 C -0.13 -2.32 8.96 22.27 0.20 -2.12 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.59 6.63 -2.39 -0.02 1.57 16 29 H 0.04 1.17 7.29 -2.38 -0.02 1.16 16 30 H 0.05 1.85 6.32 -2.39 -0.02 1.84 16 31 H 0.09 1.89 6.21 -2.39 -0.01 1.88 16 32 H 0.05 1.79 6.17 -2.39 -0.01 1.78 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.41 9.14 6.67 -92.71 -0.62 8.52 16 36 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 38 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 39 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 40 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.13 2.02 6.05 -2.91 -0.02 2.00 16 42 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 44 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 45 H 0.13 2.10 6.71 -2.91 -0.02 2.08 16 Total: -1.00 -74.80 356.58 5.12 -69.68 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.35 Total: 21.29 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 4.17 Total: -29.36 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -1.39 Total: -81.31 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.04 Total: -27.06 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -74.80 5.12 -69.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889482237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.600 kcal (2) G-P(sol) polarization free energy of solvation -74.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds